Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tetranychus_20urticae_20[refseq_20GCF_5F000239435.1_202011-12-20] 641 sequences; 90,828,597 total letters Query= NC_021923.1 Length=140633 Score E Sequences producing significant alignments: (Bits) Value seq442 158 1e-33 seq444 140 3e-28 >seq442 Length=7801961 Score = 158 bits (174), Expect = 1e-33 Identities = 1117/1785 (63%), Gaps = 44/1785 (2%) Strand=Plus/Plus Query 138154 TTATCTACAGTAAACTTTATGGCATCAGCGGCTGGTTTCGTTCTCAGATAATACATTCCC 138213 ||||| |||||||| | || |||| || || ||||| ||| | || ||||| || Sbjct 3251596 TTATCAACAGTAAATTGGATAGCATTTGCAGCAGGTTTACTTCGTAAGTAGTACATGCCT 3251655 Query 138214 GTTTTTAACCCATTTTCCCAGGCGTACATGTGTATCGAAGTGAGTAACGCGTAAGTCGGT 138273 || || | |||| |||||| | || | || ||||| || | | || || ||| Sbjct 3251656 GTCTTAAGCCCAAGCTCCCAGCCATAGAAATGCATCGAGGTCATTTTAGCAACAGAAGGT 3251715 Query 138274 TTCGCCAGA--AATATGTTAAACGATTGACTCTGATCGATGAAAGCGCCTCGATCAATGG 138331 | | | | ||||| ||||| |||||||| ||||| || ||||| || || ||| | Sbjct 3251716 CTTTCAAAATGAATAT-TTAAA-GATTGACTTTGATCAATAAAAGCTCCACGTTCAGCAG 3251773 Query 138332 CCATGTTAATTAAATTTTTACTTTTCATCTCCCACACGGTCTTGTATAGATCACGAATAT 138391 |||| | | | |||||| || ||||| || || || | | ||||| Sbjct 3251774 CCATTTCCAGAATATTTTTTTGAGGAATTTCCCAAACAGTTCGATACAATTGCTTAATAT 3251833 Query 138392 GTCGCGGTATTGTTGCAATATTTTGAATGCTCCCGTTGGCCGCAATGATGCGATTTCTCA 138451 || || | ||||| ||||||| || || ||| || | | ||||| Sbjct 3251834 CCTCTGGGATACCTTCAATAGCTTGAATGGAGCCTCTGTGATAAATAATCTGTTCTCTCA 3251893 Query 138452 TGTCATCGTTGTACAGAT-TCAACTTGATCAAGTCGTTTATCAGATATCTGTTTATGACC 138510 |||| || || | || | || | | |||| || || | |||| ||| | || Sbjct 3251894 TGTCTTCATTCCAAAGTTCTCGATCAG-TCAAATCTTTGACAAGATGGTGGTTAACTACT 3251952 Query 138511 TGAAATTCACCGGCCAATACTCGACGAACGTAAATGTTGTTGGTGAAAGGCTCAAACGAT 138570 ||||||||||| | | ||||| ||| || ||||| | || | || |||| ||| Sbjct 3251953 TGAAATTCACCAGAAAGAACTCGTCGAGTATAGATGTTACTTGTATATGGTTCAATAGAT 3252012 Query 138571 TCGTTGTTTCCCAGAATCTGAGCCGTGGTCGCGGTCGGCATGTACGCCACCAAAAGAGAA 138630 |||||||| |||| ||||||||| || | || || |||||| ||| | || ||| Sbjct 3252013 TCGTTGTTCCCCAAAATCTGAGCAGTTGATGCTGTAGGCATGGGCGCTAATAACAGACTG 3252072 Query 138631 TTCCGTAAACCGTGA--AGCTTGATTCGTTCCTTGAGCGACGACCAGTCCCACAAATCGC 138688 || || | ||| || ||| || | ||| ||| | ||||||||||| || Sbjct 3252073 TTTCGAAGACCATGTTTAGCAATTTTACT--CTTCAGCTCTGTCCAGTCCCACAGATTAG 3252130 Query 138689 TAGGTTTTTTGTTCCACATATCGTACTGTAACATTCCCAAACTTGCGGGACTGCCTTCGT 138748 ||| || ||||||||| || || || || || | |||||| ||| | | Sbjct 3252131 ATGGTGTTACACCCCACATATCATATTGCAAAATCCCTTTAGAAGCGGGAGATCCTGCAT 