Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tetranychus_20urticae_20[refseq_20GCF_5F000239435.1_202011-12-20] 641 sequences; 90,828,597 total letters Query= NC_023615.1 Length=196456 Score E Sequences producing significant alignments: (Bits) Value seq443 105 8e-18 seq448 95.1 2e-14 seq462 82.4 1e-10 >seq443 Length=6836010 Score = 105 bits (116), Expect = 8e-18 Identities = 160/225 (71%), Gaps = 2/225 (1%) Strand=Plus/Minus Query 171613 GAACTTTTATGGGTTATTAAAGGTTCAACTGATTCAAAACAATTAAATGATATAGGTGTT 171672 |||||| | ||| | |||||||| ||| | ||| ||| | || | ||| ||| Sbjct 506151 GAACTTCTGTGGTTCATTAAAGGGGAAACAAACAGCAAAATATTGCAAGAAAAAGGAGTT 506092 Query 171673 AAAGTTTGGAATGATAATGGTTCTCGTGAATTTTTAGATTTATGCGGGTTTA-CTGAAAG 171731 | ||||| ||| |||||| || ||||||||||||| || ||||| | || || Sbjct 506091 CATATTTGGGATGCTAATGGATCGAAAGAATTTTTAGATTC-TGTTGGTTTCTCAGATAG 506033 Query 171732 AAAAGAAGGTGATTTAGGTCCAATTTATGGATTTCAATGGAGACATGCAGGGGCTCAATA 171791 | ||||||| ||||||||||| |||||||| ||||||||| ||||| || || |||| Sbjct 506032 AGAAGAAGGAGATTTAGGTCCTATTTATGGGTTTCAATGGCGACATTGGGGTGCCAAATA 505973 Query 171792 TATCGACTGTTATACAGATTACACAGGACAAGGAGTGGACCAATT 171836 ||| || ||||| |||| | || ||||| | ||||| || Sbjct 505972 TATTGATGCAAATACAAATTATTCTGGTCAAGGTATTGACCAGTT 505928 >seq448 Length=3678511 Score = 95.1 bits (104), Expect = 2e-14 Identities = 166/240 (69%), Gaps = 4/240 (2%) Strand=Plus/Plus Query 193345 AAATTTTTATAGGGCCAACTTATTACCATCGTCTTAAACACATGGTTAAGGATAAAATGC 193404 |||| ||| |||| || |||||||| || ||||||||||||||||| | || || || | Sbjct 3091567 AAATCTTTTTAGGACCCACTTATTATCAACGTCTTAAACACATGGTAGATGACAAGATTC 3091626 Query 193405 ATGCTAGAAGTCATGGGCAAGTGACTACTTTACATCGACAACCAAATTGTGGTCGTTCTC 193464 | ||||| | ||| | ||| | || | ||||||| | ||||| || Sbjct 3091627 ACTCTAGAGCCCGTGGTCCTGTGCAAATCTTGGTTAGACAACCTATGGAAGGTCGAGCTA 3091686 Query 193465 AAGGTGGAGGTTTAAGATTTGGAGAAATGGAAAAAGACTGTATTTTAGTCCATGGTGCTA 193524 || |||||||||| | || || ||||||||| || ||| | | || || ||| Sbjct 3091687 GAGATGGAGGTTTACGTTTCGGTGAAATGGAACGTGATTGTCAAATTGCTCACGGAGCTG 3091746 Query 193525 CTCAATTCTTAAATGAAAGAATGTTTTTGTA--TTCTGATCCTTTTCAAGTCGATGTTTG 193582 |||||||||| | |||||| |||| | | ||||||||||| | ||| ||||||| Sbjct 3091747 CTCAATTCTTGAGGGAAAGA--CTTTTCGAAGTTTCTGATCCTTATAGAGTTCATGTTTG 3091804 >seq462 Length=1523190 Score = 82.4 bits (90), Expect = 1e-10 Identities = 78/100 (78%), Gaps = 0/100 (0%) Strand=Plus/Plus Query 115124 AACTTCCACCTAATACTTATGGACGAATTGCTTCAAGATCTGGTTTAAGTTTTAAAAATG 115183 |||| || || || || |||||||||||||| || ||||||||| | | | | ||| | Sbjct 822258 AACTGCCTCCAAACACCTATGGACGAATTGCCTCGAGATCTGGTCTGACTATGAAACACT 822317 Query 115184 GTATTGAAGTAGGAGCAGGTGTTGTCGATGAAGATTATCG 115223 | || | || |||||||| ||| |||||||||||||||| Sbjct 822318 CTCTTCATGTCGGAGCAGGGGTTATCGATGAAGATTATCG 822357 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 628526163893760