Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tetranychus_20urticae_20[refseq_20GCF_5F000239435.1_202011-12-20] 641 sequences; 90,828,597 total letters Query= NC_021249.1 Length=282895 Score E Sequences producing significant alignments: (Bits) Value seq444 150 3e-31 seq468 122 2e-22 seq453 122 2e-22 >seq444 Length=5217058 Score = 150 bits (166), Expect = 3e-31 Identities = 203/277 (73%), Gaps = 8/277 (3%) Strand=Plus/Plus Query 171798 ATGATA-AATTAATAGATATAGAGTATACTTTTTAGTTTCATAAT----ACCACCTCTAA 171852 |||||| |||||| ||| || |||| ||||| | |||| ||| |||||| | || Sbjct 3541526 ATGATACAATTAA-AGAAATTT-GTAT-CTTTTAATTTTCTTAAAGTTGACCACCACGAA 3541582 Query 171853 GTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCTGATAAAGATCGTT 171912 |||||||||||||||||||||| | ||||| ||| || || || || | | ||| Sbjct 3541583 GTCGTAATACTAAATGTAAAGTTGATTCTTTCTGAATGTTGTAGTCAGAAAGGGTTCGAC 3541642 Query 171913 CGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGTGGTATTCCTTCTT 171972 | || || | ||||||||||| || || | | |||||| |||||||| |||||||| | Sbjct 3541643 CATCCTCAAGCTGTTTACCAGCGAAGATGAGACGCTGTTGATCAGGTGGGATTCCTTCCT 3541702 Query 171973 TATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCTACTTCTAGAGTAA 172032 | ||||| |||||| || ||||| || || || || | ||| ||||| | || | Sbjct 3541703 TGTCTTGGATTTTAGCCTTGACATTTTCAATGGTGTCGGAAGGTTCAACTTCCAAGGTGA 3541762 Query 172033 TGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 ||||||||||||| | ||||| | ||| || ||||| Sbjct 3541763 TGGTTTTACCAGTGAGGGTTTTGACGAAAATTTGCAT 3541799 Score = 141 bits (156), Expect = 2e-28 Identities = 170/231 (74%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899 |||||||| | |||||| || || || || | |||| ||||| |||||||||||| Sbjct 3541798 ATACCACCACGAAGTCGCAAGACCAAGTGAAGGGTAGATTCTTTTTGAATATTATAATCA 3541857 Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959 | || || |||| || | ||||||||||| || || || | |||||||||||| Sbjct 3541858 CTGAGAGTACGACCGTCCTCGAGCTGTTTACCAGCGAAGATCAAACGTTGTTGGTCAGGT 3541917 Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019 || || |||||||| ||||| ||||| ||| || || |||||||| || | ||| Sbjct 3541918 GGGATACCTTCTTTGTCTTGGATTTTGGCTTTCACGTTTTCAATAGTATCAGAAGGTTCA 3541977 Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCATT 172070 || || || |||||||| |||||||| | ||||| | ||| || |||||| Sbjct 3541978 ACCTCAAGTGTAATGGTCTTACCAGTAAGAGTTTTTACGAAAATTTGCATT 3542028 Score = 116 bits (128), Expect = 7e-21 Identities = 135/182 (74%), Gaps = 0/182 (0%) Strand=Plus/Plus Query 171888 ATATTATAATCTGATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTC 171947 ||||||||||| ||||| | ||| | || || | |||||| ||||| || || || | Sbjct 3542194 ATATTATAATCAGATAATGTACGTCCATCTTCGAGTTGTTTTCCAGCGAAGATCAAACGT 3542253 Query 171948 TGTTGGTCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTA 172007 |||||||| || || || ||||| || || || |||||| || || || || ||| Sbjct 3542254 TGTTGGTCGGGGGGAATACCTTCCTTGTCCTGGATTTTAGCCTTGACGTTTTCAATGGTA 3542313 Query 172008 TCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGC 172067 || || | ||| ||||| | |||||||||||| ||||| | ||||||| ||| || ||| Sbjct 3542314 TCGGAAGGTTCAACTTCCAAAGTAATGGTTTTTCCAGTGAGGGTTTTAACGAAAATTTGC 3542373 Query 172068 AT 172069 || Sbjct 3542374 AT 3542375 Score = 116 bits (128), Expect = 7e-21 Identities = 166/231 (72%), Gaps = 2/231 (1%) Strand=Plus/Plus Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899 |||||||| | ||||||||| || || || | |||| |||||| ||| || ||||| Sbjct 3542374 ATACCACCACGAAGTCGTAAGACCAAGTGAAGGGTAGACTCTTTTTGAATGTTGTAATC- 3542432 Query 171900 GATAAAGAT-CGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGG 171958 | | | | | ||| | || || | ||||||||||| || || || | |||||| || || Sbjct 3542433 GCTCAGGGTACGTCCATCTTCAAGCTGTTTACCAGCGAAGATCAAACGCTGTTGATCGGG 3542492 Query 171959 TGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTC 172018 ||| || ||||| || ||||| || || ||| ||||| ||||| || || | ||| Sbjct 3542493 TGGGATACCTTCCTTGTCTTGGATCTTGGCTTTAACATTTTCAATAGTGTCCGATGGTTC 3542552 Query 172019 TACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 || || || || |||||||| ||||| | || || | ||| || ||||| Sbjct 3542553 AACCTCAAGGGTGATGGTTTTTCCAGTAAGAGTCTTGACGAAAATTTGCAT 3542603 >seq468 Length=1118636 Score = 122 bits (134), Expect = 2e-22 Identities = 384/603 (64%), Gaps = 8/603 (1%) Strand=Plus/Plus Query 39123 AAACATGCAAAATCCGTATGTAAACCTTCGTCCCTAGATATAAATTCATTACTAAAAGTT 39182 ||||| |||||||| |||||| ||||| || | ||| |||| ||| ||| |||||| Sbjct 1106276 AAACAGGCAAAATCACAATGTAATCCTTCATCTCGAGAGATAAGTTCGTTAGAGAAAGTT 1106335 Query 39183 AATCCTGGCATTAATCCTCTCTTTTTAAGCCAAAATATTGATGCAAAACTACTAGAAAAG 39242 || |||||||| | || | ||||||||||||||| || | || ||| | || || Sbjct 1106336 AAACCTGGCATCAGGCCACGCTTTTTAAGCCAAAAGATAGCGGCGAAAGAGCCTGAGAAA 1106395 Query 39243 AATATACCCTCCACACACGCAAATGCTATTATTCTTGCTCCAAACATTAATTTAT-CATC 39301 || ||||| || ||||| ||||| || || | |||| | |||| | | | || || Sbjct 1106396 AAGATACCTTCAACACATGCAAAGGCAATCAATCTTTCGGCAAA-AGAGACTGATGGATT 1106454 Query 39302 TAAAATCCAATTTATGGCCCAATCTGCtttttttttGATAGAAGGTATATTTTCTATAGC 39361 | | |||| ||||| ||||| || || |||| | | | || | | |||| ||||| Sbjct 1106455 TGCAGTCCAGTTTATTGCCCATTCAGCCTTTTGAGCAACACATGGGACAGTTTCAATAGC 1106514 Query 39362 TTTAAATAATTCATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGAATA 39421 ||| || | | || Sbjct 1106515 TTTGAAAAGAAACTCCCGCTGGTCAGGATCACTGATGTAAGTGTCTATCAGTAGGCTGTA 1106574 Query 39422 CATTTCAGAATGTACAGCTTCCATAGCTATTTGAAATGAATAAAATTGCCTTGCTTCTGA 39481 ||| ||||| || ||| || || || |||||||| |||||| | ||||| | Sbjct 1106575 CATCTCAGAGTGCACATTCTCAATCGCAATTTGAAAACCATAAAAACATCGAGCTTCGGT 1106634 Query 39482 ATACTGAACTTCGGAAAAGAATCGTTCAACTAAATTCTCAGATACAATACCATCAGATGC 39541 | ||| | || || |||| |||| ||||||| ||| ||||||||| || || || Sbjct 1106635 AATCTGGATATCACGAATAAATCTTTCAGCTAAATTTTCATTTACAATACCGTCTGAGGC 1106694 Query 39542 TGCGAAGAATGCTAAAACATATTTAATAAAATGTTTTTCATTATCTTTTAAATTTTCCCA 39601 | ||||||||| || ||||| | |||||||| ||| | ||| || | || |||| Sbjct 