3252190 Query 138749 ACGAATCGTATACACCAAACTCTTGCGCCAACTCGTTGCTCGCCTCGAGCGCACCATAGT 138808 | | ||||| || | |||| || | ||| || || ||||| || ||||| | Sbjct 3252191 AAGTTTCGTAAGGTCCGAGTTCTTCAGCGAGCTCACAACTTGCTTCGAGAGCTCCATAAT 3252250 Query 138809 AAATAGTTTCGGCAATCTGCTGATTGAGCAAT---CGGGCCTCGGCGCTCTCGTACGGCA 138865 | || || || || || ||| |||| || || || | ||| || | || Sbjct 3252251 AGATTGTCTCAAAGATTTGGACATT---CAATTTACGAGCTTCTGGGCTGTCAAATGGAT 3252307 Query 138866 TGCGGAGCATCGTGAACGCGTCGGCCAGCCCTTGCACGCCCACTCCGACAGGGCGATGGC 138925 | | | || ||||| || | ||||| || || | || | ||| |||| Sbjct 3252308 ATCTCATTAAAAGAAATGCGTCTGCTAAGCCTTGAACTCCTAAGCCAATAGGTCGATTCT 3252367 Query 138926 GCAGATTTGACGCTTTTGCGGCTTCGAT---AGGATAATAGTTTACATCGATGATTTTGT 138982 ||||| | | |||||| | ||||||| |||| | || || ||||||| Sbjct 3252368 TTTTGTTTGAA---TAAGAGGCTTCCTTTAGAGGATAAAAGTTGATCTCAATAATTTTGT 3252424 Query 138983 TTAAATTTCGCACGACCACCTTAGTCGTATGCTTTAATCGTTCAAAATCGTATGTGCCCC 139042 |||||||||| |||| | || || | || | || | ||||||| || | Sbjct 3252425 TTAAATTTCGTGTGACCGCTTTGGTAACTTCTTTGAGTCTTGCAAAATCAAATTT----- 3252479 Query 139043 CGTTGTCGTCGACGACGTCGACAAATTTGTTGACACAAATCGAGGCTATGTTGCACACCG 139102 |||| || || || |||||||| || | || ||||| | || || || | Sbjct 3252480 --TTGT--TCCTCG--GTA-ACAAATTTTTTCAAGGCTATAGAGGCAAGATTACAAACAG 3252532 Query 139103 CCACTTCGTCGGGGTCGCTGTATTCGACAATTTCGGCACACAAATTACTACACTTGATCG 139162 | ||||| || ||| | || ||||| |||||||| | |||| ||| ||||||||| | Sbjct 3252533 CAACTTCATCAGGGGCACTATATTCAACAATTTCAGTGCACAGATTTGAACACTTGATGG 3252592 Query 139163 TACCTAAATTTTGTTGATTGCTTTTTCGGTTACAAGCATCTTTGTAAAGCATATACGGTG 139222 | || | ||||| |||||| ||| |||||| |||||| |||||||||||||| Sbjct 3252593 TTCCAAGATTTTTCTGATTGGACTTTTCATTACAATGATCTTTATAAAGCATATACGGAA 3252652 Query 139223 TGCCAGTTTCCACTTGTGTCTCTATAATGAAT--TTGAACAAG-TCCCTAGCTTGTATTT 139279 |||||||||| || | || ||||| | ||| ||| | | ||||| ||||| Sbjct 3252653 CACCAGTTTCCATCTGGGCATC---AATGATTGCTTGCCAAAGAGCTCGAGCTTTTATTT 3252709 Query 139280 GACGCACGTAAAGTTCGTCGCGCTCGTACTTTTCGTAGAGTTCGTCGAATCGTTCACCGT 139339 | | ||| || || || || || | || || | | |||| || || | Sbjct 3252710 GCTGATTGTATCTTTTTTCTTCTTCATATTTAACATAAAGCTTATTGAATTCATCTCCAT 3252769 Query 139340 AGGCGTCAGAAAGATCGCGACACTTGTCAGGACACATGAGCGACCATACGCCGTTCGCCT 139399 | | || | ||| | |||| |||| |||||||| || ||| | | | | Sbjct 3252770 AAACTTCGAATAGACCAGGACATTTGTGTGGACACATAAGACTCCACATTTCATCTTTTT 3252829 Query 139400 TGACGCGCCTCATGAACAGATCCGGAATCCACAAAGCGAACAGCAAATCGCGCGCCTTCT 139459 | || ||| ||| || |||| || | ||| | ||| || | |||||| || || || Sbjct 3252830 