Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Tetranychus_20urticae_20[refseq_20GCF_5F000239435.1_202011-12-20]
641 sequences; 90,828,597 total letters
Query= NC_021901.1
Length=197693
Score E
Sequences producing significant alignments: (Bits) Value
seq443 102 1e-16
seq448 89.7 7e-13
seq462 82.4 1e-10
>seq443
Length=6836010
Score = 102 bits (112), Expect = 1e-16
Identities = 159/225 (71%), Gaps = 2/225 (1%)
Strand=Plus/Minus
Query 172401 GAACTTTTATGGGTTATTAAAGGTTCAACTGATTCAAAACAATTAAATGATATAGGTGTT 172460
|||||| | ||| | |||||||| ||| | ||| ||| | || | ||| |||
Sbjct 506151 GAACTTCTGTGGTTCATTAAAGGGGAAACAAACAGCAAAATATTGCAAGAAAAAGGAGTT 506092
Query 172461 AAAGTTTGGAATGATAATGGTTCTCGTGAATTTTTAGATTTATGCGGGTTT-ACTGAAAG 172519
| ||||| ||| |||||| || ||||||||||| || || ||||| | || ||
Sbjct 506091 CATATTTGGGATGCTAATGGATCGAAAGAATTTTTAGA-TTCTGTTGGTTTCTCAGATAG 506033
Query 172520 AAAAGAAGGTGATTTAGGCCCAATTTATGGATTTCAATGGAGACATGCAGGGGCTCAATA 172579
| ||||||| |||||||| || |||||||| ||||||||| ||||| || || ||||
Sbjct 506032 AGAAGAAGGAGATTTAGGTCCTATTTATGGGTTTCAATGGCGACATTGGGGTGCCAAATA 505973
Query 172580 TATCGACTGTGATACAGATTACACAGGACAAGGAGTGGACCAATT 172624
||| || ||||| |||| | || ||||| | ||||| ||
Sbjct 505972 TATTGATGCAAATACAAATTATTCTGGTCAAGGTATTGACCAGTT 505928
>seq448
Length=3678511
Score = 89.7 bits (98), Expect = 7e-13
Identities = 165/240 (69%), Gaps = 4/240 (2%)
Strand=Plus/Plus
Query 194588 AAATTTTTATAGGGCCAACTTATTACCATCGTCTTAAACACATGGTTAAGGATAAAATGC 194647
|||| ||| |||| || |||||||| || ||||||||||||||||| | || || || |
Sbjct 3091567 AAATCTTTTTAGGACCCACTTATTATCAACGTCTTAAACACATGGTAGATGACAAGATTC 3091626
Query 194648 ATGCTAGAAGTCATGGGCAAGTAACTACTTTACATCGACAACCAAATTGTGGTCGTTCTC 194707
| ||||| | ||| | || | || | ||||||| | ||||| ||
Sbjct 3091627 ACTCTAGAGCCCGTGGTCCTGTGCAAATCTTGGTTAGACAACCTATGGAAGGTCGAGCTA 3091686
Query 194708 AAGGTGGAGGTTTAAGATTTGGAGAAATGGAAAAAGACTGTATTTTAGTCCATGGTGCTA 194767
|| |||||||||| | || || ||||||||| || ||| | | || || |||
Sbjct 3091687 GAGATGGAGGTTTACGTTTCGGTGAAATGGAACGTGATTGTCAAATTGCTCACGGAGCTG 3091746
Query 194768 CTCAATTCTTAAATGAAAGAATGTTTTTGTA--TTCTGATCCTTTTCAAGTCGATGTTTG 194825
|||||||||| | |||||| |||| | | ||||||||||| | ||| |||||||
Sbjct 3091747 CTCAATTCTTGAGGGAAAGA--CTTTTCGAAGTTTCTGATCCTTATAGAGTTCATGTTTG 3091804
>seq462
Length=1523190
Score = 82.4 bits (90), Expect = 1e-10
Identities = 137/192 (71%), Gaps = 17/192 (9%)
Strand=Plus/Minus
Query 23095 CACGGAGATGGATATAATTTTGATGGTCCAGGTCAAATTTTAGCTCATGCTTTTTTCCCT 23154
|| || |||||| || ||| ||||||||||| | | ||||||||||| | ||||||
Sbjct 1352797 CATGGTGATGGAGATCCTTTCGATGGTCCAGGAAATACATTAGCTCATGCATATTTCCC- 1352739
Query 23155 GGTACTGGAAGA-GGAGGAGATGCTCATTTTGATTTAGAAGAAAATTGGAC-ATTGTGGG 23212
|| || | ||||| |||||||||||||| |||||| | ||||| ||||
Sbjct 1352738 ---AC---AATATGGAGGTGATGCTCATTTTGACGATGAAGAATACTGGACCATTG---- 1352689
Query 23213 AAGAAGATAGTGGTACTAGTTTATATAGTGTT--AGTTTACATGAATTAGGACATTCTTT 23270
| ||| ||| || | | ||| | ||| || | ||||||||||||||||||||
Sbjct 1352688 ATTCGTATACTGGAACCAATCTATTTCAAGTTGCAGCT--CATGAATTAGGACATTCTTT 1352631
Query 23271 AGGTTTAAGTCA 23282
||| ||| ||||
Sbjct 1352630 AGGCTTAGGTCA 1352619
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 632484532177080
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |