Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tetranychus_20urticae_20[refseq_20GCF_5F000239435.1_202011-12-20] 641 sequences; 90,828,597 total letters Query= NC_024625.1 Length=151109 Score E Sequences producing significant alignments: (Bits) Value seq444 114 1e-20 seq442 105 6e-18 >seq444 Length=5217058 Score = 114 bits (126), Expect = 1e-20 Identities = 151/207 (73%), Gaps = 2/207 (1%) Strand=Plus/Plus Query 133455 AAATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAG 133513 ||||||| || || |||||||| || ||||| || | || ||| | ||||| || Sbjct 3541594 AAATGTAAAGTTGATTCTTTCTGAATGTTGTAGTCAGAAAGGGTTCGACCA-TCCTCAAG 3541652 Query 133514 CTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGAT 133573 ||| || || ||| | ||||| ||||| || || || ||||| ||||||||||| ||| Sbjct 3541653 CTGTTTACCAGCGAAGATGAGACGCTGTTGATCAGGTGGGATTCCTTCCTTGTCTTGGAT 3541712 Query 133574 CTTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCC 133633 || ||||| | |||| ||||||| || || || || | ||||| |||||| || Sbjct 3541713 TTTAGCCTTGACATTTTCAATGGTGTCGGAAGGTTCAACTTCCAAGGTGATGGTTTTACC 3541772 Query 133634 GGTCAGAGTTTTTACGAAAATCTGCAT 133660 || || ||||| |||||||| ||||| Sbjct 3541773 AGTGAGGGTTTTGACGAAAATTTGCAT 3541799 Score = 111 bits (122), Expect = 2e-19 Identities = 153/209 (73%), Gaps = 4/209 (2%) Strand=Plus/Plus Query 133455 AAATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAG 133513 || || | ||| |||||||| || || |||||||||| || || | | | || || || Sbjct 3542398 AAGTGAAGGGTAGACTCTTTTTGAATGTTGTAATCGCTCAGGGTACGTCCA-TCTTCAAG 3542456 Query 133514 CTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGAT 133573 ||| || || ||| | || | ||||| || ||||| ||||| ||||||||||| ||| Sbjct 3542457 CTGTTTACCAGCGAAGATCAAACGCTGTTGATCGGGTGGGATACCTTCCTTGTCTTGGAT 3542516 Query 133574 CTTTTGCTTGAGC-TGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGC 133632 | || |||| | | | |||| ||||| | || || || || | ||||| |||||| | Sbjct 3542517 C-TTGGCTTTAACATTTTCAATAGTGTCCGATGGTTCAACCTCAAGGGTGATGGTTTTTC 3542575 Query 133633 CGGTCAGAGTTTTTACGAAAATCTGCATG 133661 | || ||||| || |||||||| |||||| Sbjct 3542576 CAGTAAGAGTCTTGACGAAAATTTGCATG 3542604 Score = 89.7 bits (98), Expect = 5e-13 Identities = 148/209 (71%), Gaps = 6/209 (3%) Strand=Plus/Plus Query 133455 AAATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGA--GTCCTCGA 133512 || || | ||| || ||||| || ||||| ||||| | | || |||| |||||||| Sbjct 3541822 AAGTGAAGGGTAGATTCTTTTTGAATATTATAATCACTGAGAGT--ACGACCGTCCTCGA 3541879 Query 133513 GCTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGA 133572 |||| || || ||| | || | || || ||||| || ||||| ||||| ||||| || Sbjct 3541880 GCTGTTTACCAGCGAAGATCAAACGTTGTTGGTCAGGTGGGATACCTTCTTTGTCTTGGA 3541939 Query 133573 TCTTTTGC-TTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTG 133631 | ||| || || | | |||| || || | || || || || | || | ||| || Sbjct 3541940 T-TTTGGCTTTCACGTTTTCAATAGTATCAGAAGGTTCAACCTCAAGTGTAATGGTCTTA 3541998 Query 133632 CCGGTCAGAGTTTTTACGAAAATCTGCAT 133660 || || ||||||||||||||||| ||||| Sbjct 3541999 CCAGTAAGAGTTTTTACGAAAATTTGCAT 3542027 >seq442 Length=7801961 Score = 105 bits (116), Expect = 6e-18 Identities = 347/536 (65%), Gaps = 10/536 (2%) Strand=Plus/Plus Query 148046 ATTAAACGACTGGCTCTGGTCAATGAACGCGCCACGGTCAGCGGCCATTTCAATGAGTCG 148105 ||| || || || || || ||||| || || ||||| ||||| |||||||| | || | Sbjct 3251730 ATTTAAAGATTGACTTTGATCAATAAAAGCTCCACGTTCAGCAGCCATTTCCA-GAATAT 3251788 Query 148106 CTTTATCTTCA-TCTCCCAGGCCGTCTTGTACAGCCGCTTGATATGATCGGGAATGCCGT 148164 ||| | | | ||||| | || |||| |||| |||| || || || || | Sbjct 3251789 TTTTTTGAGGAATTTCCCAAACAGTTCGATACAATTGCTTAATATCCTCTGGGATACCTT 3251848 Query 148165 CGATGCGCTGCACCGAGCCGCGGTGCGCAAAAATCTGATTGCGCATTTCGTCCGTGTATA 148224 | || || | ||||| | ||| || |||||| | | ||| || || | | | Sbjct 3251849 CAATAGCTTGAATGGAGCCTCTGTGATAAATAATCTGTTCTCTCATGTCTTCATTCCAAA 3251908 Query 148225 GGTTGAGCTCGATCAGG----TCATCGATCAGATACTGATTCACCACCTGAAACTCGCCG 148280 | | ||||||||| || | || |||| || || || || ||||| || || Sbjct 3251909 GTT----CTCGATCAGTCAAATCTTTGACAAGATGGTGGTTAACTACTTGAAATTCACCA 3251964 Query 148281 GCGAGCACGCGCCGCAGATACACGTTGCTCGTAAACGGTTCAAACGACTCGTTGTTGCCC 148340 | || || || || ||| | ||| || ||| | ||||||| || |||||||| ||| Sbjct 3251965 GAAAGAACTCGTCGAGTATAGATGTTACTTGTATATGGTTCAATAGATTCGTTGTTCCCC 3252024 Query 148341 AAAATCTGCGCGGTCGTTGCCGTGGGCATGTACGCTACCAGCAGCGAGTTGCGCAAACCG 148400 |||||||| || || | ||| || |||||| ||||| | ||| ||| || | ||| Sbjct 3252025 AAAATCTGAGCAGTTGATGCTGTAGGCATGGGCGCTAATAACAGACTGTTTCGAAGACCA 3252084 Query 148401 CGATTTTTTATTTTGCGCTTCAGAGCCGCCCAGTCCCAGAGCGGCGACGGTGTCACGTTC 148460 | || ||||| | |||||| | | ||||||||| || || ||||| || | Sbjct 3252085 TGTTTAGCAATTTTACTCTTCAGCTCTGTCCAGTCCCACAGATTAGATGGTGTTACACCC 3252144 Query 148461 CACATGTCGTACTGCAGAATGCCGCGGCTAGCGGGGCTGCCCTCGTACGAGCTGTACGGT 148520 ||||| || || |||| ||| || |||||| || | || | ||| ||| Sbjct 3252145 CACATATCATATTGCAAAATCCCTTTAGAAGCGGGAGATCCTGCATAAGTTTCGTAAGGT 3252204 Query 148521 CCGTGCGCCGCCGCCAGTTCGCAGCTCGCCTCGAGCGCGCCGTAGTAAATCGTCTC 148576 ||| | | | || || || || || || ||||| || || || || || ||||| Sbjct 3252205 CCGAGTTCTTCAGCGAGCTCACAACTTGCTTCGAGAGCTCCATAATAGATTGTCTC 3252260 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 483416926590840