Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Tetranychus_20urticae_20[refseq_20GCF_5F000239435.1_202011-12-20]
641 sequences; 90,828,597 total letters
Query= NC_024447.1
Length=282356
Score E
Sequences producing significant alignments: (Bits) Value
seq476 149 1e-30
seq453 140 6e-28
seq448 109 1e-18
seq451 91.5 3e-13
>seq476
Length=723144
Score = 149 bits (164), Expect = 1e-30
Identities = 214/299 (72%), Gaps = 2/299 (1%)
Strand=Plus/Minus
Query 183008 AAACACATGACCCTCTATGGAATGCATCACAAATACAGATGATGAGAGAAGGAAAAATGC 183067
|||| ||||| ||||| |||||||| | || || || || | | || | ||| | |
Sbjct 1825 AAACGCATGATCCTCTGTGGAATGCTTGTCAGATGCAATTGGTTCGCGATGCTAAACTTC 1766
Query 183068 ATAGTTTTTTACGAATGTACTGGGCTAAAAAGATACTTGAATGGACAAGAACTCCGGAAG 183127
|| ||| | ||||||| ||||||||||||||||||||||||| | | |||| ||||
Sbjct 1765 ATGGTTACATGAGAATGTATTGGGCTAAAAAGATACTTGAATGGAGTAAATCTCCCGAAG 1706
Query 183128 ATGCTTTGAGTTATAG-TATCTATATGAACAATAAGTACGAACTAGACGGTACGGATCCT 183186
| || || | || | ||||||| | || | || | ||||||||| ||| |||||
Sbjct 1705 AAGCACTG-GAAATCGCTATCTATTTAAATGACAATTTCGAACTAGATGGTCGTGATCCA 1647
Query 183187 AACGGATACGTAGGTTGTATGTGGTCTATTTGCGGATTACACGATAGAGCGTGGAAAGAA 183246
|| || | |||||| ||| | ||||| || | || |||| || || ||| |||
Sbjct 1646 AATGGTTTCGTAGGCTGTCTCTGGTCCGTTGGGGGTATACATGACCAAGGATGGGGTGAA 1587
Query 183247 AGACCTATATTTGGAAAGATAAGATATATGAATTATGAGAGTTCTAAGAAGAAATTTGA 183305
||| | || |||||||| ||| |||| ||||||||||| ||| || | ||||||||
Sbjct 1586 AGAGCGATCTTTGGAAAAATACGATACATGAATTATGAAGGTTGCAAAAGAAAATTTGA 1528
>seq453
Length=2394413
Score = 140 bits (154), Expect = 6e-28
Identities = 212/299 (71%), Gaps = 2/299 (1%)
Strand=Plus/Minus
Query 183008 AAACACATGACCCTCTATGGAATGCATCACAAATACAGATGATGAGAGAAGGAAAAATGC 183067
|||| ||||| ||||| |||||||| | || || || || | | || | ||| | |
Sbjct 2274851 AAACTCATGATCCTCTGTGGAATGCTTGTCAGATGCAATTGGTTCGCGATGCTAAACTTC 2274792
Query 183068 ATAGTTTTTTACGAATGTACTGGGCTAAAAAGATACTTGAATGGACAAGAACTCCGGAAG 183127
|| ||| | ||||||| ||||||||||||||||| ||||||| | | |||||||||
Sbjct 2274791 ATGGTTACATGAGAATGTATTGGGCTAAAAAGATACTAGAATGGAGTAAATCTCCGGAAG 2274732
Query 183128 ATGCTTTGAGTTATAG-TATCTATATGAACAATAAGTACGAACTAGACGGTACGGATCCT 183186
| || || | || | ||||||| | || | || | ||| |||| ||| |||||
Sbjct 2274731 AAGCACTG-GAAATCGCTATCTATTTAAATGACAAATTTGAATTAGATGGTCGCGATCCA 2274673
Query 183187 AACGGATACGTAGGTTGTATGTGGTCTATTTGCGGATTACACGATAGAGCGTGGAAAGAA 183246