1106695 AGAGAAGAATGCCAACACATAGCTGATAAAATGACGTTCTTCATCGTTAAGCTTAGCCCA 1106754 Query 39602 ---AGATTCAAGATCGTTTGATAAATCTACTTCTTCTATTGTCCAAAAAGATGCTACGGA 39658 || || || ||| ||||| || || ||||| | ||||| || || ||| | | Sbjct 1106755 GTCAG-TTAAATCTCG--AGATAAGTCAACCTCTTCAACAGTCCAGAACGAGGCTTCAGC 1106811 Query 39659 TTTTTTATACATTTGATATATATCAAAATGTTCAATGGGAAATAACACATATCGTTTAGT 39718 ||| |||||||||| | |||||| || ||||| || || | ||| | || |||| Sbjct 1106812 TTTCTTATACATTTCCCAAATATCAGGATACTCAATAGGGAACACAACAAAACGATTAGG 1106871 Query 39719 ATT 39721 ||| Sbjct 1106872 ATT 1106874 >seq453 Length=2394413 Score = 122 bits (134), Expect = 2e-22 Identities = 384/603 (64%), Gaps = 8/603 (1%) Strand=Plus/Plus Query 39123 AAACATGCAAAATCCGTATGTAAACCTTCGTCCCTAGATATAAATTCATTACTAAAAGTT 39182 ||||| |||||||| |||||| ||||| || | ||| |||| ||| ||| |||||| Sbjct 11728 AAACAGGCAAAATCACAATGTAATCCTTCATCTCGAGAGATAAGTTCGTTAGAGAAAGTT 11787 Query 39183 AATCCTGGCATTAATCCTCTCTTTTTAAGCCAAAATATTGATGCAAAACTACTAGAAAAG 39242 || |||||||| | || | ||||||||||||||| || | || ||| | || || Sbjct 11788 AAACCTGGCATCAGGCCACGCTTTTTAAGCCAAAAGATAGCGGCGAAAGAGCCTGAGAAA 11847 Query 39243 AATATACCCTCCACACACGCAAATGCTATTATTCTTGCTCCAAACATTAATTTAT-CATC 39301 || ||||| || ||||| ||||| || || | |||| | |||| | | | || || Sbjct 11848 AAGATACCTTCAACACATGCAAAGGCAATCAATCTTTCGGCAAA-AGAGACTGATGGATT 11906 Query 39302 TAAAATCCAATTTATGGCCCAATCTGCtttttttttGATAGAAGGTATATTTTCTATAGC 39361 | | |||| ||||| ||||| || || |||| | | | || | | |||| ||||| Sbjct 11907 TGCAGTCCAGTTTATTGCCCATTCAGCCTTTTGAGCAACACATGGGACAGTTTCAATAGC 11966 Query 39362 TTTAAATAATTCATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGAATA 39421 ||| || | | || Sbjct 11967 TTTGAAAAGAAACTCCCGCTGGTCAGGATCACTGATGTAAGTGTCTATCAGTAGGCTGTA 12026 Query 39422 CATTTCAGAATGTACAGCTTCCATAGCTATTTGAAATGAATAAAATTGCCTTGCTTCTGA 39481 ||| ||||| || ||| || || || |||||||| |||||| | ||||| | Sbjct 12027 CATCTCAGAGTGCACATTCTCAATCGCAATTTGAAAACCATAAAAACATCGAGCTTCGGT 12086 Query 39482 ATACTGAACTTCGGAAAAGAATCGTTCAACTAAATTCTCAGATACAATACCATCAGATGC 39541 | ||| | || || |||| |||| ||||||| ||| ||||||||| || || || Sbjct 12087 AATCTGGATATCACGAATAAATCTTTCAGCTAAATTTTCATTTACAATACCGTCTGAGGC 12146 Query 39542 TGCGAAGAATGCTAAAACATATTTAATAAAATGTTTTTCATTATCTTTTAAATTTTCCCA 39601 | ||||||||| || ||||| | |||||||| ||| | ||| || | || |||| Sbjct 12147 AGAGAAGAATGCCAACACATAGCTGATAAAATGACGTTCTTCATCGTTAAGCTTAGCCCA 12206 Query 39602 ---AGATTCAAGATCGTTTGATAAATCTACTTCTTCTATTGTCCAAAAAGATGCTACGGA 39658 || || || ||| ||||| || || ||||| | ||||| || || ||| | | Sbjct 12207 GTCAG-TTAAATCTCG--AGATAAGTCAACCTCTTCAACAGTCCAGAACGAGGCTTCAGC 12263 Query 39659 TTTTTTATACATTTGATATATATCAAAATGTTCAATGGGAAATAACACATATCGTTTAGT 39718 ||| |||||||||| | |||||| || ||||| || || | ||| | || |||| Sbjct 12264 TTTCTTATACATTTCCCAAATATCAGGATACTCAATAGGGAACACAACAAAACGATTAGG 12323 Query 39719 ATT 39721 ||| Sbjct 12324 ATT 12326 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 905128747597800