Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Tetranychus_20urticae_20[refseq_20GCF_5F000239435.1_202011-12-20]
641 sequences; 90,828,597 total letters
Query= NC_024625.1
Length=151109
Score E
Sequences producing significant alignments: (Bits) Value
seq444 114 1e-20
seq442 105 6e-18
>seq444
Length=5217058
Score = 114 bits (126), Expect = 1e-20
Identities = 151/207 (73%), Gaps = 2/207 (1%)
Strand=Plus/Plus
Query 133455 AAATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAG 133513
||||||| || || |||||||| || ||||| || | || ||| | ||||| ||
Sbjct 3541594 AAATGTAAAGTTGATTCTTTCTGAATGTTGTAGTCAGAAAGGGTTCGACCA-TCCTCAAG 3541652
Query 133514 CTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGAT 133573
||| || || ||| | ||||| ||||| || || || ||||| ||||||||||| |||
Sbjct 3541653 CTGTTTACCAGCGAAGATGAGACGCTGTTGATCAGGTGGGATTCCTTCCTTGTCTTGGAT 3541712
Query 133574 CTTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCC 133633
|| ||||| | |||| ||||||| || || || || | ||||| |||||| ||
Sbjct 3541713 TTTAGCCTTGACATTTTCAATGGTGTCGGAAGGTTCAACTTCCAAGGTGATGGTTTTACC 3541772
Query 133634 GGTCAGAGTTTTTACGAAAATCTGCAT 133660
|| || ||||| |||||||| |||||
Sbjct 3541773 AGTGAGGGTTTTGACGAAAATTTGCAT 3541799
Score = 111 bits (122), Expect = 2e-19
Identities = 153/209 (73%), Gaps = 4/209 (2%)
Strand=Plus/Plus
Query 133455 AAATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAG 133513
|| || | ||| |||||||| || || |||||||||| || || | | | || || ||
Sbjct 3542398 AAGTGAAGGGTAGACTCTTTTTGAATGTTGTAATCGCTCAGGGTACGTCCA-TCTTCAAG 3542456
Query 133514 CTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGAT 133573
||| || || ||| | || | ||||| || ||||| ||||| ||||||||||| |||
Sbjct 3542457 CTGTTTACCAGCGAAGATCAAACGCTGTTGATCGGGTGGGATACCTTCCTTGTCTTGGAT 3542516
Query 133574 CTTTTGCTTGAGC-TGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGC 133632
| || |||| | | | |||| ||||| | || || || || | ||||| |||||| |
Sbjct 3542517 C-TTGGCTTTAACATTTTCAATAGTGTCCGATGGTTCAACCTCAAGGGTGATGGTTTTTC 3542575
Query 133633 CGGTCAGAGTTTTTACGAAAATCTGCATG 133661
| || ||||| || |||||||| ||||||
Sbjct 3542576 CAGTAAGAGTCTTGACGAAAATTTGCATG 3542604
Score = 89.7 bits (98), Expect = 5e-13
Identities = 148/209 (71%), Gaps = 6/209 (3%)
Strand=Plus/Plus
Query 133455 AAATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGA--GTCCTCGA 133512
|| || | ||| || ||||| || ||||| ||||| | | || |||| ||||||||
Sbjct 3541822 AAGTGAAGGGTAGATTCTTTTTGAATATTATAATCACTGAGAGT--ACGACCGTCCTCGA 3541879
Query 133513 GCTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGA 133572
|||| || || ||| | || | || || ||||| || ||||| ||||| ||||| ||
