Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Tetranychus_20urticae_20[refseq_20GCF_5F000239435.1_202011-12-20]
641 sequences; 90,828,597 total letters
Query= NC_024446.1
Length=306862
Score E
Sequences producing significant alignments: (Bits) Value
seq476 163 6e-35
seq453 154 3e-32
seq444 150 4e-31
seq448 118 2e-21
seq451 95.1 2e-14
>seq476
Length=723144
Score = 163 bits (180), Expect = 6e-35
Identities = 217/299 (73%), Gaps = 2/299 (1%)
Strand=Plus/Minus
Query 198325 AAACACATGACCCTCTATGGAATGCATCGCAAATACAGATGATAAGAGAAGGAAAAATGC 198384
|||| ||||| ||||| |||||||| | || || || || | | || | ||| | |
Sbjct 1825 AAACGCATGATCCTCTGTGGAATGCTTGTCAGATGCAATTGGTTCGCGATGCTAAACTTC 1766
Query 198385 ATAGTTTTTTAAGAATGTACTGGGCTAAAAAGATACTTGAATGGACAAGAACACCGGAAG 198444
|| ||| | |||||||| ||||||||||||||||||||||||| | | | || ||||
Sbjct 1765 ATGGTTACATGAGAATGTATTGGGCTAAAAAGATACTTGAATGGAGTAAATCTCCCGAAG 1706
Query 198445 ACGCTTTGAGTTATAG-TATCTATCTAAACAATAAGTACGAACTAGACGGCACGGATCCT 198503
| || || | || | ||||||| |||| | || | ||||||||| || |||||
Sbjct 1705 AAGCACTG-GAAATCGCTATCTATTTAAATGACAATTTCGAACTAGATGGTCGTGATCCA 1647
Query 198504 AACGGATACGTAGGTTGTATGTGGTCTATTTGCGGATTACATGATCGAGCGTGGAAAGAA 198563
|| || | |||||| ||| | ||||| || | || ||||||| | || ||| |||
Sbjct 1646 AATGGTTTCGTAGGCTGTCTCTGGTCCGTTGGGGGTATACATGACCAAGGATGGGGTGAA 1587
Query 198564 AGACCTATATTTGGGAAGATAAGATATATGAATTATGAGGGTTCTAAGAAAAAATTTGA 198622
||| | || ||||| || ||| |||| ||||||||||| |||| || | |||||||||
Sbjct 1586 AGAGCGATCTTTGGAAAAATACGATACATGAATTATGAAGGTTGCAAAAGAAAATTTGA 1528
>seq453
Length=2394413
Score = 154 bits (170), Expect = 3e-32
Identities = 215/299 (72%), Gaps = 2/299 (1%)
Strand=Plus/Minus
Query 198325 AAACACATGACCCTCTATGGAATGCATCGCAAATACAGATGATAAGAGAAGGAAAAATGC 198384
|||| ||||| ||||| |||||||| | || || || || | | || | ||| | |
Sbjct 2274851 AAACTCATGATCCTCTGTGGAATGCTTGTCAGATGCAATTGGTTCGCGATGCTAAACTTC 2274792
Query 198385 ATAGTTTTTTAAGAATGTACTGGGCTAAAAAGATACTTGAATGGACAAGAACACCGGAAG 198444
|| ||| | |||||||| ||||||||||||||||| ||||||| | | | |||||||
Sbjct 2274791 ATGGTTACATGAGAATGTATTGGGCTAAAAAGATACTAGAATGGAGTAAATCTCCGGAAG 2274732
Query 198445 ACGCTTTGAGTTATAG-TATCTATCTAAACAATAAGTACGAACTAGACGGCACGGATCCT 198503
| || || | || | ||||||| |||| | || | ||| |||| || |||||
Sbjct 2274731 AAGCACTG-GAAATCGCTATCTATTTAAATGACAAATTTGAATTAGATGGTCGCGATCCA 2274673
Query 198504 AACGGATACGTAGGTTGTATGTGGTCTATTTGCGGATTACATGATCGAGCGTGGAAAGAA 198563
|| || | |||||| ||| | ||||| || | || ||||||| | || ||| |||
Sbjct 2274672 AATGGTTTCGTAGGCTGTCTCTGGTCCGTTGGGGGTATACATGACCAAGGATGGGGTGAA 2274613
Query 198564 AGACCTATATTTGGGAAGATAAGATATATGAATTATGAGGGTTCTAAGAAAAAATTTGA 198622
||| | || ||||| || ||| |||| ||||||||||| |||| || | |||||||||
Sbjct 2274612 AGAGCGATCTTTGGAAAAATACGATACATGAATTATGAAGGTTGCAAAAGAAAATTTGA 2274554
>seq444
