Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Tetranychus_20urticae_20[refseq_20GCF_5F000239435.1_202011-12-20]
641 sequences; 90,828,597 total letters
Query= NC_021923.1
Length=140633
Score E
Sequences producing significant alignments: (Bits) Value
seq442 158 1e-33
seq444 140 3e-28
>seq442
Length=7801961
Score = 158 bits (174), Expect = 1e-33
Identities = 1117/1785 (63%), Gaps = 44/1785 (2%)
Strand=Plus/Plus
Query 138154 TTATCTACAGTAAACTTTATGGCATCAGCGGCTGGTTTCGTTCTCAGATAATACATTCCC 138213
||||| |||||||| | || |||| || || ||||| ||| | || ||||| ||
Sbjct 3251596 TTATCAACAGTAAATTGGATAGCATTTGCAGCAGGTTTACTTCGTAAGTAGTACATGCCT 3251655
Query 138214 GTTTTTAACCCATTTTCCCAGGCGTACATGTGTATCGAAGTGAGTAACGCGTAAGTCGGT 138273
|| || | |||| |||||| | || | || ||||| || | | || || |||
Sbjct 3251656 GTCTTAAGCCCAAGCTCCCAGCCATAGAAATGCATCGAGGTCATTTTAGCAACAGAAGGT 3251715
Query 138274 TTCGCCAGA--AATATGTTAAACGATTGACTCTGATCGATGAAAGCGCCTCGATCAATGG 138331
| | | | ||||| ||||| |||||||| ||||| || ||||| || || ||| |
Sbjct 3251716 CTTTCAAAATGAATAT-TTAAA-GATTGACTTTGATCAATAAAAGCTCCACGTTCAGCAG 3251773
Query 138332 CCATGTTAATTAAATTTTTACTTTTCATCTCCCACACGGTCTTGTATAGATCACGAATAT 138391
|||| | | | |||||| || ||||| || || || | | |||||
Sbjct 3251774 CCATTTCCAGAATATTTTTTTGAGGAATTTCCCAAACAGTTCGATACAATTGCTTAATAT 3251833
Query 138392 GTCGCGGTATTGTTGCAATATTTTGAATGCTCCCGTTGGCCGCAATGATGCGATTTCTCA 138451
|| || | ||||| ||||||| || || ||| || | | |||||
Sbjct 3251834 CCTCTGGGATACCTTCAATAGCTTGAATGGAGCCTCTGTGATAAATAATCTGTTCTCTCA 3251893
Query 138452 TGTCATCGTTGTACAGAT-TCAACTTGATCAAGTCGTTTATCAGATATCTGTTTATGACC 138510
|||| || || | || | || | | |||| || || | |||| ||| | ||
Sbjct 3251894 TGTCTTCATTCCAAAGTTCTCGATCAG-TCAAATCTTTGACAAGATGGTGGTTAACTACT 3251952
Query 138511 TGAAATTCACCGGCCAATACTCGACGAACGTAAATGTTGTTGGTGAAAGGCTCAAACGAT 138570
||||||||||| | | ||||| ||| || ||||| | || | || |||| |||
Sbjct 3251953 TGAAATTCACCAGAAAGAACTCGTCGAGTATAGATGTTACTTGTATATGGTTCAATAGAT 3252012
Query 138571 TCGTTGTTTCCCAGAATCTGAGCCGTGGTCGCGGTCGGCATGTACGCCACCAAAAGAGAA 138630
|||||||| |||| ||||||||| || | || || |||||| ||| | || |||
Sbjct 3252013 TCGTTGTTCCCCAAAATCTGAGCAGTTGATGCTGTAGGCATGGGCGCTAATAACAGACTG 3252072
Query 138631 TTCCGTAAACCGTGA--AGCTTGATTCGTTCCTTGAGCGACGACCAGTCCCACAAATCGC 138688
|| || | ||| || ||| || | ||| ||| | ||||||||||| ||
Sbjct 3252073 TTTCGAAGACCATGTTTAGCAATTTTACT--CTTCAGCTCTGTCCAGTCCCACAGATTAG 3252130
Query 138689 TAGGTTTTTTGTTCCACATATCGTACTGTAACATTCCCAAACTTGCGGGACTGCCTTCGT 138748
||| || ||||||||| || || || || || | |||||| ||| | |
Sbjct 3252131 ATGGTGTTACACCCCACATATCATATTGCAAAATCCCTTTAGAAGCGGGAGATCCTGCAT 3252190
