Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tetranychus_20urticae_20[refseq_20GCF_5F000239435.1_202011-12-20] 641 sequences; 90,828,597 total letters Query= NC_024446.1 Length=306862 Score E Sequences producing significant alignments: (Bits) Value seq476 163 6e-35 seq453 154 3e-32 seq444 150 4e-31 seq448 118 2e-21 seq451 95.1 2e-14 >seq476 Length=723144 Score = 163 bits (180), Expect = 6e-35 Identities = 217/299 (73%), Gaps = 2/299 (1%) Strand=Plus/Minus Query 198325 AAACACATGACCCTCTATGGAATGCATCGCAAATACAGATGATAAGAGAAGGAAAAATGC 198384 |||| ||||| ||||| |||||||| | || || || || | | || | ||| | | Sbjct 1825 AAACGCATGATCCTCTGTGGAATGCTTGTCAGATGCAATTGGTTCGCGATGCTAAACTTC 1766 Query 198385 ATAGTTTTTTAAGAATGTACTGGGCTAAAAAGATACTTGAATGGACAAGAACACCGGAAG 198444 || ||| | |||||||| ||||||||||||||||||||||||| | | | || |||| Sbjct 1765 ATGGTTACATGAGAATGTATTGGGCTAAAAAGATACTTGAATGGAGTAAATCTCCCGAAG 1706 Query 198445 ACGCTTTGAGTTATAG-TATCTATCTAAACAATAAGTACGAACTAGACGGCACGGATCCT 198503 | || || | || | ||||||| |||| | || | ||||||||| || ||||| Sbjct 1705 AAGCACTG-GAAATCGCTATCTATTTAAATGACAATTTCGAACTAGATGGTCGTGATCCA 1647 Query 198504 AACGGATACGTAGGTTGTATGTGGTCTATTTGCGGATTACATGATCGAGCGTGGAAAGAA 198563 || || | |||||| ||| | ||||| || | || ||||||| | || ||| ||| Sbjct 1646 AATGGTTTCGTAGGCTGTCTCTGGTCCGTTGGGGGTATACATGACCAAGGATGGGGTGAA 1587 Query 198564 AGACCTATATTTGGGAAGATAAGATATATGAATTATGAGGGTTCTAAGAAAAAATTTGA 198622 ||| | || ||||| || ||| |||| ||||||||||| |||| || | ||||||||| Sbjct 1586 AGAGCGATCTTTGGAAAAATACGATACATGAATTATGAAGGTTGCAAAAGAAAATTTGA 1528 >seq453 Length=2394413 Score = 154 bits (170), Expect = 3e-32 Identities = 215/299 (72%), Gaps = 2/299 (1%) Strand=Plus/Minus Query 198325 AAACACATGACCCTCTATGGAATGCATCGCAAATACAGATGATAAGAGAAGGAAAAATGC 198384 |||| ||||| ||||| |||||||| | || || || || | | || | ||| | | Sbjct 2274851 AAACTCATGATCCTCTGTGGAATGCTTGTCAGATGCAATTGGTTCGCGATGCTAAACTTC 2274792 Query 198385 ATAGTTTTTTAAGAATGTACTGGGCTAAAAAGATACTTGAATGGACAAGAACACCGGAAG 198444 || ||| | |||||||| ||||||||||||||||| ||||||| | | | ||||||| Sbjct 2274791 ATGGTTACATGAGAATGTATTGGGCTAAAAAGATACTAGAATGGAGTAAATCTCCGGAAG 2274732 Query 198445 ACGCTTTGAGTTATAG-TATCTATCTAAACAATAAGTACGAACTAGACGGCACGGATCCT 198503 | || || | || | ||||||| |||| | || | ||| |||| || ||||| Sbjct 2274731 AAGCACTG-GAAATCGCTATCTATTTAAATGACAAATTTGAATTAGATGGTCGCGATCCA 2274673 Query 198504 AACGGATACGTAGGTTGTATGTGGTCTATTTGCGGATTACATGATCGAGCGTGGAAAGAA 198563 || || | |||||| ||| | ||||| || | || ||||||| | || ||| ||| Sbjct 2274672 AATGGTTTCGTAGGCTGTCTCTGGTCCGTTGGGGGTATACATGACCAAGGATGGGGTGAA 2274613 Query 198564 AGACCTATATTTGGGAAGATAAGATATATGAATTATGAGGGTTCTAAGAAAAAATTTGA 198622 ||| | || ||||| || ||| |||| ||||||||||| |||| || | ||||||||| Sbjct 2274612 AGAGCGATCTTTGGAAAAATACGATACATGAATTATGAAGGTTGCAAAAGAAAATTTGA 2274554 >seq444 