Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tetranychus_20urticae_20[refseq_20GCF_5F000239435.1_202011-12-20] 641 sequences; 90,828,597 total letters Query= NC_021312.1 Length=459984 Score E Sequences producing significant alignments: (Bits) Value seq442 203 1e-46 seq447 123 7e-23 seq453 109 2e-18 seq443 95.1 4e-14 >seq442 Length=7801961 Score = 203 bits (224), Expect = 1e-46 Identities = 780/1206 (65%), Gaps = 28/1206 (2%) Strand=Plus/Plus Query 155312 TTCCAGAGCCGCAAAATAAATTGTCTCAAAGATATATTTATTGACTGTTTTAGCCTCCTC 155371 ||| ||||| || |||| |||||||||||||| | ||| | | | ||| || | Sbjct 3252234 TTCGAGAGCTCCATAATAGATTGTCTCAAAGATTTGGACATTCAATTTACGAGCTTC-TG 3252292 Query 155372 AGATGT-AAATGCGATATC-CATCTTGAAAAATGTGTCGGCTAAACCCTGAACTCCAATA 155429 | ||| ||||| |||||| ||| | ||||| ||| ||||| || |||||||| | Sbjct 3252293 GGCTGTCAAATG-GATATCTCATTAAAAGAAATGCGTCTGCTAAGCCTTGAACTCCTAAG 3252351 Query 155430 CCGACTGGGCGATGCCTGTAATTGCTCCTGCTT----GTCTTCTTGTTTGGG-TAAAAAT 155484 || | || |||| | | | || || | | |||| | | || ||||| | Sbjct 3252352 CCAATAGGTCGATTCTTTTTGTT-----TGAATAAGAGGCTTCCTTTAGAGGATAAAAGT 3252406 Query 155485 TCACATCAATAATGTTATTTAAATTT---GTAACCAATACCTTGGTTACGTCTGCTAATT 155541 | | |||||||| || ||||||||| || ||| | ||||| || ||| | | Sbjct 3252407 TGATCTCAATAATTTTGTTTAAATTTCGTGTGACCGCT---TTGGTAACTTCTTTGAGTC 3252463 Query 155542 TCACATAGTCAAATGTTTTATCCTCATTTACAAACATAC-CAAGACCAATAGACGCCAGA 155600 | || | |||||| ||| ||||| | ||||| | |||| | | |||| || ||| Sbjct 3252464 TTGCAAAATCAAATTTTTGTTCCTCGGTAACAAATTTTTTCAAGGCTA-TAGAGGCAAGA 3252522 Query 155601 TTACATACCGCAGTCTCCTTGTCGTCGCTGTATTCTACAATCTCACAGCACAGGTTAGAA 155660 ||||| || ||| || | | | || ||||| ||||| ||| |||||| || ||| Sbjct 3252523 TTACAAACAGCAACTTCATCAGGGGCACTATATTCAACAATTTCAGTGCACAGATTTGAA 3252582 Query 155661 CTCTTGATGGTGCCTAAATTCTTCTGGTTAGATTTACTGTTACAAGCATCCTTGTATAGA 155720 | ||||||||| || | ||| ||||| || || || |||||| ||| || || || Sbjct 3252583 CACTTGATGGTTCCAAGATTTTTCTGATTGGACTTTTCATTACAATGATCTTTATAAAGC 3252642 Query 155721 ATGTATGGGGTTCCTGTCTCCATCTGTGCGTCCAGAATCTTTAGCCAGAGGTCACGGGCA 155780 || || || || || |||||||| || || | || | |||| || | || || Sbjct 3252643 ATATACGGAACACCAGTTTCCATCTGGGCATCAATGATTGCTTGCCAAAGAGCTCGAGCT 3252702 Query 155781 TTAATTTGCTTGTTGTATCTGCCTTCCGACTCATATTTCATATACAGCGTTCGGTAATCC 155840 || ||||||| |||||||| ||| |||||||| | ||| ||| | | | || Sbjct 3252703 TTTATTTGCTGATTGTATCTTTTTTCTTCTTCATATTTAACATAAAGCTTATTGAATTCA 3252762 Query 155841 TCACCGTAACAATCACTCAGTCCAGGGCACTTATCGGGGCAAAACAGCGACCAAATTTTA 155900 || || ||| || || ||||| || || | || || | || ||| |||| | Sbjct 3252763 TCTCCATAAACTTCGAATAGACCAGGACATTTGTGTGGACACATAAGACTCCACATTTCA 3252822 Query 155901 TTACCGATTACACGCTCCATAAATACATCACTCGCCCAAATAGCATAGAAAAGGTCCCTT 155960 | | || ||||||||||| | || | | |||||| ||| | || | || | Sbjct 3252823 TCTTTTTTAACTCGCTCCATAAAAAGATTAGGCACCCAAAGAGCTAAAAACAAATCTCGA 