Query 138749 ACGAATCGTATACACCAAACTCTTGCGCCAACTCGTTGCTCGCCTCGAGCGCACCATAGT 138808
| | ||||| || | |||| || | ||| || || ||||| || ||||| |
Sbjct 3252191 AAGTTTCGTAAGGTCCGAGTTCTTCAGCGAGCTCACAACTTGCTTCGAGAGCTCCATAAT 3252250
Query 138809 AAATAGTTTCGGCAATCTGCTGATTGAGCAAT---CGGGCCTCGGCGCTCTCGTACGGCA 138865
| || || || || || ||| |||| || || || | ||| || | ||
Sbjct 3252251 AGATTGTCTCAAAGATTTGGACATT---CAATTTACGAGCTTCTGGGCTGTCAAATGGAT 3252307
Query 138866 TGCGGAGCATCGTGAACGCGTCGGCCAGCCCTTGCACGCCCACTCCGACAGGGCGATGGC 138925
| | | || ||||| || | ||||| || || | || | ||| ||||
Sbjct 3252308 ATCTCATTAAAAGAAATGCGTCTGCTAAGCCTTGAACTCCTAAGCCAATAGGTCGATTCT 3252367
Query 138926 GCAGATTTGACGCTTTTGCGGCTTCGAT---AGGATAATAGTTTACATCGATGATTTTGT 138982
||||| | | |||||| | ||||||| |||| | || || |||||||
Sbjct 3252368 TTTTGTTTGAA---TAAGAGGCTTCCTTTAGAGGATAAAAGTTGATCTCAATAATTTTGT 3252424
Query 138983 TTAAATTTCGCACGACCACCTTAGTCGTATGCTTTAATCGTTCAAAATCGTATGTGCCCC 139042
|||||||||| |||| | || || | || | || | ||||||| || |
Sbjct 3252425 TTAAATTTCGTGTGACCGCTTTGGTAACTTCTTTGAGTCTTGCAAAATCAAATTT----- 3252479
Query 139043 CGTTGTCGTCGACGACGTCGACAAATTTGTTGACACAAATCGAGGCTATGTTGCACACCG 139102
|||| || || || |||||||| || | || ||||| | || || || |
Sbjct 3252480 --TTGT--TCCTCG--GTA-ACAAATTTTTTCAAGGCTATAGAGGCAAGATTACAAACAG 3252532
Query 139103 CCACTTCGTCGGGGTCGCTGTATTCGACAATTTCGGCACACAAATTACTACACTTGATCG 139162
| ||||| || ||| | || ||||| |||||||| | |||| ||| ||||||||| |
Sbjct 3252533 CAACTTCATCAGGGGCACTATATTCAACAATTTCAGTGCACAGATTTGAACACTTGATGG 3252592
Query 139163 TACCTAAATTTTGTTGATTGCTTTTTCGGTTACAAGCATCTTTGTAAAGCATATACGGTG 139222
| || | ||||| |||||| ||| |||||| |||||| ||||||||||||||
Sbjct 3252593 TTCCAAGATTTTTCTGATTGGACTTTTCATTACAATGATCTTTATAAAGCATATACGGAA 3252652
Query 139223 TGCCAGTTTCCACTTGTGTCTCTATAATGAAT--TTGAACAAG-TCCCTAGCTTGTATTT 139279
|||||||||| || | || ||||| | ||| ||| | | ||||| |||||
Sbjct 3252653 CACCAGTTTCCATCTGGGCATC---AATGATTGCTTGCCAAAGAGCTCGAGCTTTTATTT 3252709
Query 139280 GACGCACGTAAAGTTCGTCGCGCTCGTACTTTTCGTAGAGTTCGTCGAATCGTTCACCGT 139339
| | ||| || || || || || | || || | | |||| || || |
Sbjct 3252710 GCTGATTGTATCTTTTTTCTTCTTCATATTTAACATAAAGCTTATTGAATTCATCTCCAT 3252769
Query 139340 AGGCGTCAGAAAGATCGCGACACTTGTCAGGACACATGAGCGACCATACGCCGTTCGCCT 139399
| | || | ||| | |||| |||| |||||||| || ||| | | | |
Sbjct 3252770 AAACTTCGAATAGACCAGGACATTTGTGTGGACACATAAGACTCCACATTTCATCTTTTT 3252829
Query 139400 TGACGCGCCTCATGAACAGATCCGGAATCCACAAAGCGAACAGCAAATCGCGCGCCTTCT 139459
| || ||| ||| || |||| || | ||| | ||| || | |||||| || || ||
Sbjct 3252830 TAACTCGCTCCATAAAAAGATTAGGCACCCAAAGAGCTAAAAACAAATCTCGAGCTCTCA 3252889