|| || | |||||| ||| | ||||| || | || |||| || || ||| |||
Sbjct 2274672 AATGGTTTCGTAGGCTGTCTCTGGTCCGTTGGGGGTATACATGACCAAGGATGGGGTGAA 2274613
Query 183247 AGACCTATATTTGGAAAGATAAGATATATGAATTATGAGAGTTCTAAGAAGAAATTTGA 183305
||| | || |||||||| ||| |||| ||||||||||| ||| || | ||||||||
Sbjct 2274612 AGAGCGATCTTTGGAAAAATACGATACATGAATTATGAAGGTTGCAAAAGAAAATTTGA 2274554
>seq448
Length=3678511
Score = 109 bits (120), Expect = 1e-18
Identities = 168/237 (71%), Gaps = 2/237 (1%)
Strand=Plus/Minus
Query 142959 ATTTATACAGATAAAGATGAGTGGACTACTTGGaaaaaaaTACCCGATCCCGTCTTGCAT 143018
|||| || ||| | | || ||| | |||||||| |||| ||||||| || |||||
Sbjct 3039004 ATTTTCACTGATGATCAAGAATGGTCCTCTTGGAAACAAATGTCCGATCCTGTTTTGCAC 3038945
Query 143019 ATAGAACTTAGGAGATGGGCGGATGTTTTTCTTATAGCGCCCTTAACGGCAAATACGTTA 143078
|| ||||| | | |||||| ||| || | | || | || || || ||||| |||
Sbjct 3038944 ATTGAACTCCGTAAATGGGCTGATATTATGTTGATTTCTCCATTGGATGCTAATACTTTA 3038885
Query 143079 GCAAAAATAGCCAACGGTATATGCGATAATTTACTAACATCTATAGTAAGAGCCTGGGAT 143138
|| ||||| | ||||| || ||||| ||| |||| | ||||| | |||||||||
Sbjct 3038884 GCCAAAATCTCTTCTGGTATTTGTGATAACTTATTAACTTGTATAGCCCGTGCCTGGGAT 3038825
Query 143139 ATAAATAAACCTCTTATT-TTTTGTCCCGCTATGAATAGCCTTATGTGGGAACATCC 143194
| | || ||| ||||| |||||||| ||||||| | | ||||||||||||||
Sbjct 3038824 CTGCAAAAGCCT-TTATTATTTTGTCCATCTATGAACACATTCATGTGGGAACATCC 3038769
>seq451
Length=2993488
Score = 91.5 bits (100), Expect = 3e-13
Identities = 146/209 (70%), Gaps = 8/209 (4%)
Strand=Plus/Minus
Query 48987 TCTGGATATGCTATTTTTTCGAATATGATTTGAGCTATTCTATCACCCTTGGATACATTA 49046
||||||||||| ||| ||||| | || | |||||| ||||| || || ||| ||| | |
Sbjct 1199949 TCTGGATATGCGATTCTTTCGCAGATAAGTTGAGCGATTCTGTCTCCTTTGTTTACTTGA 1199890
Query 49047 AA----TGGTATAGAACTGAAATTAAATAATAGAACACCTACGTTACCTCTATAGTCTGA 49102
|| | || | | ||||| ||||| | ||| || || || |||| ||| ||||
Sbjct 1199889 AACTCTTCGTCT----CCAAAATTGAATAAGATAACTCCAACATTTCCTCGATAATCTGC 1199834
Query 49103 GTCAATTACACCAGCACCTACGTCTATAAAATAATTATAAGCAAGCCCTGATCTAGGAGC 49162
||| | |||||||| ||||| || ||| ||| || ||| | || |||| || ||
Sbjct 1199833 GTCGACAACACCAGCTCCTACATCGATAGAATGTTTGAGAGCTAATCCGGATCGTGGCGC 1199774
Query 49163 TATTCTACCGTAGTATCCATTAGGTATTT 49191
||||| ||||| | ||| ||| ||||
Sbjct 1199773 GATTCTTCCGTAACAGCCAGCAGGAATTT 1199745
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 903403961417760
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |