Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tetranychus_20urticae_20[refseq_20GCF_5F000239435.1_202011-12-20] 641 sequences; 90,828,597 total letters Query= NC_023611.1 Length=198533 Score E Sequences producing significant alignments: (Bits) Value seq443 107 2e-18 seq448 98.7 1e-15 seq462 82.4 1e-10 >seq443 Length=6836010 Score = 107 bits (118), Expect = 2e-18 Identities = 158/224 (71%), Gaps = 0/224 (0%) Strand=Plus/Minus Query 168528 GAACTTTTATGGGTTATAAAAGGTTCAACTGATTCAAAACAATTAAATGATATAGGTGTT 168587 |||||| | ||| | || ||||| ||| | ||| ||| | || | ||| ||| Sbjct 506151 GAACTTCTGTGGTTCATTAAAGGGGAAACAAACAGCAAAATATTGCAAGAAAAAGGAGTT 506092 Query 168588 AAAGTTTGGAACGATAATGGTTCTCGTGAATTTTTAGATTTATGTGGTTTTACCGAAAGA 168647 | ||||| | | |||||| || ||||||||||||| |||||| | || ||| Sbjct 506091 CATATTTGGGATGCTAATGGATCGAAAGAATTTTTAGATTCTGTTGGTTTCTCAGATAGA 506032 Query 168648 AAAGAAGGTGATTTAGGTCCAATTTATGGATTTCAATGGAGACATGCAGGAGCTCAATAT 168707 ||||||| ||||||||||| |||||||| ||||||||| ||||| || || ||||| Sbjct 506031 GAAGAAGGAGATTTAGGTCCTATTTATGGGTTTCAATGGCGACATTGGGGTGCCAAATAT 505972 Query 168708 ATTGACTGTGATACAGATTACACCGGACAAGGAGTAGACCAATT 168751 ||||| ||||| |||| | || ||||| | ||||| || Sbjct 505971 ATTGATGCAAATACAAATTATTCTGGTCAAGGTATTGACCAGTT 505928 >seq448 Length=3678511 Score = 98.7 bits (108), Expect = 1e-15 Identities = 167/240 (70%), Gaps = 4/240 (2%) Strand=Plus/Plus Query 193792 aaaTTTTTATAGGGCCAACTTATTATCATCGTCTTAAACATATGGTTAAGGATAAAATGC 193851 |||| ||| |||| || ||||||||||| ||||||||||| ||||| | || || || | Sbjct 3091567 AAATCTTTTTAGGACCCACTTATTATCAACGTCTTAAACACATGGTAGATGACAAGATTC 3091626 Query 193852 ATGCTAGAAGTCATGGACAAGTGACTACTTTACATCGACAACCAAATTGTGGTCGTTCTC 193911 | ||||| | ||| | ||| | || | ||||||| | ||||| || Sbjct 3091627 ACTCTAGAGCCCGTGGTCCTGTGCAAATCTTGGTTAGACAACCTATGGAAGGTCGAGCTA 3091686 Query 193912 AAGGTGGAGGTTTAAGATTTGGAGAAATGGAGAAAGACTGTATTTTAGTTCATGGTGCTA 193971 || |||||||||| | || || |||||||| || ||| | | ||| || ||| Sbjct 3091687 GAGATGGAGGTTTACGTTTCGGTGAAATGGAACGTGATTGTCAAATTGCTCACGGAGCTG 3091746 Query 193972 CTCAATTCTTGAATGAAAGAATGTTTTTGTA--TTCTGATCCTTTTCAAGTCGATGTTTG 194029 |||||||||||| |||||| |||| | | ||||||||||| | ||| ||||||| Sbjct 3091747 CTCAATTCTTGAGGGAAAGA--CTTTTCGAAGTTTCTGATCCTTATAGAGTTCATGTTTG 3091804 >seq462 Length=1523190 Score = 82.4 bits (90), Expect = 1e-10 Identities = 137/192 (71%), Gaps = 17/192 (9%) Strand=Plus/Minus Query 23055 CATGGGGATGAATATAATTTTGATGGTCCAGGTCAAATTTTAGCTCATGCtttttttCCT 23114 ||||| |||| | || ||| ||||||||||| | | ||||||||||| | ||| || Sbjct 1352797 CATGGTGATGGAGATCCTTTCGATGGTCCAGGAAATACATTAGCTCATGCATATTTCCC- 1352739 Query 23115 GGTACTGGAAGA-GGAGGAGATGCTCATTTTGATTTAGAAGAAAACTGGAC-ATTATGGG 23172 || || | ||||| |||||||||||||| |||||| ||||||| ||| | Sbjct 1352738 ---AC---AATATGGAGGTGATGCTCATTTTGACGATGAAGAATACTGGACCATT----G 1352689 Query 23173 ATGAAGATAGTGGTACTAGTTTATATAGTGTT--AGTTTACACGAATTAGGACATTCTTT 23230 || ||| ||| || | | ||| | ||| || | || ||||||||||||||||| Sbjct 1352688 ATTCGTATACTGGAACCAATCTATTTCAAGTTGCAGCT--CATGAATTAGGACATTCTTT 1352631 Query 23231 AGGTTTAAGTCA 23242 ||| ||| |||| Sbjct 1352630 AGGCTTAGGTCA 1352619 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 635172510639480