Query 139460 TATCTTCCGAACCCATGTTACGTTTCATGTTAAGGAAATCAAAAACGTCAGCGTGCCATG 139519
| ||||| ||| |||| | | | | ||||||||||| || ||||| ||||| |
Sbjct 3252890 TCTCTTCTTTACCAGTGTTTTTTCTTAAGCATAGGAAATCAAAGACATCAGCATGCCAAG 3252949
Query 139520 GTTCCAGATAGATGGCCATTGCGCCTTTCCGTTTGCCACCTTGATCGACGTGTCGTACAG 139579
| || | ||| || || || ||| ||||| || ||||| | ||| | || |||
Sbjct 3252950 GCTCAATATAAATAGCATAAGCTCCTGGTCGTTTACCCCCTTGGTTGACATAACGAGCAG 3253009
Query 139580 CATTATTGAATACGCGCAACATCGGCTCCAGACCGCTCGCTGTTCCGTTGGTGCTACGGA 139639
| ||| || | || ||| ||| | ||||| | || || || | | ||
Sbjct 3253010 ATTCATTAAACATTTTCAGCATAGGCACGAGACCATCAGAGAAACCATTTGTCCCTCTGA 3253069
Query 139640 T--GGGACTGTTGCGAGCTCGGACGTCATGTACATTGATGCCGATTCCGCCGCCAAATTT 139697
| ||| || | ||||| | ||| ||||||| || ||||| || || ||||
Sbjct 3253070 TTCGGGTTCCTTTC--GCTCGAATACAATGAACATTGAGACCAATTCCACCAGCATATTT 3253127
Query 139698 GGATATTAAAACGCAATCGCGTAATGTCTCGTATATACCTCTTATGCTGTCGTCCTGCAT 139757
|| || ||| ||||| || || ||| |||| ||| || || || ||| |||
Sbjct 3253128 AGAAATCAAATTACAATCTTTCAAAGTATCGGATATTCCTTCAATACTATCTTCCCTCAT 3253187
Query 139758 CGTGACCAGAAAGCATGACGAAAGTTGCGGTAGTTTCGTGCCGGCTGCAAACAGAGTAGG 139817
| | ||||| || || || || ||| | || || || ||| || |||||
Sbjct 3253188 TGATAAAAGAAAACAACTAGATAGCTGAGGTCGAGGTGTACCAGCATTAAAAAGGGTAGG 3253247
Query 139818 ACTCGCGTGCGTGAACATTTGTTTCGACATCAATTCGTACGTTTCGATGGCGCTCACAAT 139877
| || || || ||| || || ||||| |||||||| || | | ||| ||||
Sbjct 3253248 AGAAGCATGTGTAAACCATTTTTGAGACATTAATTCGTAGGTCTGTAAGGCTGATTCAAT 3253307
Query 139878 ATCCCTTCCGTGGATACCGACAGAGACTCGCATCAGCATATGTTG 139922
||| ||| || || || |||| |||| ||| |||||||||||
Sbjct 3253308 ATCAGATCCATGAATTCCAACAGCAACTCTCATTAGCATATGTTG 3253352
>seq444
Length=5217058
Score = 140 bits (154), Expect = 3e-28
Identities = 172/231 (74%), Gaps = 8/231 (3%)
Strand=Plus/Minus
Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763
||||| || || | ||||| || || ||||| || ||||| || || || ||| | |
Sbjct 3542027 ATGCAAATTTTCGTAAAAACTCTTACTGGTAAGACCATTACACTTGAGGTTGAACCTTCT 3541968
Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823
|| || | |||| || ||| || ||||||||||||||||| || || || || |||
Sbjct 3541967 GATACTATTGAAAACGTGAAAGCCAAAATCCAAGACAAAGAAGGTATCCCACCTGACCAA 3541908
Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGA--TTCGAGAAACATGTCA--GATTA 24879
|||||||||||||| || || |||||||| ||||| ||| || | ||| |||||
Sbjct 3541907 CAACGTTTGATCTTCGCTGGTAAACAGCTCGAGGACGGTCG---TAC-TCTCAGTGATTA 3541852
Query 24880 TAACATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGG 24930
||| |||||||| ||||| || || |||||||| |||||| | || || ||
Sbjct 3541851 TAATATTCAAAAAGAATCTACCCTTCACTTGGTCTTGCGACTTCGTGGTGG 3541801
Score = 134 bits (148), Expect = 1e-26
Identities = 166/227 (73%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763
||||| || || | || || || || || ||||| || || || || || ||| | |
Sbjct 3542603 ATGCAAATTTTCGTCAAGACTCTTACTGGAAAAACCATCACCCTTGAGGTTGAACCATCG 3542544
Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823
||||| | |||| || ||| |||||||||||||| ||||| || || |||||||||
Sbjct 3542543 GACACTATTGAAAATGTTAAAGCCAAGATCCAAGACAAGGAAGGTATCCCACCCGATCAA 3542484
Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883
|| ||||||||||| || || |||||||| || ||| | | | || ||||| |||
Sbjct 3542483 CAGCGTTTGATCTTCGCTGGTAAACAGCTTGAAGATGGACGTACCCTGAGCGATTACAAC 3542424
Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGG 24930
|||||||| || || || || |||||||| || ||| | || || ||
Sbjct 3542423 ATTCAAAAAGAGTCTACCCTTCACTTGGTCTTACGACTTCGTGGTGG 3542377
Score = 131 bits (144), Expect = 2e-25
Identities = 165/227 (73%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763
||||| || || | ||||| || || |||||||| || || | ||||| ||| | ||
Sbjct 3541799 ATGCAAATTTTCGTCAAAACCCTCACTGGTAAAACCATCACCTTGGAAGTTGAACCTTCC 3541740
Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823
||||| | |||| || || || ||||||||||| |||||||| || || ||||||
Sbjct 3541739 GACACCATTGAAAATGTCAAGGCTAAAATCCAAGACAAGGAAGGAATCCCACCTGATCAA 3541680
Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883
|| ||| | ||||| || || |||||||| |||||| ||| | | || || || |||
Sbjct 3541679 CAGCGTCTCATCTTCGCTGGTAAACAGCTTGAGGATGGTCGAACCCTTTCTGACTACAAC 3541620
Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGG 24930
||||| || ||||| || |||| || || || ||| | || || ||
Sbjct 3541619 ATTCAGAAAGAATCAACTTTACATTTAGTATTACGACTTCGTGGTGG 3541573
Score = 109 bits (120), Expect = 5e-19
Identities = 139/189 (74%), Gaps = 2/189 (1%)
Strand=Plus/Minus
Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763
||||| || || ||||||| || || || ||||| ||||| | ||||| ||| | ||
Sbjct 3542375 ATGCAAATTTTCGTTAAAACCCTCACTGGAAAAACCATTACTTTGGAAGTTGAACCTTCC 3542316
Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823
|| || | |||| || || || ||||| ||||| ||||| || || ||||| |||
Sbjct 3542315 GATACCATTGAAAACGTCAAGGCTAAAATCCAGGACAAGGAAGGTATTCCCCCCGACCAA 3542256
Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACA-TGTCAGATTATAA 24882
|||||||||||||| || || ||||| || || || | || ||| | || ||||||||
Sbjct 3542255 CAACGTTTGATCTTCGCTGGAAAACAACTCGAAGA-TGGACGTACATTATCTGATTATAA 3542197
Query 24883 CATTCAAAA 24891
|| |||||
Sbjct 3542196 TATCCAAAA 3542188
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 449893995195480
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