3252882 Query 155961 GCCTTTGACTCCTCATCGCC-GTGATTCTTCCGTAGCTCTAAGAATTCCTCAATATCAGG 156019 || | ||| || | || ||| || ||| ||| || ||| || | ||||| Sbjct 3252883 GCTCTCATCTCTTCTTTACCAGTGTTTTTTCTTAAGC-ATAGGAAATCAAAGACATCAGC 3252941 Query 156020 ATGGTGTGGCTCCAGATACATAGCA-AAACTACCATTCCTCTTGCCACCCTGATCTACAT 156078 ||| ||||| | ||| |||||| || || | || | || || || || | |||| Sbjct 3252942 ATGCCAAGGCTCAATATAAATAGCATAAGCTCCTGGTCGT-TTACCCCCTTGGTTGACAT 3253000 Query 156079 ACCGAGCAGTCTTATTGAAGACACCTAGCATAGGAATAATACCATTGGAAGTGCCATTGG 156138 | ||||||| | ||| || | |||||||| | | ||||| || ||||| | Sbjct 3253001 AACGAGCAGATTCATTAAACATTTTCAGCATAGGCACGAGACCATCAGAGAAACCATTTG 3253060 Query 156139 TTCCGCGAATATGCGAACCAGATGAGCGAACATTATGAATATGTAGTCCAATACCACCTG 156198 | || | || | | || | |||| | ||||| || || ||||| ||||| | Sbjct 3253061 TCCCTCTGATTCGGGTTCCTTTCGCTCGAATACAATGAACATTGAGACCAATTCCACCAG 3253120 Query 156199 ACCATTTAGAAATTTGAGCGCATTCCTTTACAGTATTGAAAATACCTTCAATAGAATCAT 156258 |||||||||| | || || || | ||||| | | || ||||||||| ||| | Sbjct 3253121 CATATTTAGAAATCAAATTACAATCTTTCAAAGTATCGGATATTCCTTCAATACTATCTT 3253180 Query 156259 CTTCCATTGATAGTAGATAGCACGAACTTAATTGAGGTCGTGGTGTTCCAGCGTTGAATA 156318 | |||||||| ||| | || | || |||||||| ||||| ||||| || || | Sbjct 3253181 CCCTCATTGATAAAAGAAAACAACTAGATAGCTGAGGTCGAGGTGTACCAGCATTAAAAA 3253240 Query 156319 GTGTAGGTGTTGCATGAATAAAATACTTATTAGACATATAATCGTATGTCTCCTTAATCT 156378 | ||||| | ||||| |||| | || | |||||| | ||||| |||| | | || Sbjct 3253241 GGGTAGGAGAAGCATGTGTAAACCATTTTTGAGACATTAATTCGTAGGTCT-GTAAGGCT 3253299 Query 156379 -TCTCAAGATTAGACCCGTGAATACAGATAGAGACCCTCATCCACATATGCTGAGGACGC 156437 |||| || ||| || ||||| | | || || ||||| |||||| || || | Sbjct 3253300 GATTCAATATCAGATCCATGAATTCCAACAGCAACTCTCATTAGCATATGTTGCGGCCTT 3253359 Query 156438 TCTACAATCACTCCATCAATTCGCAGAAGGTATGCGCGTTCCAGAGTTTTAAACCCGAAA 156497 || || | |||| ||| |||||||||| | ||||| ||||| || || ||| Sbjct 3253360 TCAACTACTTTACCATTGATTTTAAGAAGGTATGATCTTTCCAAGGTTTTGAAACCAAAA 3253419 Query 156498 TAATCA 156503 |||||| Sbjct 3253420 TAATCA 3253425 >seq447 Length=3773812 Score = 123 bits (136), Expect = 7e-23 Identities = 169/236 (72%), Gaps = 0/236 (0%) Strand=Plus/Minus Query 289024 TTTTTACCAACAGCATCAATTTCGTCAATGAAAATCACACACGGAGAATTTTGTCTCGCA 289083 ||| | || |||||||| || ||||| ||||| | | ||| |||| ||||| | || Sbjct 2669522 TTTCTTCCGACAGCATCGATCTCGTCTATGAATAATATACATGGAGCATTTTTACGAGCC 2669463 Query 289084 ATTGCAAATAATTCTCTTACACGGGATGCTCCAAGACCAACATACATTTCTACAAATTCA 289143 || |||| | ||||| ||||| || | |||| || ||| ||||||| | ||||||| Sbjct 2669462 ATAACAAACATATCTCTGACACGAGAAGGACCAACTCCGACAAACATTTCCAAAAATTCA 2669403 Query 289144 GAAGCGGATACTTGAATGAATGTTACATTTGCTTCGCCTGCTACTGCCCTCGCCAGAAGT 289203 ||| || ||| |||||| | |||||||||||| || ||| ||| |||| | | Sbjct 2669402 GAACCGTTGACTGAAATGAAAGGTACATTTGCTTCACCGGCTGTTGCTTTCGCTAACAAC 2669343 Query 289204 