Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Tetranychus_20urticae_20[refseq_20GCF_5F000239435.1_202011-12-20]
641 sequences; 90,828,597 total letters
Query= NC_023611.1
Length=198533
Score E
Sequences producing significant alignments: (Bits) Value
seq443 107 2e-18
seq448 98.7 1e-15
seq462 82.4 1e-10
>seq443
Length=6836010
Score = 107 bits (118), Expect = 2e-18
Identities = 158/224 (71%), Gaps = 0/224 (0%)
Strand=Plus/Minus
Query 168528 GAACTTTTATGGGTTATAAAAGGTTCAACTGATTCAAAACAATTAAATGATATAGGTGTT 168587
|||||| | ||| | || ||||| ||| | ||| ||| | || | ||| |||
Sbjct 506151 GAACTTCTGTGGTTCATTAAAGGGGAAACAAACAGCAAAATATTGCAAGAAAAAGGAGTT 506092
Query 168588 AAAGTTTGGAACGATAATGGTTCTCGTGAATTTTTAGATTTATGTGGTTTTACCGAAAGA 168647
| ||||| | | |||||| || ||||||||||||| |||||| | || |||
Sbjct 506091 CATATTTGGGATGCTAATGGATCGAAAGAATTTTTAGATTCTGTTGGTTTCTCAGATAGA 506032
Query 168648 AAAGAAGGTGATTTAGGTCCAATTTATGGATTTCAATGGAGACATGCAGGAGCTCAATAT 168707
||||||| ||||||||||| |||||||| ||||||||| ||||| || || |||||
Sbjct 506031 GAAGAAGGAGATTTAGGTCCTATTTATGGGTTTCAATGGCGACATTGGGGTGCCAAATAT 505972
Query 168708 ATTGACTGTGATACAGATTACACCGGACAAGGAGTAGACCAATT 168751
||||| ||||| |||| | || ||||| | ||||| ||
Sbjct 505971 ATTGATGCAAATACAAATTATTCTGGTCAAGGTATTGACCAGTT 505928
>seq448
Length=3678511
Score = 98.7 bits (108), Expect = 1e-15
Identities = 167/240 (70%), Gaps = 4/240 (2%)
Strand=Plus/Plus
Query 193792 aaaTTTTTATAGGGCCAACTTATTATCATCGTCTTAAACATATGGTTAAGGATAAAATGC 193851
|||| ||| |||| || ||||||||||| ||||||||||| ||||| | || || || |
Sbjct 3091567 AAATCTTTTTAGGACCCACTTATTATCAACGTCTTAAACACATGGTAGATGACAAGATTC 3091626
Query 193852 ATGCTAGAAGTCATGGACAAGTGACTACTTTACATCGACAACCAAATTGTGGTCGTTCTC 193911
| ||||| | ||| | ||| | || | ||||||| | ||||| ||
Sbjct 3091627 ACTCTAGAGCCCGTGGTCCTGTGCAAATCTTGGTTAGACAACCTATGGAAGGTCGAGCTA 3091686
Query 193912 AAGGTGGAGGTTTAAGATTTGGAGAAATGGAGAAAGACTGTATTTTAGTTCATGGTGCTA 193971
|| |||||||||| | || || |||||||| || ||| | | ||| || |||
Sbjct 3091687 GAGATGGAGGTTTACGTTTCGGTGAAATGGAACGTGATTGTCAAATTGCTCACGGAGCTG 3091746
Query 193972 CTCAATTCTTGAATGAAAGAATGTTTTTGTA--TTCTGATCCTTTTCAAGTCGATGTTTG 194029
|||||||||||| |||||| |||| | | ||||||||||| | ||| |||||||
Sbjct 3091747 CTCAATTCTTGAGGGAAAGA--CTTTTCGAAGTTTCTGATCCTTATAGAGTTCATGTTTG 3091804
>seq462
Length=1523190
Score = 82.4 bits (90), Expect = 1e-10
Identities = 137/192 (71%), Gaps = 17/192 (9%)
Strand=Plus/Minus
Query 23055 CATGGGGATGAATATAATTTTGATGGTCCAGGTCAAATTTTAGCTCATGCtttttttCCT 23114
||||| |||| | || ||| ||||||||||| | | ||||||||||| | ||| ||
Sbjct 1352797 CATGGTGATGGAGATCCTTTCGATGGTCCAGGAAATACATTAGCTCATGCATATTTCCC- 1352739
Query 23115 GGTACTGGAAGA-GGAGGAGATGCTCATTTTGATTTAGAAGAAAACTGGAC-ATTATGGG 23172
|| || | ||||| |||||||||||||| |||||| ||||||| ||| |
Sbjct 1352738 ---AC---AATATGGAGGTGATGCTCATTTTGACGATGAAGAATACTGGACCATT----G 1352689
Query 23173 ATGAAGATAGTGGTACTAGTTTATATAGTGTT--AGTTTACACGAATTAGGACATTCTTT 23230
|| ||| ||| || | | ||| | ||| || | || |||||||||||||||||
Sbjct 1352688 ATTCGTATACTGGAACCAATCTATTTCAAGTTGCAGCT--CATGAATTAGGACATTCTTT 1352631
Query 23231 AGGTTTAAGTCA 23242
||| ||| ||||
Sbjct 1352630 AGGCTTAGGTCA 1352619
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 635172510639480
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |