Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Tetranychus_20urticae_20[refseq_20GCF_5F000239435.1_202011-12-20]
641 sequences; 90,828,597 total letters
Query= NC_023426.1
Length=245717
Score E
Sequences producing significant alignments: (Bits) Value
seq444 122 1e-22
>seq444
Length=5217058
Score = 122 bits (134), Expect = 1e-22
Identities = 156/215 (73%), Gaps = 0/215 (0%)
Strand=Plus/Minus
Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091
||||||| ||| | ||||| | || || ||||| || || | || || |||| | ||
Sbjct 3541798 TGCAAATTTTCGTCAAAACCCTCACTGGTAAAACCATCACCTTGGAAGTTGAACCTTCCG 3541739
Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151
| || ||| ||||||| || |||||| ||| || ||||| || ||||| |||||||
Sbjct 3541738 ACACCATTGAAAATGTCAAGGCTAAAATCCAAGACAAGGAAGGAATCCCACCTGATCAAC 3541679
Query 146152 AAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATA 146211
| | ||||| || || |||||||| | || ||| | |||| | | || || || |
Sbjct 3541678 AGCGTCTCATCTTCGCTGGTAAACAGCTTGAGGATGGTCGAACCCTTTCTGACTACAACA 3541619
Query 146212 TACAAAAAGAATCGACTATCCATTTAGTATTACGA 146246
| || |||||||| ||| | |||||||||||||||
Sbjct 3541618 TTCAGAAAGAATCAACTTTACATTTAGTATTACGA 3541584
Score = 114 bits (126), Expect = 2e-20
Identities = 162/228 (71%), Gaps = 0/228 (0%)
Strand=Plus/Minus
Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091
||||||| ||| ||||||| | || || || || ||||| |||| || |||| | |
Sbjct 3542026 TGCAAATTTTCGTAAAAACTCTTACTGGTAAGACCATTACACTTGAGGTTGAACCTTCTG 3541967
Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151
|||||||| |||| || ||| ||||| ||| |||||||| || ||||| || ||||
Sbjct 3541966 ATACTATTGAAAACGTGAAAGCCAAAATCCAAGACAAAGAAGGTATCCCACCTGACCAAC 3541907
Query 146152 AAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATA 146211
|| | | || || || |||||||| | || || | | || | | ||||||||||
Sbjct 3541906 AACGTTTGATCTTCGCTGGTAAACAGCTCGAGGACGGTCGTACTCTCAGTGATTATAATA 3541847
Query 146212 TACAAAAAGAATCGACTATCCATTTAGTATTACGATTAAGAGGAGGTA 146259
| ||||||||||| || | || || || || ||| | | || ||||
Sbjct 3541846 TTCAAAAAGAATCTACCCTTCACTTGGTCTTGCGACTTCGTGGTGGTA 3541799
Score = 111 bits (122), Expect = 2e-19
Identities = 138/189 (73%), Gaps = 0/189 (0%)
Strand=Plus/Minus
Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091
||||||| ||| | ||||| | || |||||||| |||||| | || || |||| | ||
Sbjct 3542374 TGCAAATTTTCGTTAAAACCCTCACTGGAAAAACCATTACTTTGGAAGTTGAACCTTCCG 3542315
Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151
|||| ||| |||| || || |||||| || || ||||| ||||| ||||| ||||
Sbjct 3542314 ATACCATTGAAAACGTCAAGGCTAAAATCCAGGACAAGGAAGGTATTCCCCCCGACCAAC 3542255
Query 146152 AAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATA 146211
|| | | || || || || |||||| | || ||| | || ||| | ||||||||||
Sbjct 3542254 AACGTTTGATCTTCGCTGGAAAACAACTCGAAGATGGACGTACATTATCTGATTATAATA 3542195
Query 146212 TACAAAAAG 146220
| |||||||
Sbjct 3542194 TCCAAAAAG 3542186
Score = 91.5 bits (100), Expect = 2e-13
Identities = 157/228 (69%), Gaps = 0/228 (0%)
Strand=Plus/Minus
Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091
||||||| ||| | || || | || |||||||| || || |||| || |||| |
Sbjct 3542602 TGCAAATTTTCGTCAAGACTCTTACTGGAAAAACCATCACCCTTGAGGTTGAACCATCGG 3542543
Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151
| |||||| ||||||| ||| || || ||| || ||||| || |||||||||||||
Sbjct 3542542 ACACTATTGAAAATGTTAAAGCCAAGATCCAAGACAAGGAAGGTATCCCACCCGATCAAC 3542483
Query 146152 AAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATA 146211
| | | || || || |||||||| | || ||| | || | | ||||| || |
Sbjct 3542482 AGCGTTTGATCTTCGCTGGTAAACAGCTTGAAGATGGACGTACCCTGAGCGATTACAACA 3542423
Query 146212 TACAAAAAGAATCGACTATCCATTTAGTATTACGATTAAGAGGAGGTA 146259
| |||||||| || || | || || || |||||| | | || ||||
Sbjct 3542422 TTCAAAAAGAGTCTACCCTTCACTTGGTCTTACGACTTCGTGGTGGTA 3542375
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 786160100841720
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |