Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Tetranychus_20urticae_20[refseq_20GCF_5F000239435.1_202011-12-20]
641 sequences; 90,828,597 total letters
Query= NC_024697.1
Length=370920
Score E
Sequences producing significant alignments: (Bits) Value
seq442 206 6e-48
seq468 114 3e-20
seq453 114 3e-20
seq448 98.7 2e-15
>seq442
Length=7801961
Score = 206 bits (228), Expect = 6e-48
Identities = 574/869 (66%), Gaps = 26/869 (3%)
Strand=Plus/Minus
Query 110300 TGACTATTTTGGTTTCAAAACTCTTGAACGTGCTTATTTACTTCGTGTCAATGGCGAGAT 110359
||| ||||||||||||||||| | ||| | | || | ||| ||||||| | |
Sbjct 3253425 TGATTATTTTGGTTTCAAAACCTTGGAAAGATCATACCTTCTTAAAATCAATGGTAAAGT 3253366
Query 110360 CATTGAACGTCCTCAACACATGTTTCTTCGTGTTGCGATTGGTATTCATGGACATGATAT 110419
||||| | || ||||| ||| | | | ||||| |||| ||||||||| ||||||
Sbjct 3253365 AGTTGAAAGGCCGCAACATATGCTAATGAGAGTTGCTGTTGGAATTCATGGATCTGATAT 3253306
Query 110420 TAAAGCTG--TTATTGAATGTTATGATGTATTAA-GTAAAAAGAAAGCTATTCA--TGCT 110474
| || | | ||| || || || ||||| || || || | | | || ||||
Sbjct 3253305 TGAATCAGCCTTACAGACC--TACGA---ATTAATGTCTCAAAAATGGTTTACACATGCT 3253251
Query 110475 ACTCCTACCCTATTTAACGCAGGAACTAATGGAGGACAATTGGCTTCTTGCTTTCTTCTA 110534
|||||||||| ||||| || || || | || || | || ||| |||||| ||
Sbjct 3253250 TCTCCTACCCTTTTTAATGCTGGTACACCTCGACCTCAGCTATCTAGTTGTTTTCTTTTA 3253191
Query 110535 GGAATTAACGATGATTCTATTGAAGGTATTTATGATGCTCTTAAAGAAACTGCTCTTATT 110594
||| | || ||| ||||||||| || | ||| || | ||||| | | | |||
Sbjct 3253190 TCAATGAGGGAAGATAGTATTGAAGGAATATCCGATACTTTGAAAGATTGTAATTTGATT 3253131
Query 110595 TCTAAAAACTCTGGAGGAATTGGTATTCACGTTCATGATATTCGCTCAAAAGGAGCAAAT 110654
|||||| | |||| ||||||||| | | |||||| |||||| | |||||| |
Sbjct 3253130 TCTAAATATGCTGGTGGAATTGGTCTCAATGTTCATTGTATTCGAGCGAAAGGAACCCGA 3253071
Query 110655 ATCGCAACAGCGAAGGGTGCTTCAACTGGACTTGTTCCAATGTTAAGAGTCTTCAACGAC 110714
||| | | || ||| || ||| || || || ||| | | | | || || ||
Sbjct 3253070 ATCAGAGGGACAAATGGTTTCTCTGATGGTCTCGTGCCTATGCTGAAAATGTTTAATGAA 3253011
Query 110715 ACTGCAAAATATGTGAATCAAGGTGGTAAGAGAAATGGCTCATTTGCTATCTATCTCGAA 110774
|||| ||||| || ||||| ||||| || || | | |||||| ||| | ||
Sbjct 3253010 TCTGCTCGTTATGTCAACCAAGGGGGTAAACGACCAGGAGCTTATGCTATTTATATTGAG 3252951
Query 110775 CCTTGGCATTCAGATATATTTGAATTCTTAGAACTTCGTAAAAATCAAGGATTT-GAAGA 110833
||||||||| | ||| | ||||| ||| || ||| ||||| || | | |||||
Sbjct 3252950 CCTTGGCATGCTGATGTCTTTGATTTCCTATG-CTTAAGAAAAAACACTGGTAAAGAAGA 3252892
Query 110834 ACAAAGAGCACGTGATTTATTTTATGCAATGTGGATTTCAGATTTATTCATGAAACGTGT 110893
||||| || ||||| |||| || | ||| | | || | || ||| | || ||