Length=5217058
Score = 150 bits (166), Expect = 4e-31
Identities = 163/216 (75%), Gaps = 0/216 (0%)
Strand=Plus/Plus
Query 82596 CGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCG 82655
|||| || ||||| || ||||||||||| || |||||||||||| ||| | | ||||
Sbjct 3541813 CGCAAGACCAAGTGAAGGGTAGATTCTTTTTGAATATTATAATCACTGAGAGTACGACCG 3541872
Query 82656 TCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTA 82715
|| || || ||||| ||||| ||||| | | |||||| || || || || ||||| ||
Sbjct 3541873 TCCTCGAGCTGTTTACCAGCGAAGATCAAACGTTGTTGGTCAGGTGGGATACCTTCTTTG 3541932
Query 82716 TCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATC 82775
||||| || || ||||| || |||||||| |||||| |||||| || || | || ||
Sbjct 3541933 TCTTGGATTTTGGCTTTCACGTTTTCAATAGTATCAGAAGGTTCAACCTCAAGTGTAATG 3541992
Query 82776 GTCTTGCCTGTCAACGTCTTTACAAATATCTGCATT 82811
||||| || || | || ||||| || || ||||||
Sbjct 3541993 GTCTTACCAGTAAGAGTTTTTACGAAAATTTGCATT 3542028
Score = 147 bits (162), Expect = 4e-30
Identities = 158/209 (76%), Gaps = 0/209 (0%)
Strand=Plus/Plus
Query 82602 ACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCGTCTTCT 82661
||||| || | ||| ||||||||||| || || || ||||| || ||| ||| || ||
Sbjct 3541591 ACTAAATGTAAAGTTGATTCTTTCTGAATGTTGTAGTCAGAAAGGGTTCGACCATCCTCA 3541650
Query 82662 AGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGA 82721
|| ||||| ||||| ||||| || | |||||||| || || ||||||||||| |||||
Sbjct 3541651 AGCTGTTTACCAGCGAAGATGAGACGCTGTTGATCAGGTGGGATTCCTTCCTTGTCTTGG 3541710
Query 82722 ATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTG 82781
|| || || || ||||||||||| || || |||||| |||||||| || || || ||
Sbjct 3541711 ATTTTAGCCTTGACATTTTCAATGGTGTCGGAAGGTTCAACTTCCAAGGTGATGGTTTTA 3541770
Query 82782 CCTGTCAACGTCTTTACAAATATCTGCAT 82810
|| || | || || || || || |||||
Sbjct 3541771 CCAGTGAGGGTTTTGACGAAAATTTGCAT 3541799
Score = 136 bits (150), Expect = 8e-27
Identities = 144/190 (76%), Gaps = 0/190 (0%)
Strand=Plus/Plus
Query 82621 CTTTCTGTATATTATAATCAGATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGA 82680
|||| || |||||||||||||||| | | || ||||| |||||||||||||| ||||
Sbjct 3542186 CTTTTTGGATATTATAATCAGATAATGTACGTCCATCTTCGAGTTGTTTTCCAGCGAAGA 3542245
Query 82681 TTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTT 82740
| | | |||||| || || || || |||||||| || || || || || || || ||||
Sbjct 3542246 TCAAACGTTGTTGGTCGGGGGGAATACCTTCCTTGTCCTGGATTTTAGCCTTGACGTTTT 3542305
Query 82741 CAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAA 82800
|||| ||||| |||||| ||||||||||| || || || || || | || || || |
Sbjct 3542306 CAATGGTATCGGAAGGTTCAACTTCCAAAGTAATGGTTTTTCCAGTGAGGGTTTTAACGA 3542365
Query 82801 ATATCTGCAT 82810
| || |||||
Sbjct 3542366 AAATTTGCAT 3542375
Score = 116 bits (128), Expect = 7e-21
Identities = 153/212 (72%), Gaps = 0/212 (0%)
Strand=Plus/Plus