Length=5217058 Score = 150 bits (166), Expect = 4e-31 Identities = 163/216 (75%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 82596 CGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCG 82655 |||| || ||||| || ||||||||||| || |||||||||||| ||| | | |||| Sbjct 3541813 CGCAAGACCAAGTGAAGGGTAGATTCTTTTTGAATATTATAATCACTGAGAGTACGACCG 3541872 Query 82656 TCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTA 82715 || || || ||||| ||||| ||||| | | |||||| || || || || ||||| || Sbjct 3541873 TCCTCGAGCTGTTTACCAGCGAAGATCAAACGTTGTTGGTCAGGTGGGATACCTTCTTTG 3541932 Query 82716 TCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATC 82775 ||||| || || ||||| || |||||||| |||||| |||||| || || | || || Sbjct 3541933 TCTTGGATTTTGGCTTTCACGTTTTCAATAGTATCAGAAGGTTCAACCTCAAGTGTAATG 3541992 Query 82776 GTCTTGCCTGTCAACGTCTTTACAAATATCTGCATT 82811 ||||| || || | || ||||| || || |||||| Sbjct 3541993 GTCTTACCAGTAAGAGTTTTTACGAAAATTTGCATT 3542028 Score = 147 bits (162), Expect = 4e-30 Identities = 158/209 (76%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 82602 ACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCGTCTTCT 82661 ||||| || | ||| ||||||||||| || || || ||||| || ||| ||| || || Sbjct 3541591 ACTAAATGTAAAGTTGATTCTTTCTGAATGTTGTAGTCAGAAAGGGTTCGACCATCCTCA 3541650 Query 82662 AGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGA 82721 || ||||| ||||| ||||| || | |||||||| || || ||||||||||| ||||| Sbjct 3541651 AGCTGTTTACCAGCGAAGATGAGACGCTGTTGATCAGGTGGGATTCCTTCCTTGTCTTGG 3541710 Query 82722 ATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTG 82781 || || || || ||||||||||| || || |||||| |||||||| || || || || Sbjct 3541711 ATTTTAGCCTTGACATTTTCAATGGTGTCGGAAGGTTCAACTTCCAAGGTGATGGTTTTA 3541770 Query 82782 CCTGTCAACGTCTTTACAAATATCTGCAT 82810 || || | || || || || || ||||| Sbjct 3541771 CCAGTGAGGGTTTTGACGAAAATTTGCAT 3541799 Score = 136 bits (150), Expect = 8e-27 Identities = 144/190 (76%), Gaps = 0/190 (0%) Strand=Plus/Plus Query 82621 CTTTCTGTATATTATAATCAGATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGA 82680 |||| || |||||||||||||||| | | || ||||| |||||||||||||| |||| Sbjct 3542186 CTTTTTGGATATTATAATCAGATAATGTACGTCCATCTTCGAGTTGTTTTCCAGCGAAGA 3542245 Query 82681 TTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTT 82740 | | | |||||| || || || || |||||||| || || || || || || || |||| Sbjct 3542246 TCAAACGTTGTTGGTCGGGGGGAATACCTTCCTTGTCCTGGATTTTAGCCTTGACGTTTT 3542305 Query 82741 CAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAA 82800 |||| ||||| |||||| ||||||||||| || || || || || | || || || | Sbjct 3542306 CAATGGTATCGGAAGGTTCAACTTCCAAAGTAATGGTTTTTCCAGTGAGGGTTTTAACGA 3542365 Query 82801 ATATCTGCAT 82810 | || ||||| Sbjct 3542366 AAATTTGCAT 3542375 Score = 116 bits (128), Expect = 7e-21 Identities = 153/212 (72%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 