Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Tetranychus_20urticae_20[refseq_20GCF_5F000239435.1_202011-12-20]
641 sequences; 90,828,597 total letters
Query= NC_021312.1
Length=459984
Score E
Sequences producing significant alignments: (Bits) Value
seq442 203 1e-46
seq447 123 7e-23
seq453 109 2e-18
seq443 95.1 4e-14
>seq442
Length=7801961
Score = 203 bits (224), Expect = 1e-46
Identities = 780/1206 (65%), Gaps = 28/1206 (2%)
Strand=Plus/Plus
Query 155312 TTCCAGAGCCGCAAAATAAATTGTCTCAAAGATATATTTATTGACTGTTTTAGCCTCCTC 155371
||| ||||| || |||| |||||||||||||| | ||| | | | ||| || |
Sbjct 3252234 TTCGAGAGCTCCATAATAGATTGTCTCAAAGATTTGGACATTCAATTTACGAGCTTC-TG 3252292
Query 155372 AGATGT-AAATGCGATATC-CATCTTGAAAAATGTGTCGGCTAAACCCTGAACTCCAATA 155429
| ||| ||||| |||||| ||| | ||||| ||| ||||| || |||||||| |
Sbjct 3252293 GGCTGTCAAATG-GATATCTCATTAAAAGAAATGCGTCTGCTAAGCCTTGAACTCCTAAG 3252351
Query 155430 CCGACTGGGCGATGCCTGTAATTGCTCCTGCTT----GTCTTCTTGTTTGGG-TAAAAAT 155484
|| | || |||| | | | || || | | |||| | | || ||||| |
Sbjct 3252352 CCAATAGGTCGATTCTTTTTGTT-----TGAATAAGAGGCTTCCTTTAGAGGATAAAAGT 3252406
Query 155485 TCACATCAATAATGTTATTTAAATTT---GTAACCAATACCTTGGTTACGTCTGCTAATT 155541
| | |||||||| || ||||||||| || ||| | ||||| || ||| | |
Sbjct 3252407 TGATCTCAATAATTTTGTTTAAATTTCGTGTGACCGCT---TTGGTAACTTCTTTGAGTC 3252463
Query 155542 TCACATAGTCAAATGTTTTATCCTCATTTACAAACATAC-CAAGACCAATAGACGCCAGA 155600
| || | |||||| ||| ||||| | ||||| | |||| | | |||| || |||
Sbjct 3252464 TTGCAAAATCAAATTTTTGTTCCTCGGTAACAAATTTTTTCAAGGCTA-TAGAGGCAAGA 3252522
Query 155601 TTACATACCGCAGTCTCCTTGTCGTCGCTGTATTCTACAATCTCACAGCACAGGTTAGAA 155660
||||| || ||| || | | | || ||||| ||||| ||| |||||| || |||
Sbjct 3252523 TTACAAACAGCAACTTCATCAGGGGCACTATATTCAACAATTTCAGTGCACAGATTTGAA 3252582
Query 155661 CTCTTGATGGTGCCTAAATTCTTCTGGTTAGATTTACTGTTACAAGCATCCTTGTATAGA 155720
| ||||||||| || | ||| ||||| || || || |||||| ||| || || ||
Sbjct 3252583 CACTTGATGGTTCCAAGATTTTTCTGATTGGACTTTTCATTACAATGATCTTTATAAAGC 3252642
Query 155721 ATGTATGGGGTTCCTGTCTCCATCTGTGCGTCCAGAATCTTTAGCCAGAGGTCACGGGCA 155780
|| || || || || |||||||| || || | || | |||| || | || ||
Sbjct 3252643 ATATACGGAACACCAGTTTCCATCTGGGCATCAATGATTGCTTGCCAAAGAGCTCGAGCT 3252702
Query 155781 TTAATTTGCTTGTTGTATCTGCCTTCCGACTCATATTTCATATACAGCGTTCGGTAATCC 155840
|| ||||||| |||||||| ||| |||||||| | ||| ||| | | | ||
Sbjct 3252703 TTTATTTGCTGATTGTATCTTTTTTCTTCTTCATATTTAACATAAAGCTTATTGAATTCA 3252762
Query 155841 TCACCGTAACAATCACTCAGTCCAGGGCACTTATCGGGGCAAAACAGCGACCAAATTTTA 155900
|| || ||| || || ||||| || || | || || | || ||| |||| |
Sbjct 3252763 TCTCCATAAACTTCGAATAGACCAGGACATTTGTGTGGACACATAAGACTCCACATTTCA 3252822
Query 155901 TTACCGATTACACGCTCCATAAATACATCACTCGCCCAAATAGCATAGAAAAGGTCCCTT 155960
| | || ||||||||||| | || | | |||||| ||| | || | || |
Sbjct 3252823 TCTTTTTTAACTCGCTCCATAAAAAGATTAGGCACCCAAAGAGCTAAAAACAAATCTCGA 3252882
