Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tetranychus_20urticae_20[refseq_20GCF_5F000239435.1_202011-12-20] 641 sequences; 90,828,597 total letters Query= NC_024447.1 Length=282356 Score E Sequences producing significant alignments: (Bits) Value seq476 149 1e-30 seq453 140 6e-28 seq448 109 1e-18 seq451 91.5 3e-13 >seq476 Length=723144 Score = 149 bits (164), Expect = 1e-30 Identities = 214/299 (72%), Gaps = 2/299 (1%) Strand=Plus/Minus Query 183008 AAACACATGACCCTCTATGGAATGCATCACAAATACAGATGATGAGAGAAGGAAAAATGC 183067 |||| ||||| ||||| |||||||| | || || || || | | || | ||| | | Sbjct 1825 AAACGCATGATCCTCTGTGGAATGCTTGTCAGATGCAATTGGTTCGCGATGCTAAACTTC 1766 Query 183068 ATAGTTTTTTACGAATGTACTGGGCTAAAAAGATACTTGAATGGACAAGAACTCCGGAAG 183127 || ||| | ||||||| ||||||||||||||||||||||||| | | |||| |||| Sbjct 1765 ATGGTTACATGAGAATGTATTGGGCTAAAAAGATACTTGAATGGAGTAAATCTCCCGAAG 1706 Query 183128 ATGCTTTGAGTTATAG-TATCTATATGAACAATAAGTACGAACTAGACGGTACGGATCCT 183186 | || || | || | ||||||| | || | || | ||||||||| ||| ||||| Sbjct 1705 AAGCACTG-GAAATCGCTATCTATTTAAATGACAATTTCGAACTAGATGGTCGTGATCCA 1647 Query 183187 AACGGATACGTAGGTTGTATGTGGTCTATTTGCGGATTACACGATAGAGCGTGGAAAGAA 183246 || || | |||||| ||| | ||||| || | || |||| || || ||| ||| Sbjct 1646 AATGGTTTCGTAGGCTGTCTCTGGTCCGTTGGGGGTATACATGACCAAGGATGGGGTGAA 1587 Query 183247 AGACCTATATTTGGAAAGATAAGATATATGAATTATGAGAGTTCTAAGAAGAAATTTGA 183305 ||| | || |||||||| ||| |||| ||||||||||| ||| || | |||||||| Sbjct 1586 AGAGCGATCTTTGGAAAAATACGATACATGAATTATGAAGGTTGCAAAAGAAAATTTGA 1528 >seq453 Length=2394413 Score = 140 bits (154), Expect = 6e-28 Identities = 212/299 (71%), Gaps = 2/299 (1%) Strand=Plus/Minus Query 183008 AAACACATGACCCTCTATGGAATGCATCACAAATACAGATGATGAGAGAAGGAAAAATGC 183067 |||| ||||| ||||| |||||||| | || || || || | | || | ||| | | Sbjct 2274851 AAACTCATGATCCTCTGTGGAATGCTTGTCAGATGCAATTGGTTCGCGATGCTAAACTTC 2274792 Query 183068 ATAGTTTTTTACGAATGTACTGGGCTAAAAAGATACTTGAATGGACAAGAACTCCGGAAG 183127 || ||| | ||||||| ||||||||||||||||| ||||||| | | ||||||||| Sbjct 2274791 ATGGTTACATGAGAATGTATTGGGCTAAAAAGATACTAGAATGGAGTAAATCTCCGGAAG 2274732 Query 183128 ATGCTTTGAGTTATAG-TATCTATATGAACAATAAGTACGAACTAGACGGTACGGATCCT 183186 | || || | || | ||||||| | || | || | ||| |||| ||| ||||| Sbjct 2274731 AAGCACTG-GAAATCGCTATCTATTTAAATGACAAATTTGAATTAGATGGTCGCGATCCA 2274673 Query 183187 AACGGATACGTAGGTTGTATGTGGTCTATTTGCGGATTACACGATAGAGCGTGGAAAGAA 183246 || || | |||||| ||| | ||||| || | || |||| || || ||| ||| Sbjct 2274672 AATGGTTTCGTAGGCTGTCTCTGGTCCGTTGGGGGTATACATGACCAAGGATGGGGTGAA 2274613 Query 183247 AGACCTATATTTGGAAAGATAAGATATATGAATTATGAGAGTTCTAAGAAGAAATTTGA 183305 ||| | || |||||||| ||| |||| ||||||||||| ||| || | |||||||| Sbjct 2274612 AGAGCGATCTTTGGAAAAATACGATACATGAATTATGAAGGTTGCAAAAGAAAATTTGA 2274554 >seq448 Length=3678511 Score = 109 bits (120), Expect = 1e-18 Identities = 168/237 (71%), Gaps = 2/237 (1%) Strand=Plus/Minus Query 142959 ATTTATACAGATAAAGATGAGTGGACTACTTGGaaaaaaaTACCCGATCCCGTCTTGCAT 143018 |||| || ||| | | || ||| | |||||||| |||| ||||||| || ||||| Sbjct 3039004 ATTTTCACTGATGATCAAGAATGGTCCTCTTGGAAACAAATGTCCGATCCTGTTTTGCAC 3038945 Query 143019 ATAGAACTTAGGAGATGGGCGGATGTTTTTCTTATAGCGCCCTTAACGGCAAATACGTTA 143078 || ||||| | | |||||| ||| || | | || | || || || ||||| ||| Sbjct 3038944 ATTGAACTCCGTAAATGGGCTGATATTATGTTGATTTCTCCATTGGATGCTAATACTTTA 3038885 Query 143079 GCAAAAATAGCCAACGGTATATGCGATAATTTACTAACATCTATAGTAAGAGCCTGGGAT 143138 || ||||| | ||||| || ||||| ||| |||| | ||||| | ||||||||| Sbjct 3038884 GCCAAAATCTCTTCTGGTATTTGTGATAACTTATTAACTTGTATAGCCCGTGCCTGGGAT 3038825 Query 143139 ATAAATAAACCTCTTATT-TTTTGTCCCGCTATGAATAGCCTTATGTGGGAACATCC 143194 | | || ||| ||||| |||||||| ||||||| | | |||||||||||||| Sbjct 3038824 CTGCAAAAGCCT-TTATTATTTTGTCCATCTATGAACACATTCATGTGGGAACATCC 3038769 >seq451 Length=2993488 Score = 91.5 bits (100), Expect = 3e-13 Identities = 146/209 (70%), Gaps = 8/209 (4%) Strand=Plus/Minus Query 48987 TCTGGATATGCTATTTTTTCGAATATGATTTGAGCTATTCTATCACCCTTGGATACATTA 49046 ||||||||||| ||| ||||| | || | |||||| ||||| || || ||| ||| | | Sbjct 1199949 TCTGGATATGCGATTCTTTCGCAGATAAGTTGAGCGATTCTGTCTCCTTTGTTTACTTGA 1199890 Query 49047 AA----TGGTATAGAACTGAAATTAAATAATAGAACACCTACGTTACCTCTATAGTCTGA 49102 || | || | | ||||| ||||| | ||| || || || |||| ||| |||| Sbjct 1199889 AACTCTTCGTCT----CCAAAATTGAATAAGATAACTCCAACATTTCCTCGATAATCTGC 1199834 Query 49103 GTCAATTACACCAGCACCTACGTCTATAAAATAATTATAAGCAAGCCCTGATCTAGGAGC 49162 ||| | |||||||| ||||| || ||| ||| || ||| | || |||| || || Sbjct 1199833 GTCGACAACACCAGCTCCTACATCGATAGAATGTTTGAGAGCTAATCCGGATCGTGGCGC 1199774 Query 49163 TATTCTACCGTAGTATCCATTAGGTATTT 49191 ||||| ||||| | ||| ||| |||| Sbjct 1199773 GATTCTTCCGTAACAGCCAGCAGGAATTT 1199745 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 903403961417760