Sbjct 3541880 GCTGTTTACCAGCGAAGATCAAACGTTGTTGGTCAGGTGGGATACCTTCTTTGTCTTGGA 3541939
Query 133573 TCTTTTGC-TTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTG 133631
| ||| || || | | |||| || || | || || || || | || | ||| ||
Sbjct 3541940 T-TTTGGCTTTCACGTTTTCAATAGTATCAGAAGGTTCAACCTCAAGTGTAATGGTCTTA 3541998
Query 133632 CCGGTCAGAGTTTTTACGAAAATCTGCAT 133660
|| || ||||||||||||||||| |||||
Sbjct 3541999 CCAGTAAGAGTTTTTACGAAAATTTGCAT 3542027
>seq442
Length=7801961
Score = 105 bits (116), Expect = 6e-18
Identities = 347/536 (65%), Gaps = 10/536 (2%)
Strand=Plus/Plus
Query 148046 ATTAAACGACTGGCTCTGGTCAATGAACGCGCCACGGTCAGCGGCCATTTCAATGAGTCG 148105
||| || || || || || ||||| || || ||||| ||||| |||||||| | || |
Sbjct 3251730 ATTTAAAGATTGACTTTGATCAATAAAAGCTCCACGTTCAGCAGCCATTTCCA-GAATAT 3251788
Query 148106 CTTTATCTTCA-TCTCCCAGGCCGTCTTGTACAGCCGCTTGATATGATCGGGAATGCCGT 148164
||| | | | ||||| | || |||| |||| |||| || || || || |
Sbjct 3251789 TTTTTTGAGGAATTTCCCAAACAGTTCGATACAATTGCTTAATATCCTCTGGGATACCTT 3251848
Query 148165 CGATGCGCTGCACCGAGCCGCGGTGCGCAAAAATCTGATTGCGCATTTCGTCCGTGTATA 148224
| || || | ||||| | ||| || |||||| | | ||| || || | | |
Sbjct 3251849 CAATAGCTTGAATGGAGCCTCTGTGATAAATAATCTGTTCTCTCATGTCTTCATTCCAAA 3251908
Query 148225 GGTTGAGCTCGATCAGG----TCATCGATCAGATACTGATTCACCACCTGAAACTCGCCG 148280
| | ||||||||| || | || |||| || || || || ||||| || ||
Sbjct 3251909 GTT----CTCGATCAGTCAAATCTTTGACAAGATGGTGGTTAACTACTTGAAATTCACCA 3251964
Query 148281 GCGAGCACGCGCCGCAGATACACGTTGCTCGTAAACGGTTCAAACGACTCGTTGTTGCCC 148340
| || || || || ||| | ||| || ||| | ||||||| || |||||||| |||
Sbjct 3251965 GAAAGAACTCGTCGAGTATAGATGTTACTTGTATATGGTTCAATAGATTCGTTGTTCCCC 3252024
Query 148341 AAAATCTGCGCGGTCGTTGCCGTGGGCATGTACGCTACCAGCAGCGAGTTGCGCAAACCG 148400
|||||||| || || | ||| || |||||| ||||| | ||| ||| || | |||
Sbjct 3252025 AAAATCTGAGCAGTTGATGCTGTAGGCATGGGCGCTAATAACAGACTGTTTCGAAGACCA 3252084
Query 148401 CGATTTTTTATTTTGCGCTTCAGAGCCGCCCAGTCCCAGAGCGGCGACGGTGTCACGTTC 148460
| || ||||| | |||||| | | ||||||||| || || ||||| || |
Sbjct 3252085 TGTTTAGCAATTTTACTCTTCAGCTCTGTCCAGTCCCACAGATTAGATGGTGTTACACCC 3252144
Query 148461 CACATGTCGTACTGCAGAATGCCGCGGCTAGCGGGGCTGCCCTCGTACGAGCTGTACGGT 148520
||||| || || |||| ||| || |||||| || | || | ||| |||
Sbjct 3252145 CACATATCATATTGCAAAATCCCTTTAGAAGCGGGAGATCCTGCATAAGTTTCGTAAGGT 3252204
Query 148521 CCGTGCGCCGCCGCCAGTTCGCAGCTCGCCTCGAGCGCGCCGTAGTAAATCGTCTC 148576
||| | | | || || || || || || ||||| || || || || || |||||
Sbjct 3252205 CCGAGTTCTTCAGCGAGCTCACAACTTGCTTCGAGAGCTCCATAATAGATTGTCTC 3252260
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 483416926590840
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |