Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Tetranychus_20urticae_20[refseq_20GCF_5F000239435.1_202011-12-20]
641 sequences; 90,828,597 total letters
Query= NC_021249.1
Length=282895
Score E
Sequences producing significant alignments: (Bits) Value
seq444 150 3e-31
seq468 122 2e-22
seq453 122 2e-22
>seq444
Length=5217058
Score = 150 bits (166), Expect = 3e-31
Identities = 203/277 (73%), Gaps = 8/277 (3%)
Strand=Plus/Plus
Query 171798 ATGATA-AATTAATAGATATAGAGTATACTTTTTAGTTTCATAAT----ACCACCTCTAA 171852
|||||| |||||| ||| || |||| ||||| | |||| ||| |||||| | ||
Sbjct 3541526 ATGATACAATTAA-AGAAATTT-GTAT-CTTTTAATTTTCTTAAAGTTGACCACCACGAA 3541582
Query 171853 GTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCTGATAAAGATCGTT 171912
|||||||||||||||||||||| | ||||| ||| || || || || | | |||
Sbjct 3541583 GTCGTAATACTAAATGTAAAGTTGATTCTTTCTGAATGTTGTAGTCAGAAAGGGTTCGAC 3541642
Query 171913 CGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGTGGTATTCCTTCTT 171972
| || || | ||||||||||| || || | | |||||| |||||||| |||||||| |
Sbjct 3541643 CATCCTCAAGCTGTTTACCAGCGAAGATGAGACGCTGTTGATCAGGTGGGATTCCTTCCT 3541702
Query 171973 TATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCTACTTCTAGAGTAA 172032
| ||||| |||||| || ||||| || || || || | ||| ||||| | || |
Sbjct 3541703 TGTCTTGGATTTTAGCCTTGACATTTTCAATGGTGTCGGAAGGTTCAACTTCCAAGGTGA 3541762
Query 172033 TGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069
||||||||||||| | ||||| | ||| || |||||
Sbjct 3541763 TGGTTTTACCAGTGAGGGTTTTGACGAAAATTTGCAT 3541799
Score = 141 bits (156), Expect = 2e-28
Identities = 170/231 (74%), Gaps = 0/231 (0%)
Strand=Plus/Plus
Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899
|||||||| | |||||| || || || || | |||| ||||| ||||||||||||
Sbjct 3541798 ATACCACCACGAAGTCGCAAGACCAAGTGAAGGGTAGATTCTTTTTGAATATTATAATCA 3541857
Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959
| || || |||| || | ||||||||||| || || || | ||||||||||||
Sbjct 3541858 CTGAGAGTACGACCGTCCTCGAGCTGTTTACCAGCGAAGATCAAACGTTGTTGGTCAGGT 3541917
Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019
|| || |||||||| ||||| ||||| ||| || || |||||||| || | |||
Sbjct 3541918 GGGATACCTTCTTTGTCTTGGATTTTGGCTTTCACGTTTTCAATAGTATCAGAAGGTTCA 3541977
Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCATT 172070
|| || || |||||||| |||||||| | ||||| | ||| || ||||||
Sbjct 3541978 ACCTCAAGTGTAATGGTCTTACCAGTAAGAGTTTTTACGAAAATTTGCATT 3542028
Score = 116 bits (128), Expect = 7e-21
Identities = 135/182 (74%), Gaps = 0/182 (0%)
Strand=Plus/Plus
Query 171888 ATATTATAATCTGATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTC 171947
||||||||||| ||||| | ||| | || || | |||||| ||||| || || || |
Sbjct 3542194 ATATTATAATCAGATAATGTACGTCCATCTTCGAGTTGTTTTCCAGCGAAGATCAAACGT 3542253
Query 171948 TGTTGGTCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTA 172007
|||||||| || || || ||||| || || || |||||| || || || || |||
Sbjct 3542254 TGTTGGTCGGGGGGAATACCTTCCTTGTCCTGGATTTTAGCCTTGACGTTTTCAATGGTA 3542313
