Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tetranychus_20urticae_20[refseq_20GCF_5F000239435.1_202011-12-20] 641 sequences; 90,828,597 total letters Query= NC_021924.1 Length=129052 Score E Sequences producing significant alignments: (Bits) Value seq442 127 2e-24 seq444 86.0 5e-12 >seq442 Length=7801961 Score = 127 bits (140), Expect = 2e-24 Identities = 247/360 (69%), Gaps = 6/360 (2%) Strand=Plus/Plus Query 34287 GATAATGTTCTTTTTAGC--GGACACGATGAGCTCAGTCTCCGGGTTGTCACATTCCGGA 34344 ||||||||| || || | | |||| | ||| | ||||| ||||||| ||| |||| Sbjct 5646611 GATAATGTTTTTCTTGGTAAGTACACCA--AGCACGGTCTCTGGGTTGTGGCATGACGGA 5646668 Query 34345 CACAACACAAACTTGCGGATGAAACCATCAAGCAGGTCCTGTAACTTAACGGAGTCGTGG 34404 || || || |||| | || || ||||| | || || || | ||| || || || Sbjct 5646669 CATAAAACGTACTTTTGAATAAATCCATCCAAGAGATCTTGAAGTTTATTTGATTCATGA 5646728 Query 34405 GAGCCGTTGACGATGAATCGTTCGTTTTTGTAATCGACCTGCGTTTGCGCGCCCAGCTCG 34464 ||||| || || || |||| || ||||| ||| | ||| || || || || Sbjct 5646729 GAGCCATTCACAATATATCGCTCATTTTTCGGATCATAATTTACTTGGGCACCAAGTACG 5646788 Query 34465 CACCCGAAGTACTTTGTCGGGTAAATGGCCGGACGTCCAAGCGCCTTGGCGATTTCGGGC 34524 || |||||||| || || || || |||| ||||| || | |||||| || ||| | Sbjct 5646789 CAACCGAAGTATTTAGTAGGATACATGGGTGGACGATTGAGAGACTTGGCAATGTCGACC 5646848 Query 34525 ATGTTGACGATGACAGTCTTGATGCCGTTGCCCTTTCCTTCGACCTTGGCGCAGATGC-G 34583 ||||||||||| || ||||| || || ||||| ||||| || || || || || | || Sbjct 5646849 ATGTTGACGATAACCGTCTTAATACCATTGCCTTTTCCCTCAACTTTTGC-CAAAAGCTT 5646907 Query 34584 CGGCATTTTGTAGCGGTAGAACGCGTCCGCCACATTGCGGTTAACGTTCACAGTCCCCAT 34643 ||||||||||| |||||||| |||| | | | ||||| || || ||| | |||| Sbjct 5646908 GGGCATTTTGTATCGGTAGAATTGATCCGAGAGACTACGGTTGACATTAACACACGCCAT 5646967 >seq444 Length=5217058 Score = 86.0 bits (94), Expect = 5e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGAC 110332 |||||||| || |||||||| | || || |||||||| ||| | ||| || ||| | Sbjct 3541799 ATGCAAATTTTCGTCAAAACCCTCACTGGTAAAACCATCACCTTGGAAGTTGAACCTTCC 3541740 Query 110333 GATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCAA 110392 || || | | | || || || || ||||| ||||| | || |||||| Sbjct 3541739 GACACCATTGAAAATGTCAAGGCTAAAATCCAAGACAAGGAAGGAATCCCACCTGATCAA 3541680 Query 110393 CAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAAC 110452 || | || || | || ||||||||||| ||||||| |||| | | || |||||| Sbjct 3541679 CAGCGTCTCATCTTCGCTGGTAAACAGCTTGAGGATGGTCGAACCCTTTCTGACTACAAC 3541620 Query 110453 ATTCAAAAAGAATCTACGTTGCACATGGTGTTAAGACTGCGAGGGGG 110499 ||||| |||||||| || || || | || ||| |||| || || || Sbjct 3541619 ATTCAGAAAGAATCAACTTTACATTTAGTATTACGACTTCGTGGTGG 3541573 Score = 86.0 bits (94), Expect = 5e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGAC 110332 |||||||| || ||||| ||| | || || |||||||| ||| | || || || Sbjct 3542603 ATGCAAATTTTCGTCAAGACTCTTACTGGAAAAACCATCACCCTTGAGGTTGAACCATCG 3542544 Query 110333 GATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCAA 110392 || ||| | | | || ||| ||||| ||||| ||||| | || |||||| Sbjct 3542543 GACACTATTGAAAATGTTAAAGCCAAGATCCAAGACAAGGAAGGTATCCCACCCGATCAA 3542484 Query 110393 CAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAAC 110452 || | | || | || ||||||||||| || |||| | || || ||||||||| Sbjct 3542483 CAGCGTTTGATCTTCGCTGGTAAACAGCTTGAAGATGGACGTACCCTGAGCGATTACAAC 3542424 Query 110453 ATTCAAAAAGAATCTACGTTGCACATGGTGTTAAGACTGCGAGGGGG 110499 ||||||||||| ||||| | ||| |||| ||| |||| || || || Sbjct 3542423 ATTCAAAAAGAGTCTACCCTTCACTTGGTCTTACGACTTCGTGGTGG 3542377 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 412838374804013