Query 155961 GCCTTTGACTCCTCATCGCC-GTGATTCTTCCGTAGCTCTAAGAATTCCTCAATATCAGG 156019
|| | ||| || | || ||| || ||| ||| || ||| || | |||||
Sbjct 3252883 GCTCTCATCTCTTCTTTACCAGTGTTTTTTCTTAAGC-ATAGGAAATCAAAGACATCAGC 3252941
Query 156020 ATGGTGTGGCTCCAGATACATAGCA-AAACTACCATTCCTCTTGCCACCCTGATCTACAT 156078
||| ||||| | ||| |||||| || || | || | || || || || | ||||
Sbjct 3252942 ATGCCAAGGCTCAATATAAATAGCATAAGCTCCTGGTCGT-TTACCCCCTTGGTTGACAT 3253000
Query 156079 ACCGAGCAGTCTTATTGAAGACACCTAGCATAGGAATAATACCATTGGAAGTGCCATTGG 156138
| ||||||| | ||| || | |||||||| | | ||||| || ||||| |
Sbjct 3253001 AACGAGCAGATTCATTAAACATTTTCAGCATAGGCACGAGACCATCAGAGAAACCATTTG 3253060
Query 156139 TTCCGCGAATATGCGAACCAGATGAGCGAACATTATGAATATGTAGTCCAATACCACCTG 156198
| || | || | | || | |||| | ||||| || || ||||| ||||| |
Sbjct 3253061 TCCCTCTGATTCGGGTTCCTTTCGCTCGAATACAATGAACATTGAGACCAATTCCACCAG 3253120
Query 156199 ACCATTTAGAAATTTGAGCGCATTCCTTTACAGTATTGAAAATACCTTCAATAGAATCAT 156258
|||||||||| | || || || | ||||| | | || ||||||||| ||| |
Sbjct 3253121 CATATTTAGAAATCAAATTACAATCTTTCAAAGTATCGGATATTCCTTCAATACTATCTT 3253180
Query 156259 CTTCCATTGATAGTAGATAGCACGAACTTAATTGAGGTCGTGGTGTTCCAGCGTTGAATA 156318
| |||||||| ||| | || | || |||||||| ||||| ||||| || || |
Sbjct 3253181 CCCTCATTGATAAAAGAAAACAACTAGATAGCTGAGGTCGAGGTGTACCAGCATTAAAAA 3253240
Query 156319 GTGTAGGTGTTGCATGAATAAAATACTTATTAGACATATAATCGTATGTCTCCTTAATCT 156378
| ||||| | ||||| |||| | || | |||||| | ||||| |||| | | ||
Sbjct 3253241 GGGTAGGAGAAGCATGTGTAAACCATTTTTGAGACATTAATTCGTAGGTCT-GTAAGGCT 3253299
Query 156379 -TCTCAAGATTAGACCCGTGAATACAGATAGAGACCCTCATCCACATATGCTGAGGACGC 156437
|||| || ||| || ||||| | | || || ||||| |||||| || || |
Sbjct 3253300 GATTCAATATCAGATCCATGAATTCCAACAGCAACTCTCATTAGCATATGTTGCGGCCTT 3253359
Query 156438 TCTACAATCACTCCATCAATTCGCAGAAGGTATGCGCGTTCCAGAGTTTTAAACCCGAAA 156497
|| || | |||| ||| |||||||||| | ||||| ||||| || || |||
Sbjct 3253360 TCAACTACTTTACCATTGATTTTAAGAAGGTATGATCTTTCCAAGGTTTTGAAACCAAAA 3253419
Query 156498 TAATCA 156503
||||||
Sbjct 3253420 TAATCA 3253425
>seq447
Length=3773812
Score = 123 bits (136), Expect = 7e-23
Identities = 169/236 (72%), Gaps = 0/236 (0%)
Strand=Plus/Minus
Query 289024 TTTTTACCAACAGCATCAATTTCGTCAATGAAAATCACACACGGAGAATTTTGTCTCGCA 289083
||| | || |||||||| || ||||| ||||| | | ||| |||| ||||| | ||
Sbjct 2669522 TTTCTTCCGACAGCATCGATCTCGTCTATGAATAATATACATGGAGCATTTTTACGAGCC 2669463
Query 289084 ATTGCAAATAATTCTCTTACACGGGATGCTCCAAGACCAACATACATTTCTACAAATTCA 289143
|| |||| | ||||| ||||| || | |||| || ||| ||||||| | |||||||
Sbjct 2669462 ATAACAAACATATCTCTGACACGAGAAGGACCAACTCCGACAAACATTTCCAAAAATTCA 2669403
Query 289144 GAAGCGGATACTTGAATGAATGTTACATTTGCTTCGCCTGCTACTGCCCTCGCCAGAAGT 289203
||| || ||| |||||| | |||||||||||| || ||| ||| |||| | |
Sbjct 2669402 GAACCGTTGACTGAAATGAAAGGTACATTTGCTTCACCGGCTGTTGCTTTCGCTAACAAC 2669343
Query 289204 GTCTTACCTGTTCCAGGTGGTCCCTCTAATAGAACTCCCTTTGGTACTTTTGCCCC 289259