Query 172008 TCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGC 172067
|| || | ||| ||||| | |||||||||||| ||||| | ||||||| ||| || |||
Sbjct 3542314 TCGGAAGGTTCAACTTCCAAAGTAATGGTTTTTCCAGTGAGGGTTTTAACGAAAATTTGC 3542373
Query 172068 AT 172069
||
Sbjct 3542374 AT 3542375
Score = 116 bits (128), Expect = 7e-21
Identities = 166/231 (72%), Gaps = 2/231 (1%)
Strand=Plus/Plus
Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899
|||||||| | ||||||||| || || || | |||| |||||| ||| || |||||
Sbjct 3542374 ATACCACCACGAAGTCGTAAGACCAAGTGAAGGGTAGACTCTTTTTGAATGTTGTAATC- 3542432
Query 171900 GATAAAGAT-CGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGG 171958
| | | | | ||| | || || | ||||||||||| || || || | |||||| || ||
Sbjct 3542433 GCTCAGGGTACGTCCATCTTCAAGCTGTTTACCAGCGAAGATCAAACGCTGTTGATCGGG 3542492
Query 171959 TGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTC 172018
||| || ||||| || ||||| || || ||| ||||| ||||| || || | |||
Sbjct 3542493 TGGGATACCTTCCTTGTCTTGGATCTTGGCTTTAACATTTTCAATAGTGTCCGATGGTTC 3542552
Query 172019 TACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069
|| || || || |||||||| ||||| | || || | ||| || |||||
Sbjct 3542553 AACCTCAAGGGTGATGGTTTTTCCAGTAAGAGTCTTGACGAAAATTTGCAT 3542603
>seq468
Length=1118636
Score = 122 bits (134), Expect = 2e-22
Identities = 384/603 (64%), Gaps = 8/603 (1%)
Strand=Plus/Plus
Query 39123 AAACATGCAAAATCCGTATGTAAACCTTCGTCCCTAGATATAAATTCATTACTAAAAGTT 39182
||||| |||||||| |||||| ||||| || | ||| |||| ||| ||| ||||||
Sbjct 1106276 AAACAGGCAAAATCACAATGTAATCCTTCATCTCGAGAGATAAGTTCGTTAGAGAAAGTT 1106335
Query 39183 AATCCTGGCATTAATCCTCTCTTTTTAAGCCAAAATATTGATGCAAAACTACTAGAAAAG 39242
|| |||||||| | || | ||||||||||||||| || | || ||| | || ||
Sbjct 1106336 AAACCTGGCATCAGGCCACGCTTTTTAAGCCAAAAGATAGCGGCGAAAGAGCCTGAGAAA 1106395
Query 39243 AATATACCCTCCACACACGCAAATGCTATTATTCTTGCTCCAAACATTAATTTAT-CATC 39301
|| ||||| || ||||| ||||| || || | |||| | |||| | | | || ||
Sbjct 1106396 AAGATACCTTCAACACATGCAAAGGCAATCAATCTTTCGGCAAA-AGAGACTGATGGATT 1106454
Query 39302 TAAAATCCAATTTATGGCCCAATCTGCtttttttttGATAGAAGGTATATTTTCTATAGC 39361
| | |||| ||||| ||||| || || |||| | | | || | | |||| |||||
Sbjct 1106455 TGCAGTCCAGTTTATTGCCCATTCAGCCTTTTGAGCAACACATGGGACAGTTTCAATAGC 1106514
Query 39362 TTTAAATAATTCATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGAATA 39421
||| || | | ||
Sbjct 1106515 TTTGAAAAGAAACTCCCGCTGGTCAGGATCACTGATGTAAGTGTCTATCAGTAGGCTGTA 1106574
Query 39422 CATTTCAGAATGTACAGCTTCCATAGCTATTTGAAATGAATAAAATTGCCTTGCTTCTGA 39481
||| ||||| || ||| || || || |||||||| |||||| | ||||| |
Sbjct 1106575 CATCTCAGAGTGCACATTCTCAATCGCAATTTGAAAACCATAAAAACATCGAGCTTCGGT 1106634
Query 39482 ATACTGAACTTCGGAAAAGAATCGTTCAACTAAATTCTCAGATACAATACCATCAGATGC 39541
| ||| | || || |||| |||| ||||||| ||| ||||||||| || || ||
Sbjct 1106635 AATCTGGATATCACGAATAAATCTTTCAGCTAAATTTTCATTTACAATACCGTCTGAGGC 1106694
Query 39542 TGCGAAGAATGCTAAAACATATTTAATAAAATGTTTTTCATTATCTTTTAAATTTTCCCA 39601
| ||||||||| || ||||| | |||||||| ||| | ||| || | || ||||
Sbjct 1106695 AGAGAAGAATGCCAACACATAGCTGATAAAATGACGTTCTTCATCGTTAAGCTTAGCCCA 1106754
Query 39602 ---AGATTCAAGATCGTTTGATAAATCTACTTCTTCTATTGTCCAAAAAGATGCTACGGA 39658
|| || || ||| ||||| || || ||||| | ||||| || || ||| | |
Sbjct 1106755 GTCAG-TTAAATCTCG--AGATAAGTCAACCTCTTCAACAGTCCAGAACGAGGCTTCAGC 1106811
Query 39659 TTTTTTATACATTTGATATATATCAAAATGTTCAATGGGAAATAACACATATCGTTTAGT 39718
||| |||||||||| | |||||| || ||||| || || | ||| | || ||||
Sbjct 1106812 TTTCTTATACATTTCCCAAATATCAGGATACTCAATAGGGAACACAACAAAACGATTAGG 1106871
Query 39719 ATT 39721
|||
Sbjct 1106872 ATT 1106874
>seq453
Length=2394413
Score = 122 bits (134), Expect = 2e-22
Identities = 384/603 (64%), Gaps = 8/603 (1%)
Strand=Plus/Plus
Query 39123 AAACATGCAAAATCCGTATGTAAACCTTCGTCCCTAGATATAAATTCATTACTAAAAGTT 39182
||||| |||||||| |||||| ||||| || | ||| |||| ||| ||| ||||||
Sbjct 11728 AAACAGGCAAAATCACAATGTAATCCTTCATCTCGAGAGATAAGTTCGTTAGAGAAAGTT 11787
Query 39183 AATCCTGGCATTAATCCTCTCTTTTTAAGCCAAAATATTGATGCAAAACTACTAGAAAAG 39242
|| |||||||| | || | ||||||||||||||| || | || ||| | || ||
Sbjct 11788 AAACCTGGCATCAGGCCACGCTTTTTAAGCCAAAAGATAGCGGCGAAAGAGCCTGAGAAA 11847
Query 39243 AATATACCCTCCACACACGCAAATGCTATTATTCTTGCTCCAAACATTAATTTAT-CATC 39301
|| ||||| || ||||| ||||| || || | |||| | |||| | | | || ||
Sbjct 11848 AAGATACCTTCAACACATGCAAAGGCAATCAATCTTTCGGCAAA-AGAGACTGATGGATT 11906
Query 39302 TAAAATCCAATTTATGGCCCAATCTGCtttttttttGATAGAAGGTATATTTTCTATAGC 39361
| | |||| ||||| ||||| || || |||| | | | || | | |||| |||||
Sbjct 11907 TGCAGTCCAGTTTATTGCCCATTCAGCCTTTTGAGCAACACATGGGACAGTTTCAATAGC 11966
Query 39362 TTTAAATAATTCATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGAATA 39421
||| || | | ||
Sbjct 11967 TTTGAAAAGAAACTCCCGCTGGTCAGGATCACTGATGTAAGTGTCTATCAGTAGGCTGTA 12026
Query 39422 CATTTCAGAATGTACAGCTTCCATAGCTATTTGAAATGAATAAAATTGCCTTGCTTCTGA 39481
||| ||||| || ||| || || || |||||||| |||||| | ||||| |
Sbjct 12027 CATCTCAGAGTGCACATTCTCAATCGCAATTTGAAAACCATAAAAACATCGAGCTTCGGT 12086
Query 39482 ATACTGAACTTCGGAAAAGAATCGTTCAACTAAATTCTCAGATACAATACCATCAGATGC 39541
| ||| | || || |||| |||| ||||||| ||| ||||||||| || || ||
Sbjct 12087 AATCTGGATATCACGAATAAATCTTTCAGCTAAATTTTCATTTACAATACCGTCTGAGGC 12146
Query 39542 TGCGAAGAATGCTAAAACATATTTAATAAAATGTTTTTCATTATCTTTTAAATTTTCCCA 39601
| ||||||||| || ||||| | |||||||| ||| | ||| || | || ||||
Sbjct 12147 AGAGAAGAATGCCAACACATAGCTGATAAAATGACGTTCTTCATCGTTAAGCTTAGCCCA 12206
Query 39602 ---AGATTCAAGATCGTTTGATAAATCTACTTCTTCTATTGTCCAAAAAGATGCTACGGA 39658
|| || || ||| ||||| || || ||||| | ||||| || || ||| | |
Sbjct 12207 GTCAG-TTAAATCTCG--AGATAAGTCAACCTCTTCAACAGTCCAGAACGAGGCTTCAGC 12263
Query 39659 TTTTTTATACATTTGATATATATCAAAATGTTCAATGGGAAATAACACATATCGTTTAGT 39718
||| |||||||||| | |||||| || ||||| || || | ||| | || ||||
Sbjct 12264 TTTCTTATACATTTCCCAAATATCAGGATACTCAATAGGGAACACAACAAAACGATTAGG 12323
Query 39719 ATT 39721
|||
Sbjct 12324 ATT 12326
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 905128747597800
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |