Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Tetranychus_20urticae_20[refseq_20GCF_5F000239435.1_202011-12-20]
641 sequences; 90,828,597 total letters
Query= NC_023615.1
Length=196456
Score E
Sequences producing significant alignments: (Bits) Value
seq443 105 8e-18
seq448 95.1 2e-14
seq462 82.4 1e-10
>seq443
Length=6836010
Score = 105 bits (116), Expect = 8e-18
Identities = 160/225 (71%), Gaps = 2/225 (1%)
Strand=Plus/Minus
Query 171613 GAACTTTTATGGGTTATTAAAGGTTCAACTGATTCAAAACAATTAAATGATATAGGTGTT 171672
|||||| | ||| | |||||||| ||| | ||| ||| | || | ||| |||
Sbjct 506151 GAACTTCTGTGGTTCATTAAAGGGGAAACAAACAGCAAAATATTGCAAGAAAAAGGAGTT 506092
Query 171673 AAAGTTTGGAATGATAATGGTTCTCGTGAATTTTTAGATTTATGCGGGTTTA-CTGAAAG 171731
| ||||| ||| |||||| || ||||||||||||| || ||||| | || ||
Sbjct 506091 CATATTTGGGATGCTAATGGATCGAAAGAATTTTTAGATTC-TGTTGGTTTCTCAGATAG 506033
Query 171732 AAAAGAAGGTGATTTAGGTCCAATTTATGGATTTCAATGGAGACATGCAGGGGCTCAATA 171791
| ||||||| ||||||||||| |||||||| ||||||||| ||||| || || ||||
Sbjct 506032 AGAAGAAGGAGATTTAGGTCCTATTTATGGGTTTCAATGGCGACATTGGGGTGCCAAATA 505973
Query 171792 TATCGACTGTTATACAGATTACACAGGACAAGGAGTGGACCAATT 171836
||| || ||||| |||| | || ||||| | ||||| ||
Sbjct 505972 TATTGATGCAAATACAAATTATTCTGGTCAAGGTATTGACCAGTT 505928
>seq448
Length=3678511
Score = 95.1 bits (104), Expect = 2e-14
Identities = 166/240 (69%), Gaps = 4/240 (2%)
Strand=Plus/Plus
Query 193345 AAATTTTTATAGGGCCAACTTATTACCATCGTCTTAAACACATGGTTAAGGATAAAATGC 193404
|||| ||| |||| || |||||||| || ||||||||||||||||| | || || || |
Sbjct 3091567 AAATCTTTTTAGGACCCACTTATTATCAACGTCTTAAACACATGGTAGATGACAAGATTC 3091626
Query 193405 ATGCTAGAAGTCATGGGCAAGTGACTACTTTACATCGACAACCAAATTGTGGTCGTTCTC 193464
| ||||| | ||| | ||| | || | ||||||| | ||||| ||
Sbjct 3091627 ACTCTAGAGCCCGTGGTCCTGTGCAAATCTTGGTTAGACAACCTATGGAAGGTCGAGCTA 3091686
Query 193465 AAGGTGGAGGTTTAAGATTTGGAGAAATGGAAAAAGACTGTATTTTAGTCCATGGTGCTA 193524
|| |||||||||| | || || ||||||||| || ||| | | || || |||
Sbjct 3091687 GAGATGGAGGTTTACGTTTCGGTGAAATGGAACGTGATTGTCAAATTGCTCACGGAGCTG 3091746
Query 193525 CTCAATTCTTAAATGAAAGAATGTTTTTGTA--TTCTGATCCTTTTCAAGTCGATGTTTG 193582
|||||||||| | |||||| |||| | | ||||||||||| | ||| |||||||
Sbjct 3091747 CTCAATTCTTGAGGGAAAGA--CTTTTCGAAGTTTCTGATCCTTATAGAGTTCATGTTTG 3091804
>seq462
Length=1523190
Score = 82.4 bits (90), Expect = 1e-10
Identities = 78/100 (78%), Gaps = 0/100 (0%)
Strand=Plus/Plus
Query 115124 AACTTCCACCTAATACTTATGGACGAATTGCTTCAAGATCTGGTTTAAGTTTTAAAAATG 115183
|||| || || || || |||||||||||||| || ||||||||| | | | | ||| |
Sbjct 822258 AACTGCCTCCAAACACCTATGGACGAATTGCCTCGAGATCTGGTCTGACTATGAAACACT 822317
Query 115184 GTATTGAAGTAGGAGCAGGTGTTGTCGATGAAGATTATCG 115223
| || | || |||||||| ||| ||||||||||||||||
Sbjct 822318 CTCTTCATGTCGGAGCAGGGGTTATCGATGAAGATTATCG 822357
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 628526163893760
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |