Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tetranychus_20urticae_20[refseq_20GCF_5F000239435.1_202011-12-20] 641 sequences; 90,828,597 total letters Query= NC_023613.1 Length=204815 Score E Sequences producing significant alignments: (Bits) Value seq443 100 4e-16 seq444 96.9 5e-15 >seq443 Length=6836010 Score = 100 bits (110), Expect = 4e-16 Identities = 139/192 (72%), Gaps = 2/192 (1%) Strand=Plus/Minus Query 180494 TGGAATGATAATGGTTCGCGTAAGTTTTTAGATTCTTGTGGATT-TCATTTTCGAAAAGA 180552 ||| ||| |||||| ||| | |||||||||||| ||| || ||| | || |||| Sbjct 506085 TGGGATGCTAATGGATCGAAAGAATTTTTAGATTCTGTTGGTTTCTCA-GATAGAGAAGA 506027 Query 180553 AGGTGATTTAGGACCAATTTATGGATTTCAATGGAGACATGCAGGAGCTCAATATATTGA 180612 ||| |||||||| || |||||||| ||||||||| ||||| || || |||||||||| Sbjct 506026 AGGAGATTTAGGTCCTATTTATGGGTTTCAATGGCGACATTGGGGTGCCAAATATATTGA 505967 Query 180613 CTGTGATACCAACTATATCGGGCAAGGTATAGACCAATTAAGCCAAGTTATAGAAACTAT 180672 |||| || ||| || |||||||| ||||| || | | ||||| |||| || Sbjct 505966 TGCAAATACAAATTATTCTGGTCAAGGTATTGACCAGTTGAAAAATGTTATTGAAAAAAT 505907 Query 180673 AAAAAATAATCC 180684 ||| ||||| Sbjct 505906 CAAATCGAATCC 505895 >seq444 Length=5217058 Score = 96.9 bits (106), Expect = 5e-15 Identities = 123/166 (74%), Gaps = 14/166 (8%) Strand=Plus/Plus Query 120197 TTATGGTAGAATTGCTTCAAGATCTGGTTTATCATTTAAACATGGGATTGAAGTAGGAGC 120256 |||||||||||||||| || ||||||| ||| | |||||||| |||||| || ||||| Sbjct 5155644 TTATGGTAGAATTGCTCCACGATCTGGATTAGCTCTTAAACATTCGATTGATGTTGGAGC 5155703 Query 120257 GGGTGTTATTGATGAAGATTATCCCAATGAGTTAATG-----ATTATTTTGCACAACCAT 120311 ||||||||||| | ||||| || ||| ||||| |||| ||| ||| | Sbjct 5155704 AGGTGTTATTGACGCTGATTA---CA--GAGGTAATGTTGGAGTTATCTTGTTCAA--TT 5155756 Query 120312 TC--AGACACCGATTTCAAAGTTGAAGTAGGGGATAGAATTGCCCA 120355 || ||| | |||||| ||||| || ||| ||||||||||| || Sbjct 5155757 TCGGAGATTCAGATTTCCAAGTTAAAAAAGGAGATAGAATTGCTCA 5155802 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 655274749569000