TAACTCGCTCCATAAAAAGATTAGGCACCCAAAGAGCTAAAAACAAATCTCGAGCTCTCA 3252889 Query 139460 TATCTTCCGAACCCATGTTACGTTTCATGTTAAGGAAATCAAAAACGTCAGCGTGCCATG 139519 | ||||| ||| |||| | | | | ||||||||||| || ||||| ||||| | Sbjct 3252890 TCTCTTCTTTACCAGTGTTTTTTCTTAAGCATAGGAAATCAAAGACATCAGCATGCCAAG 3252949 Query 139520 GTTCCAGATAGATGGCCATTGCGCCTTTCCGTTTGCCACCTTGATCGACGTGTCGTACAG 139579 | || | ||| || || || ||| ||||| || ||||| | ||| | || ||| Sbjct 3252950 GCTCAATATAAATAGCATAAGCTCCTGGTCGTTTACCCCCTTGGTTGACATAACGAGCAG 3253009 Query 139580 CATTATTGAATACGCGCAACATCGGCTCCAGACCGCTCGCTGTTCCGTTGGTGCTACGGA 139639 | ||| || | || ||| ||| | ||||| | || || || | | || Sbjct 3253010 ATTCATTAAACATTTTCAGCATAGGCACGAGACCATCAGAGAAACCATTTGTCCCTCTGA 3253069 Query 139640 T--GGGACTGTTGCGAGCTCGGACGTCATGTACATTGATGCCGATTCCGCCGCCAAATTT 139697 | ||| || | ||||| | ||| ||||||| || ||||| || || |||| Sbjct 3253070 TTCGGGTTCCTTTC--GCTCGAATACAATGAACATTGAGACCAATTCCACCAGCATATTT 3253127 Query 139698 GGATATTAAAACGCAATCGCGTAATGTCTCGTATATACCTCTTATGCTGTCGTCCTGCAT 139757 || || ||| ||||| || || ||| |||| ||| || || || ||| ||| Sbjct 3253128 AGAAATCAAATTACAATCTTTCAAAGTATCGGATATTCCTTCAATACTATCTTCCCTCAT 3253187 Query 139758 CGTGACCAGAAAGCATGACGAAAGTTGCGGTAGTTTCGTGCCGGCTGCAAACAGAGTAGG 139817 | | ||||| || || || || ||| | || || || ||| || ||||| Sbjct 3253188 TGATAAAAGAAAACAACTAGATAGCTGAGGTCGAGGTGTACCAGCATTAAAAAGGGTAGG 3253247 Query 139818 ACTCGCGTGCGTGAACATTTGTTTCGACATCAATTCGTACGTTTCGATGGCGCTCACAAT 139877 | || || || ||| || || ||||| |||||||| || | | ||| |||| Sbjct 3253248 AGAAGCATGTGTAAACCATTTTTGAGACATTAATTCGTAGGTCTGTAAGGCTGATTCAAT 3253307 Query 139878 ATCCCTTCCGTGGATACCGACAGAGACTCGCATCAGCATATGTTG 139922 ||| ||| || || || |||| |||| ||| ||||||||||| Sbjct 3253308 ATCAGATCCATGAATTCCAACAGCAACTCTCATTAGCATATGTTG 3253352 >seq444 Length=5217058 Score = 140 bits (154), Expect = 3e-28 Identities = 172/231 (74%), Gaps = 8/231 (3%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||| || || | ||||| || || ||||| || ||||| || || || ||| | | Sbjct 3542027 ATGCAAATTTTCGTAAAAACTCTTACTGGTAAGACCATTACACTTGAGGTTGAACCTTCT 3541968 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 || || | |||| || ||| || ||||||||||||||||| || || || || ||| Sbjct 3541967 GATACTATTGAAAACGTGAAAGCCAAAATCCAAGACAAAGAAGGTATCCCACCTGACCAA 3541908 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGA--TTCGAGAAACATGTCA--GATTA 24879 |||||||||||||| || || |||||||| ||||| ||| || | ||| ||||| Sbjct 3541907 CAACGTTTGATCTTCGCTGGTAAACAGCTCGAGGACGGTCG---TAC-TCTCAGTGATTA 3541852 Query 24880 TAACATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGG 24930 ||| |||||||| ||||| || || |||||||| |||||| | || || || Sbjct 3541851 TAATATTCAAAAAGAATCTACCCTTCACTTGGTCTTGCGACTTCGTGGTGG 3541801 Score = 134 bits (148), Expect = 1e-26 Identities = 166/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||| || || | || || || || || ||||| || || || || || ||| | | Sbjct 3542603 ATGCAAATTTTCGTCAAGACTCTTACTGGAAAAACCATCACCCTTGAGGTTGAACCATCG 3542544 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | |||| || ||| |||||||||||||| ||||| || || ||||||||| Sbjct 3542543 GACACTATTGAAAATGTTAAAGCCAAGATCCAAGACAAGGAAGGTATCCCACCCGATCAA 3542484 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || ||||||||||| || || |||||||| || ||| | | | || ||||| ||| Sbjct 3542483 CAGCGTTTGATCTTCGCTGGTAAACAGCTTGAAGATGGACGTACCCTGAGCGATTACAAC 3542424 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGG 24930 |||||||| || || || || |||||||| || ||| | || || || Sbjct 3542423 ATTCAAAAAGAGTCTACCCTTCACTTGGTCTTACGACTTCGTGGTGG 3542377 Score = 131 bits (144), Expect = 2e-25 Identities = 165/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||| || || | ||||| || || |||||||| || || | ||||| ||| | || Sbjct 3541799 ATGCAAATTTTCGTCAAAACCCTCACTGGTAAAACCATCACCTTGGAAGTTGAACCTTCC 3541740 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | |||| || || || ||||||||||| |||||||| || || |||||| Sbjct 3541739 GACACCATTGAAAATGTCAAGGCTAAAATCCAAGACAAGGAAGGAATCCCACCTGATCAA 3541680 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || ||| | ||||| || || |||||||| |||||| ||| | | || || || ||| Sbjct 3541679 CAGCGTCTCATCTTCGCTGGTAAACAGCTTGAGGATGGTCGAACCCTTTCTGACTACAAC 3541620 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGG 24930 ||||| || ||||| || |||| || || || ||| | || || || Sbjct 3541619 ATTCAGAAAGAATCAACTTTACATTTAGTATTACGACTTCGTGGTGG 3541573 Score = 109 bits (120), Expect = 5e-19 Identities = 139/189 (74%), Gaps = 2/189 (1%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||| || || ||||||| || || || ||||| ||||| | ||||| ||| | || Sbjct 3542375 ATGCAAATTTTCGTTAAAACCCTCACTGGAAAAACCATTACTTTGGAAGTTGAACCTTCC 3542316 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 || || | |||| || || || ||||| ||||| ||||| || || ||||| ||| Sbjct 3542315 GATACCATTGAAAACGTCAAGGCTAAAATCCAGGACAAGGAAGGTATTCCCCCCGACCAA 3542256 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACA-TGTCAGATTATAA 24882 |||||||||||||| || || ||||| || || || | || ||| | || |||||||| Sbjct 3542255 CAACGTTTGATCTTCGCTGGAAAACAACTCGAAGA-TGGACGTACATTATCTGATTATAA 3542197 Query 24883 CATTCAAAA 24891 || ||||| Sbjct 3542196 TATCCAAAA 3542188 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 449893995195480