Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Tetranychus_20urticae_20[refseq_20GCF_5F000239435.1_202011-12-20]
641 sequences; 90,828,597 total letters
Query= NC_023613.1
Length=204815
Score E
Sequences producing significant alignments: (Bits) Value
seq443 100 4e-16
seq444 96.9 5e-15
>seq443
Length=6836010
Score = 100 bits (110), Expect = 4e-16
Identities = 139/192 (72%), Gaps = 2/192 (1%)
Strand=Plus/Minus
Query 180494 TGGAATGATAATGGTTCGCGTAAGTTTTTAGATTCTTGTGGATT-TCATTTTCGAAAAGA 180552
||| ||| |||||| ||| | |||||||||||| ||| || ||| | || ||||
Sbjct 506085 TGGGATGCTAATGGATCGAAAGAATTTTTAGATTCTGTTGGTTTCTCA-GATAGAGAAGA 506027
Query 180553 AGGTGATTTAGGACCAATTTATGGATTTCAATGGAGACATGCAGGAGCTCAATATATTGA 180612
||| |||||||| || |||||||| ||||||||| ||||| || || ||||||||||
Sbjct 506026 AGGAGATTTAGGTCCTATTTATGGGTTTCAATGGCGACATTGGGGTGCCAAATATATTGA 505967
Query 180613 CTGTGATACCAACTATATCGGGCAAGGTATAGACCAATTAAGCCAAGTTATAGAAACTAT 180672
|||| || ||| || |||||||| ||||| || | | ||||| |||| ||
Sbjct 505966 TGCAAATACAAATTATTCTGGTCAAGGTATTGACCAGTTGAAAAATGTTATTGAAAAAAT 505907
Query 180673 AAAAAATAATCC 180684
||| |||||
Sbjct 505906 CAAATCGAATCC 505895
>seq444
Length=5217058
Score = 96.9 bits (106), Expect = 5e-15
Identities = 123/166 (74%), Gaps = 14/166 (8%)
Strand=Plus/Plus
Query 120197 TTATGGTAGAATTGCTTCAAGATCTGGTTTATCATTTAAACATGGGATTGAAGTAGGAGC 120256
|||||||||||||||| || ||||||| ||| | |||||||| |||||| || |||||
Sbjct 5155644 TTATGGTAGAATTGCTCCACGATCTGGATTAGCTCTTAAACATTCGATTGATGTTGGAGC 5155703
Query 120257 GGGTGTTATTGATGAAGATTATCCCAATGAGTTAATG-----ATTATTTTGCACAACCAT 120311
||||||||||| | ||||| || ||| ||||| |||| ||| ||| |
Sbjct 5155704 AGGTGTTATTGACGCTGATTA---CA--GAGGTAATGTTGGAGTTATCTTGTTCAA--TT 5155756
Query 120312 TC--AGACACCGATTTCAAAGTTGAAGTAGGGGATAGAATTGCCCA 120355
|| ||| | |||||| ||||| || ||| ||||||||||| ||
Sbjct 5155757 TCGGAGATTCAGATTTCCAAGTTAAAAAAGGAGATAGAATTGCTCA 5155802
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 655274749569000
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |