Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tetranychus_20urticae_20[refseq_20GCF_5F000239435.1_202011-12-20] 641 sequences; 90,828,597 total letters Query= NC_021901.1 Length=197693 Score E Sequences producing significant alignments: (Bits) Value seq443 102 1e-16 seq448 89.7 7e-13 seq462 82.4 1e-10 >seq443 Length=6836010 Score = 102 bits (112), Expect = 1e-16 Identities = 159/225 (71%), Gaps = 2/225 (1%) Strand=Plus/Minus Query 172401 GAACTTTTATGGGTTATTAAAGGTTCAACTGATTCAAAACAATTAAATGATATAGGTGTT 172460 |||||| | ||| | |||||||| ||| | ||| ||| | || | ||| ||| Sbjct 506151 GAACTTCTGTGGTTCATTAAAGGGGAAACAAACAGCAAAATATTGCAAGAAAAAGGAGTT 506092 Query 172461 AAAGTTTGGAATGATAATGGTTCTCGTGAATTTTTAGATTTATGCGGGTTT-ACTGAAAG 172519 | ||||| ||| |||||| || ||||||||||| || || ||||| | || || Sbjct 506091 CATATTTGGGATGCTAATGGATCGAAAGAATTTTTAGA-TTCTGTTGGTTTCTCAGATAG 506033 Query 172520 AAAAGAAGGTGATTTAGGCCCAATTTATGGATTTCAATGGAGACATGCAGGGGCTCAATA 172579 | ||||||| |||||||| || |||||||| ||||||||| ||||| || || |||| Sbjct 506032 AGAAGAAGGAGATTTAGGTCCTATTTATGGGTTTCAATGGCGACATTGGGGTGCCAAATA 505973 Query 172580 TATCGACTGTGATACAGATTACACAGGACAAGGAGTGGACCAATT 172624 ||| || ||||| |||| | || ||||| | ||||| || Sbjct 505972 TATTGATGCAAATACAAATTATTCTGGTCAAGGTATTGACCAGTT 505928 >seq448 Length=3678511 Score = 89.7 bits (98), Expect = 7e-13 Identities = 165/240 (69%), Gaps = 4/240 (2%) Strand=Plus/Plus Query 194588 AAATTTTTATAGGGCCAACTTATTACCATCGTCTTAAACACATGGTTAAGGATAAAATGC 194647 |||| ||| |||| || |||||||| || ||||||||||||||||| | || || || | Sbjct 3091567 AAATCTTTTTAGGACCCACTTATTATCAACGTCTTAAACACATGGTAGATGACAAGATTC 3091626 Query 194648 ATGCTAGAAGTCATGGGCAAGTAACTACTTTACATCGACAACCAAATTGTGGTCGTTCTC 194707 | ||||| | ||| | || | || | ||||||| | ||||| || Sbjct 3091627 ACTCTAGAGCCCGTGGTCCTGTGCAAATCTTGGTTAGACAACCTATGGAAGGTCGAGCTA 3091686 Query 194708 AAGGTGGAGGTTTAAGATTTGGAGAAATGGAAAAAGACTGTATTTTAGTCCATGGTGCTA 194767 || |||||||||| | || || ||||||||| || ||| | | || || ||| Sbjct 3091687 GAGATGGAGGTTTACGTTTCGGTGAAATGGAACGTGATTGTCAAATTGCTCACGGAGCTG 3091746 Query 194768 CTCAATTCTTAAATGAAAGAATGTTTTTGTA--TTCTGATCCTTTTCAAGTCGATGTTTG 194825 |||||||||| | |||||| |||| | | ||||||||||| | ||| ||||||| Sbjct 3091747 CTCAATTCTTGAGGGAAAGA--CTTTTCGAAGTTTCTGATCCTTATAGAGTTCATGTTTG 3091804 >seq462 Length=1523190 Score = 82.4 bits (90), Expect = 1e-10 Identities = 137/192 (71%), Gaps = 17/192 (9%) Strand=Plus/Minus Query 23095 CACGGAGATGGATATAATTTTGATGGTCCAGGTCAAATTTTAGCTCATGCTTTTTTCCCT 23154 || || |||||| || ||| ||||||||||| | | ||||||||||| | |||||| Sbjct 1352797 CATGGTGATGGAGATCCTTTCGATGGTCCAGGAAATACATTAGCTCATGCATATTTCCC- 1352739 Query 23155 GGTACTGGAAGA-GGAGGAGATGCTCATTTTGATTTAGAAGAAAATTGGAC-ATTGTGGG 23212 || || | ||||| |||||||||||||| |||||| | ||||| |||| Sbjct 1352738 ---AC---AATATGGAGGTGATGCTCATTTTGACGATGAAGAATACTGGACCATTG---- 1352689 Query 23213 AAGAAGATAGTGGTACTAGTTTATATAGTGTT--AGTTTACATGAATTAGGACATTCTTT 23270 | ||| ||| || | | ||| | ||| || | |||||||||||||||||||| Sbjct 1352688 ATTCGTATACTGGAACCAATCTATTTCAAGTTGCAGCT--CATGAATTAGGACATTCTTT 1352631 Query 23271 AGGTTTAAGTCA 23282 ||| ||| |||| Sbjct 1352630 AGGCTTAGGTCA 1352619 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 632484532177080