82602 ACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCGTCTTCT 82661 || ||||| || ||||| ||||| || || || ||||| || | | || ||||| Sbjct 3542395 ACCAAGTGAAGGGTAGACTCTTTTTGAATGTTGTAATCGCTCAGGGTACGTCCATCTTCA 3542454 Query 82662 AGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGA 82721 || ||||| ||||| ||||| | | |||||||| || || || |||||||| ||||| Sbjct 3542455 AGCTGTTTACCAGCGAAGATCAAACGCTGTTGATCGGGTGGGATACCTTCCTTGTCTTGG 3542514 Query 82722 ATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTG 82781 ||||| ||||| ||||||||||| || || ||||| || || | || || || || Sbjct 3542515 ATCTTGGCTTTAACATTTTCAATAGTGTCCGATGGTTCAACCTCAAGGGTGATGGTTTTT 3542574 Query 82782 CCTGTCAACGTCTTTACAAATATCTGCATTAT 82813 || || | ||||| || || || ||||| || Sbjct 3542575 CCAGTAAGAGTCTTGACGAAAATTTGCATGAT 3542606 >seq448 Length=3678511 Score = 118 bits (130), Expect = 2e-21 Identities = 170/237 (72%), Gaps = 2/237 (1%) Strand=Plus/Minus Query 143940 ATTTATACAGATAAAGATGAGTGGACTACTTGGaaaaaaaTACCCGATCCAGTCTTGCAT 143999 |||| || ||| | | || ||| | |||||||| |||| ||||||| || ||||| Sbjct 3039004 ATTTTCACTGATGATCAAGAATGGTCCTCTTGGAAACAAATGTCCGATCCTGTTTTGCAC 3038945 Query 144000 ATAGAACTTAGGAGATGGGCTGATGTTTTTATTATAGCGCCCTTAACAGCAAATACGTTA 144059 || ||||| | | |||||||||| || | | || | || || || ||||| ||| Sbjct 3038944 ATTGAACTCCGTAAATGGGCTGATATTATGTTGATTTCTCCATTGGATGCTAATACTTTA 3038885 Query 144060 GCAAAAATAGCCAATGGTATATGCGATAATTTACTAACATCTATAGTAAGAGCCTGGGAT 144119 || ||||| | |||||| || ||||| ||| |||| | ||||| | ||||||||| Sbjct 3038884 GCCAAAATCTCTTCTGGTATTTGTGATAACTTATTAACTTGTATAGCCCGTGCCTGGGAT 3038825 Query 144120 ATAAATAAACCTCTTATT-TTTTGCCCCGCTATGAATACCCTTATGTGGGAACATCC 144175 | | || ||| ||||| ||||| || ||||||| || | |||||||||||||| Sbjct 3038824 CTGCAAAAGCCT-TTATTATTTTGTCCATCTATGAACACATTCATGTGGGAACATCC 3038769 >seq451 Length=2993488 Score = 95.1 bits (104), Expect = 2e-14 Identities = 144/205 (70%), Gaps = 0/205 (0%) Strand=Plus/Minus Query 50698 TCTGGATATGCTATTTTTTCGAATATGATTTGAGCTATTCTATCACCCTTGGATACATTA 50757 ||||||||||| ||| ||||| | || | |||||| ||||| || || ||| ||| | | Sbjct 1199949 TCTGGATATGCGATTCTTTCGCAGATAAGTTGAGCGATTCTGTCTCCTTTGTTTACTTGA 1199890 Query 50758 AATTGTGTAGAACCGAAATTAAATAATAGAACACTTACGTTACCTCTATAGTCTGAGTCA 50817 || | | || ||||| ||||| | ||| | || || |||| ||| |||| ||| Sbjct 1199889 AACTCTTCGTCTCCAAAATTGAATAAGATAACTCCAACATTTCCTCGATAATCTGCGTCG 1199830 Query 50818 ATTACACCAGCACCTACGTCTATAAAATAATTATAAGCAAGCCCTGATCTAGGAGCTATT 50877 | |||||||| ||||| || ||| ||| || ||| | || |||| || || ||| Sbjct 1199829 ACAACACCAGCTCCTACATCGATAGAATGTTTGAGAGCTAATCCGGATCGTGGCGCGATT 1199770 Query 50878 CTACCGTAGTATCCATTAGGTATTT 50902 || ||||| | ||| ||| |||| Sbjct 1199769 CTTCCGTAACAGCCAGCAGGAATTT 1199745 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 981819136437299