Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tetranychus_20urticae_20[refseq_20GCF_5F000239435.1_202011-12-20] 641 sequences; 90,828,597 total letters Query= NC_023442.1 Length=120420 Score E Sequences producing significant alignments: (Bits) Value seq444 138 9e-28 >seq444 Length=5217058 Score = 138 bits (152), Expect = 9e-28 Identities = 160/216 (74%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 29572 CGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAA 29631 |||| ||||| ||||| || |||||||||||||| |||||||| | || ||| Sbjct 3541813 CGCAAGACCAAGTGAAGGGTAGATTCTTTTTGAATATTATAATCACTGAGAGTACGACCG 3541872 Query 29632 TCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTG 29691 || ||||| ||||| ||||| | ||||| | ||| || || || || ||||| |||||| Sbjct 3541873 TCCTCGAGCTGTTTACCAGCGAAGATCAAACGTTGTTGGTCAGGTGGGATACCTTCTTTG 3541932 Query 29692 TCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATA 29751 ||||| | ||| ||| || |||| | ||| |||||| |||| || ||||| || || Sbjct 3541933 TCTTGGATTTTGGCTTTCACGTTTTCAATAGTATCAGAAGGTTCAACCTCAAGTGTAATG 3541992 Query 29752 GTTTTGCCAGTTAAGGTTTTAACAAATATCTGCATT 29787 || || ||||| | ||||| || || || |||||| Sbjct 3541993 GTCTTACCAGTAAGAGTTTTTACGAAAATTTGCATT 3542028 Score = 120 bits (132), Expect = 2e-22 Identities = 152/209 (73%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 29578 ACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAATCATCG 29637 ||||| ||||| || || |||||||||||||| ||||| | ||| || ||| || Sbjct 3542395 ACCAAGTGAAGGGTAGACTCTTTTTGAATGTTGTAATCGCTCAGGGTACGTCCATCTTCA 3542454 Query 29638 AGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTGTCTTGT 29697 || ||||| ||||| | ||||| | || ||||| || || ||||| || |||||||| Sbjct 3542455 AGCTGTTTACCAGCGAAGATCAAACGCTGTTGATCGGGTGGGATACCTTCCTTGTCTTGG 3542514 Query 29698 AATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATAGTTTTG 29757 | || ||| ||| |||| | |||||| || |||| || ||||| || || ||||| Sbjct 3542515 ATCTTGGCTTTAACATTTTCAATAGTGTCCGATGGTTCAACCTCAAGGGTGATGGTTTTT 3542574 Query 29758 CCAGTTAAGGTTTTAACAAATATCTGCAT 29786 ||||| | || || || || || ||||| Sbjct 3542575 CCAGTAAGAGTCTTGACGAAAATTTGCAT 3542603 Score = 118 bits (130), Expect = 8e-22 Identities = 140/190 (74%), Gaps = 0/190 (0%) Strand=Plus/Plus Query 29597 CTTTTTGAATGTTATAATCCGCAATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATA 29656 ||||||| || |||||||| | | || || ||| ||||||||||| ||||| | | Sbjct 3542186 CTTTTTGGATATTATAATCAGATAATGTACGTCCATCTTCGAGTTGTTTTCCAGCGAAGA 3542245 Query 29657 TCAATCTTTGCTGATCCGGCGGAATACCCTCTTTGTCTTGTAATTTTTGTTTGACAGTTT 29716 |||| | ||| || || || |||||||| || ||||| || | ||| ||||| ||| Sbjct 3542246 TCAAACGTTGTTGGTCGGGGGGAATACCTTCCTTGTCCTGGATTTTAGCCTTGACGTTTT 3542305 Query 29717 CTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAA 29776 | | || || ||| |||| ||||| | ||| || ||||| ||||| | ||||||||| | Sbjct 3542306 CAATGGTATCGGAAGGTTCAACTTCCAAAGTAATGGTTTTTCCAGTGAGGGTTTTAACGA 3542365 Query 29777 ATATCTGCAT 29786 | || ||||| Sbjct 3542366 AAATTTGCAT 3542375 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 385216190595381