Query 82602 ACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCGTCTTCT 82661
|| ||||| || ||||| ||||| || || || ||||| || | | || |||||
Sbjct 3542395 ACCAAGTGAAGGGTAGACTCTTTTTGAATGTTGTAATCGCTCAGGGTACGTCCATCTTCA 3542454
Query 82662 AGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGA 82721
|| ||||| ||||| ||||| | | |||||||| || || || |||||||| |||||
Sbjct 3542455 AGCTGTTTACCAGCGAAGATCAAACGCTGTTGATCGGGTGGGATACCTTCCTTGTCTTGG 3542514
Query 82722 ATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTG 82781
||||| ||||| ||||||||||| || || ||||| || || | || || || ||
Sbjct 3542515 ATCTTGGCTTTAACATTTTCAATAGTGTCCGATGGTTCAACCTCAAGGGTGATGGTTTTT 3542574
Query 82782 CCTGTCAACGTCTTTACAAATATCTGCATTAT 82813
|| || | ||||| || || || ||||| ||
Sbjct 3542575 CCAGTAAGAGTCTTGACGAAAATTTGCATGAT 3542606
>seq448
Length=3678511
Score = 118 bits (130), Expect = 2e-21
Identities = 170/237 (72%), Gaps = 2/237 (1%)
Strand=Plus/Minus
Query 143940 ATTTATACAGATAAAGATGAGTGGACTACTTGGaaaaaaaTACCCGATCCAGTCTTGCAT 143999
|||| || ||| | | || ||| | |||||||| |||| ||||||| || |||||
Sbjct 3039004 ATTTTCACTGATGATCAAGAATGGTCCTCTTGGAAACAAATGTCCGATCCTGTTTTGCAC 3038945
Query 144000 ATAGAACTTAGGAGATGGGCTGATGTTTTTATTATAGCGCCCTTAACAGCAAATACGTTA 144059
|| ||||| | | |||||||||| || | | || | || || || ||||| |||
Sbjct 3038944 ATTGAACTCCGTAAATGGGCTGATATTATGTTGATTTCTCCATTGGATGCTAATACTTTA 3038885
Query 144060 GCAAAAATAGCCAATGGTATATGCGATAATTTACTAACATCTATAGTAAGAGCCTGGGAT 144119
|| ||||| | |||||| || ||||| ||| |||| | ||||| | |||||||||
Sbjct 3038884 GCCAAAATCTCTTCTGGTATTTGTGATAACTTATTAACTTGTATAGCCCGTGCCTGGGAT 3038825
Query 144120 ATAAATAAACCTCTTATT-TTTTGCCCCGCTATGAATACCCTTATGTGGGAACATCC 144175
| | || ||| ||||| ||||| || ||||||| || | ||||||||||||||
Sbjct 3038824 CTGCAAAAGCCT-TTATTATTTTGTCCATCTATGAACACATTCATGTGGGAACATCC 3038769
>seq451
Length=2993488
Score = 95.1 bits (104), Expect = 2e-14
Identities = 144/205 (70%), Gaps = 0/205 (0%)
Strand=Plus/Minus
Query 50698 TCTGGATATGCTATTTTTTCGAATATGATTTGAGCTATTCTATCACCCTTGGATACATTA 50757
||||||||||| ||| ||||| | || | |||||| ||||| || || ||| ||| | |
Sbjct 1199949 TCTGGATATGCGATTCTTTCGCAGATAAGTTGAGCGATTCTGTCTCCTTTGTTTACTTGA 1199890
Query 50758 AATTGTGTAGAACCGAAATTAAATAATAGAACACTTACGTTACCTCTATAGTCTGAGTCA 50817
|| | | || ||||| ||||| | ||| | || || |||| ||| |||| |||
Sbjct 1199889 AACTCTTCGTCTCCAAAATTGAATAAGATAACTCCAACATTTCCTCGATAATCTGCGTCG 1199830
Query 50818 ATTACACCAGCACCTACGTCTATAAAATAATTATAAGCAAGCCCTGATCTAGGAGCTATT 50877
| |||||||| ||||| || ||| ||| || ||| | || |||| || || |||
Sbjct 1199829 ACAACACCAGCTCCTACATCGATAGAATGTTTGAGAGCTAATCCGGATCGTGGCGCGATT 1199770
Query 50878 CTACCGTAGTATCCATTAGGTATTT 50902
|| ||||| | ||| ||| ||||
Sbjct 1199769 CTTCCGTAACAGCCAGCAGGAATTT 1199745
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 981819136437299
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