GTCTTACCTGTTCCAGGTGGTCCCTCTAATAGAACTCCCTTTGGTACTTTTGCCCC 289259 || ||||| || ||||| |||||| ||| || | || || |||| ||| || || Sbjct 2669342 GTTTTACCAGTACCAGGAGGTCCCGTTAACAGTGCACCTTTAGGTATTTTGGCTCC 2669287 >seq453 Length=2394413 Score = 109 bits (120), Expect = 2e-18 Identities = 89/108 (82%), Gaps = 0/108 (0%) Strand=Plus/Plus Query 302565 CATAATGTCTTCCATACTCTTGATTAAACGACGCTGAATATAACCAGTTGTAGATGTTTT 302624 |||||| ||||||| |||||||||||||| ||||||||||||||| || ||||| Sbjct 1541566 CATAATAGATTCCATAGCTTTGATTAAACGACGTTGAATATAACCAGTTTCAGCAGTTTT 1541625 Query 302625 TACAGCTGTATCAATTAGACCAACACGACCACCCATAGCATGGAAGAA 302672 |||||| ||||| || ||||| ||||||| ||||| | ||||||||| Sbjct 1541626 TACAGCGGTATCGATAAGACCTTCACGACCTCCCATTGAATGGAAGAA 1541673 Score = 102 bits (112), Expect = 2e-16 Identities = 117/155 (75%), Gaps = 3/155 (2%) Strand=Plus/Plus Query 303627 TTGGGGCATATGTAAATTCATCTCATCACCGTCAAAATCAGCATTATACGGCTTTGTGTC 303686 ||| || | ||| | |||||| |||||||| |||||||||||||| || || |||| | Sbjct 1542661 TTGTGGAACATGCATATTCATTTCATCACCATCAAAATCAGCATTGTAAGGAGTTGTTAC 1542720 Query 303687 CGCAACGTTCATCCGGAAAGTATCACCCTGCATCATAACACGGGCTTTATGACACATCAT 303746 | | || | || ||||| | ||| | | | ||||||| | |||||| |||||| Sbjct 1542721 TGATAAATTGAGCCTAAAAGT-TGACCAGGGA--AGAACACGGATTCTATGACCCATCAT 1542777 Query 303747 AGACATTCTGTGTAGAGTTGGCTGACGATTGAAAA 303781 ||||||| |||| | ||||||||| |||||||||| Sbjct 1542778 AGACATTTTGTGCAAAGTTGGCTGTCGATTGAAAA 1542812 Score = 89.7 bits (98), Expect = 2e-12 Identities = 139/196 (71%), Gaps = 7/196 (4%) Strand=Plus/Plus Query 304029 TAAG-TTGGGGTCAGGTGTAATTACAGAGCGAGCACTAAAATCAACACGCTTACCCATAA 304087 |||| ||||| |||||||||||||||| |||||| ||||||||||| |||||||| | Sbjct 1543062 TAAGATTGGGATCAGGTGTAATTACAGTACGAGCAGAGAAATCAACACGTTTACCCATTA 1543121 Query 304088 GATTACCCCTAACACGACCGCCCTTACCGTTTAGCCTATCCTTGATTGCCTTCAGGGGGC 304147 ||| || |||| |||||| | || |||| || | |||||||| |||| || | Sbjct 1543122 AATTTCCTCTAATACGACCTTCTTTGGATTTTAATCTTTGCTTGATTGATTTCAATGGCC 1543181 Query 304148 GACCCGAACGCTGGGCTACAGCC---GCAACGCCAGGAATCTTATTGTCTACCAGCGTCG 304204 ||| || || | |||| | | ||||||| | |||||| | ||||| | Sbjct 1543182 TACCAGATTTTTG---CATAGCCCGAGGTATTCCAGGAAGTTCATTGTCAATAAGCGTAG 1543238 Query 304205 CAACATAATATTGCAG 304220 |||||| ||||| || Sbjct 1543239 CAACATGGTATTGAAG 1543254 >seq443 Length=6836010 Score = 95.1 bits (104), Expect = 4e-14 Identities = 84/105 (80%), Gaps = 0/105 (0%) Strand=Plus/Minus Query 302583 CTTGATTAAACGACGCTGAATATAACCAGTTGTAGATGTTTTTACAGCTGTATCAATTAG 302642 ||||||||||| | |||| |||||| | | |||||||||| ||||||||||| || | Sbjct 2327667 CTTGATTAAACATCTTTGAAGATAACCTGATCTAGATGTTTTGACAGCTGTATCTATCAA 2327608 Query 302643 ACCAACACGACCACCCATAGCATGGAAGAATAGCTCTTCCGGTCG 302687 ||| |||||||| ||||| ||||||||| | ||||| ||||| Sbjct 2327607 ACCTTCACGACCAGCCATACAATGGAAGAAAAACTCTTGTGGTCG 2327563 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1471805512238017