|| ||||| || ||||| |||||| ||| || | || || |||| ||| || ||
Sbjct 2669342 GTTTTACCAGTACCAGGAGGTCCCGTTAACAGTGCACCTTTAGGTATTTTGGCTCC 2669287
>seq453
Length=2394413
Score = 109 bits (120), Expect = 2e-18
Identities = 89/108 (82%), Gaps = 0/108 (0%)
Strand=Plus/Plus
Query 302565 CATAATGTCTTCCATACTCTTGATTAAACGACGCTGAATATAACCAGTTGTAGATGTTTT 302624
|||||| ||||||| |||||||||||||| ||||||||||||||| || |||||
Sbjct 1541566 CATAATAGATTCCATAGCTTTGATTAAACGACGTTGAATATAACCAGTTTCAGCAGTTTT 1541625
Query 302625 TACAGCTGTATCAATTAGACCAACACGACCACCCATAGCATGGAAGAA 302672
|||||| ||||| || ||||| ||||||| ||||| | |||||||||
Sbjct 1541626 TACAGCGGTATCGATAAGACCTTCACGACCTCCCATTGAATGGAAGAA 1541673
Score = 102 bits (112), Expect = 2e-16
Identities = 117/155 (75%), Gaps = 3/155 (2%)
Strand=Plus/Plus
Query 303627 TTGGGGCATATGTAAATTCATCTCATCACCGTCAAAATCAGCATTATACGGCTTTGTGTC 303686
||| || | ||| | |||||| |||||||| |||||||||||||| || || |||| |
Sbjct 1542661 TTGTGGAACATGCATATTCATTTCATCACCATCAAAATCAGCATTGTAAGGAGTTGTTAC 1542720
Query 303687 CGCAACGTTCATCCGGAAAGTATCACCCTGCATCATAACACGGGCTTTATGACACATCAT 303746
| | || | || ||||| | ||| | | | ||||||| | |||||| ||||||
Sbjct 1542721 TGATAAATTGAGCCTAAAAGT-TGACCAGGGA--AGAACACGGATTCTATGACCCATCAT 1542777
Query 303747 AGACATTCTGTGTAGAGTTGGCTGACGATTGAAAA 303781
||||||| |||| | ||||||||| ||||||||||
Sbjct 1542778 AGACATTTTGTGCAAAGTTGGCTGTCGATTGAAAA 1542812
Score = 89.7 bits (98), Expect = 2e-12
Identities = 139/196 (71%), Gaps = 7/196 (4%)
Strand=Plus/Plus
Query 304029 TAAG-TTGGGGTCAGGTGTAATTACAGAGCGAGCACTAAAATCAACACGCTTACCCATAA 304087
|||| ||||| |||||||||||||||| |||||| ||||||||||| |||||||| |
Sbjct 1543062 TAAGATTGGGATCAGGTGTAATTACAGTACGAGCAGAGAAATCAACACGTTTACCCATTA 1543121
Query 304088 GATTACCCCTAACACGACCGCCCTTACCGTTTAGCCTATCCTTGATTGCCTTCAGGGGGC 304147
||| || |||| |||||| | || |||| || | |||||||| |||| || |
Sbjct 1543122 AATTTCCTCTAATACGACCTTCTTTGGATTTTAATCTTTGCTTGATTGATTTCAATGGCC 1543181
Query 304148 GACCCGAACGCTGGGCTACAGCC---GCAACGCCAGGAATCTTATTGTCTACCAGCGTCG 304204
||| || || | |||| | | ||||||| | |||||| | ||||| |
Sbjct 1543182 TACCAGATTTTTG---CATAGCCCGAGGTATTCCAGGAAGTTCATTGTCAATAAGCGTAG 1543238
Query 304205 CAACATAATATTGCAG 304220
|||||| ||||| ||
Sbjct 1543239 CAACATGGTATTGAAG 1543254
>seq443
Length=6836010
Score = 95.1 bits (104), Expect = 4e-14
Identities = 84/105 (80%), Gaps = 0/105 (0%)
Strand=Plus/Minus
Query 302583 CTTGATTAAACGACGCTGAATATAACCAGTTGTAGATGTTTTTACAGCTGTATCAATTAG 302642
||||||||||| | |||| |||||| | | |||||||||| ||||||||||| || |
Sbjct 2327667 CTTGATTAAACATCTTTGAAGATAACCTGATCTAGATGTTTTGACAGCTGTATCTATCAA 2327608
Query 302643 ACCAACACGACCACCCATAGCATGGAAGAATAGCTCTTCCGGTCG 302687
||| |||||||| ||||| ||||||||| | ||||| |||||
Sbjct 2327607 ACCTTCACGACCAGCCATACAATGGAAGAAAAACTCTTGTGGTCG 2327563
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1471805512238017
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |