Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tetranychus_20urticae_20[refseq_20GCF_5F000239435.1_202011-12-20] 641 sequences; 90,828,597 total letters Query= NC_023426.1 Length=245717 Score E Sequences producing significant alignments: (Bits) Value seq444 122 1e-22 >seq444 Length=5217058 Score = 122 bits (134), Expect = 1e-22 Identities = 156/215 (73%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091 ||||||| ||| | ||||| | || || ||||| || || | || || |||| | || Sbjct 3541798 TGCAAATTTTCGTCAAAACCCTCACTGGTAAAACCATCACCTTGGAAGTTGAACCTTCCG 3541739 Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151 | || ||| ||||||| || |||||| ||| || ||||| || ||||| ||||||| Sbjct 3541738 ACACCATTGAAAATGTCAAGGCTAAAATCCAAGACAAGGAAGGAATCCCACCTGATCAAC 3541679 Query 146152 AAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATA 146211 | | ||||| || || |||||||| | || ||| | |||| | | || || || | Sbjct 3541678 AGCGTCTCATCTTCGCTGGTAAACAGCTTGAGGATGGTCGAACCCTTTCTGACTACAACA 3541619 Query 146212 TACAAAAAGAATCGACTATCCATTTAGTATTACGA 146246 | || |||||||| ||| | ||||||||||||||| Sbjct 3541618 TTCAGAAAGAATCAACTTTACATTTAGTATTACGA 3541584 Score = 114 bits (126), Expect = 2e-20 Identities = 162/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091 ||||||| ||| ||||||| | || || || || ||||| |||| || |||| | | Sbjct 3542026 TGCAAATTTTCGTAAAAACTCTTACTGGTAAGACCATTACACTTGAGGTTGAACCTTCTG 3541967 Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151 |||||||| |||| || ||| ||||| ||| |||||||| || ||||| || |||| Sbjct 3541966 ATACTATTGAAAACGTGAAAGCCAAAATCCAAGACAAAGAAGGTATCCCACCTGACCAAC 3541907 Query 146152 AAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATA 146211 || | | || || || |||||||| | || || | | || | | |||||||||| Sbjct 3541906 AACGTTTGATCTTCGCTGGTAAACAGCTCGAGGACGGTCGTACTCTCAGTGATTATAATA 3541847 Query 146212 TACAAAAAGAATCGACTATCCATTTAGTATTACGATTAAGAGGAGGTA 146259 | ||||||||||| || | || || || || ||| | | || |||| Sbjct 3541846 TTCAAAAAGAATCTACCCTTCACTTGGTCTTGCGACTTCGTGGTGGTA 3541799 Score = 111 bits (122), Expect = 2e-19 Identities = 138/189 (73%), Gaps = 0/189 (0%) Strand=Plus/Minus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091 ||||||| ||| | ||||| | || |||||||| |||||| | || || |||| | || Sbjct 3542374 TGCAAATTTTCGTTAAAACCCTCACTGGAAAAACCATTACTTTGGAAGTTGAACCTTCCG 3542315 Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151 |||| ||| |||| || || |||||| || || ||||| ||||| ||||| |||| Sbjct 3542314 ATACCATTGAAAACGTCAAGGCTAAAATCCAGGACAAGGAAGGTATTCCCCCCGACCAAC 3542255 Query 146152 AAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATA 146211 || | | || || || || |||||| | || ||| | || ||| | |||||||||| Sbjct 3542254 AACGTTTGATCTTCGCTGGAAAACAACTCGAAGATGGACGTACATTATCTGATTATAATA 3542195 Query 146212 TACAAAAAG 146220 | ||||||| Sbjct 3542194 TCCAAAAAG 3542186 Score = 91.5 bits (100), Expect = 2e-13 Identities = 157/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091 ||||||| ||| | || || | || |||||||| || || |||| || |||| | Sbjct 3542602 TGCAAATTTTCGTCAAGACTCTTACTGGAAAAACCATCACCCTTGAGGTTGAACCATCGG 3542543 Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151 | |||||| ||||||| ||| || || ||| || ||||| || ||||||||||||| Sbjct 3542542 ACACTATTGAAAATGTTAAAGCCAAGATCCAAGACAAGGAAGGTATCCCACCCGATCAAC 3542483 Query 146152 AAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATA 146211 | | | || || || |||||||| | || ||| | || | | ||||| || | Sbjct 3542482 AGCGTTTGATCTTCGCTGGTAAACAGCTTGAAGATGGACGTACCCTGAGCGATTACAACA 3542423 Query 146212 TACAAAAAGAATCGACTATCCATTTAGTATTACGATTAAGAGGAGGTA 146259 | |||||||| || || | || || || |||||| | | || |||| Sbjct 3542422 TTCAAAAAGAGTCTACCCTTCACTTGGTCTTACGACTTCGTGGTGGTA 3542375 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 786160100841720