Sbjct 3252891 GATGAGAGCTCGAGATTTGTTTTTAGCTCTTTGGGTGCCTAATCTTTTTATGGAGCGAGT 3252832
Query 110894 TCAAGAAAATGGCATGTGGTCTCTTATGTGTCCTCATCGTTCTCCTGGTCTATCTGATGT 110953
| || || ||| |||||| |||||||||||| || | ||||||||||| || ||
Sbjct 3252831 TAAAAAAGATGAAATGTGGAGTCTTATGTGTCCACACAAATGTCCTGGTCTATTCGAAGT 3252772
Query 110954 ATATGGAAAAGAGTTTGAAGACCTTTACGAAAAATATGAAAAAGAAGGCAAGTTTC---- 111009
|||||| | || || | | ||||| | ||||||||| ||||| ||| | |
Sbjct 3252771 TTATGGAGATGAATTCAATAAGCTTTATGTTAAATATGAAGAAGAA-AAAAGATACAATC 3252713
Query 111010 -GCAAACAAATTCCAGCTCAAGAACTTTGGTTCAA--AATCCTTGAATCACAAGTTGAAA 111066
||||| ||| ||||| || |||||| ||| |||| |||| | || | ||||
Sbjct 3252712 AGCAAATAAA----AGCTCGAGCTCTTTGG--CAAGCAATCATTGATGCCCAGATGGAAA 3252659
Query 111067 CTGGAACTCCTTATATTTTGTATAAAGATCATATTAATCGCAAATCTAATCAAATGAATT 111126
|||| ||| ||||| | |||||||||||| |||| || || ||||| | |||
Sbjct 3252658 CTGGTGTTCCGTATATGCTTTATAAAGATCATTGTAATGAAAAGTCCAATCAGAAAAATC 3252599
Query 111127 TAGGAACAATTAAGTCTAGTAATTTGTGC 111155
| ||||| || |||| | ||| |||||
Sbjct 3252598 TTGGAACCATCAAGTGTTCAAATCTGTGC 3252570
>seq468
Length=1118636
Score = 114 bits (126), Expect = 3e-20
Identities = 212/311 (68%), Gaps = 0/311 (0%)
Strand=Plus/Minus
Query 131804 AAAGCAGAATGGGCTATTAAATGGATTCAAGATGATTCCGCTAATTTTTCTACAAGACTT 131863
|| || |||||||| || || |||| | | || || | |||| | |||| |
Sbjct 1106484 AAGGCTGAATGGGCAATAAACTGGACTGCAAATCCATCAGTCTCTTTTGCCGAAAGATTG 1106425
Query 131864 GTAGCTTTTGCTTGTGTTGAAGGTATATTCTTTTCAGGTGCTTTCTGTGCTATCTTTTGG 131923
| || ||||| |||||||||||||| || || ||||| ||||| ||||||||||||
Sbjct 1106424 ATTGCCTTTGCATGTGTTGAAGGTATCTTTTTCTCAGGCTCTTTCGCCGCTATCTTTTGG 1106365
Query 131924 CTTAAGAAGCGTGGATTGATGCCTGGACTCTCATTGTCCAATCAATTCATCTCGAGAGAT 131983
||||| |||||||| ||||||| || | | || || || || | ||||| |||||
Sbjct 1106364 CTTAAAAAGCGTGGCCTGATGCCAGGTTTAACTTTCTCTAACGAACTTATCTCTCGAGAT 1106305
Query 131984 GAAGCATTGCATACTGAATTTGCTATATTAATCTATAGAAAATTTGCTGATAAACTTGAT 132043
|||| ||| ||| ||| ||||| || | | || | | ||| | | | || |
Sbjct 1106304 GAAGGATTACATTGTGATTTTGCCTGTTTGTTATTTAAATATGTTGTTAAAAGACCGAGT 1106245
Query 132044 GAAAATAATATTAAACAACTTATAAGCGAAGCAGTTGATATCGAGAAGGAGTTTATTACA 132103
||||| | |||| || || | | | || || || || |||||| || | ||| | ||
Sbjct 1106244 GAAAAAATTATTCAAGAAATAGTGCGAGATGCTGTGGAAATCGAGCAGAAATTTTTAACC 1106185
Query 132104 GAAGCTTTGCC 132114
|| || |||||
Sbjct 1106184 GAGGCATTGCC 1106174
>seq453
Length=2394413
Score = 114 bits (126), Expect = 3e-20
Identities = 212/311 (68%), Gaps = 0/311 (0%)
Strand=Plus/Minus
Query 131804 AAAGCAGAATGGGCTATTAAATGGATTCAAGATGATTCCGCTAATTTTTCTACAAGACTT 131863
|| || |||||||| || || |||| | | || || | |||| | |||| |
Sbjct 11936 AAGGCTGAATGGGCAATAAACTGGACTGCAAATCCATCAGTCTCTTTTGCCGAAAGATTG 11877
Query 131864 GTAGCTTTTGCTTGTGTTGAAGGTATATTCTTTTCAGGTGCTTTCTGTGCTATCTTTTGG 131923
| || ||||| |||||||||||||| || || ||||| ||||| ||||||||||||
Sbjct 11876 ATTGCCTTTGCATGTGTTGAAGGTATCTTTTTCTCAGGCTCTTTCGCCGCTATCTTTTGG 11817
Query 131924 CTTAAGAAGCGTGGATTGATGCCTGGACTCTCATTGTCCAATCAATTCATCTCGAGAGAT 131983
||||| |||||||| ||||||| || | | || || || || | ||||| |||||
Sbjct 11816 CTTAAAAAGCGTGGCCTGATGCCAGGTTTAACTTTCTCTAACGAACTTATCTCTCGAGAT 11757
Query 131984 GAAGCATTGCATACTGAATTTGCTATATTAATCTATAGAAAATTTGCTGATAAACTTGAT 132043
|||| ||| ||| ||| ||||| || | | || | | ||| | | | || |
Sbjct 11756 GAAGGATTACATTGTGATTTTGCCTGTTTGTTATTTAAATATGTTGTTAAAAGACCGAGT 11697
Query 132044 GAAAATAATATTAAACAACTTATAAGCGAAGCAGTTGATATCGAGAAGGAGTTTATTACA 132103
||||| | |||| || || | | | || || || || |||||| || | ||| | ||
Sbjct 11696 GAAAAAATTATTCAAGAAATAGTGCGAGATGCTGTGGAAATCGAGCAGAAATTTTTAACC 11637
Query 132104 GAAGCTTTGCC 132114
|| || |||||
Sbjct 11636 GAGGCATTGCC 11626
Score = 104 bits (114), Expect = 6e-17
Identities = 156/221 (71%), Gaps = 3/221 (1%)
Strand=Plus/Minus
Query 304883 AATTTAC---AATATCATATTGCAACATTAATGGATAATGAAATTGCTGGAATTATGCAG 304939
||||||| |||| ||| |||| || | || || |||||| || ||||||| | |
Sbjct 1543260 AATTTACTTCAATACCATGTTGCTACGCTTATTGACAATGAACTTCCTGGAATACCTCGG 1543201
Query 304940 GCATCTCAAAGATCTGGCAGACCTTTAAAGGGTATTAGGCAACGCATTAAAGGTAAAGAG 304999
|| |||| |||||| || || || || || | |||| | | ||| |||||
Sbjct 1543200 GCTATGCAAAAATCTGGTAGGCCATTGAAATCAATCAAGCAAAGATTAAAATCCAAAGAA 1543141
Query 305000 GGTCGTATTCGAGGTAATCTAATGGGAAAACGTGTTGATTTTAGTGCAAGAAGTGTAATC 305059
||||||||| |||| ||| ||||||| |||||||||||||| ||| | | ||||||
Sbjct 1543140 GGTCGTATTAGAGGAAATTTAATGGGTAAACGTGTTGATTTCTCTGCTCGTACTGTAATT 1543081
Query 305060 ACACCTGATTCTCAAATTAGTCTTCATGAATTAGGAGTTCC 305100
||||||||| | | |||| | ||||| | || |||||
Sbjct 1543080 ACACCTGATCCCAATCTTAGAATCGATGAAGTCGGTGTTCC 1543040
>seq448
Length=3678511
Score = 98.7 bits (108), Expect = 2e-15
Identities = 301/452 (67%), Gaps = 24/452 (5%)
Strand=Plus/Minus
Query 279854 CGTTCTATTCC-TCATTTAATGGATGGTTTGAAACCTTCACAGCGTAAGATTATATTCAG 279912
|| || ||||| ||| | ||||||||| || |||||| || | ||| || | || |
Sbjct 134311 CGATCGATTCCATCAGT-AATGGATGGATTCAAACCTGGCCAAAGAAAGGTTTTGTTTAC 134253
Query 279913 TTGTTTCAAAAGAAAATTGGTAAAGGAAATTCGTGTTGCTCAGTTAGCAGGTTATGTT-- 279970
||||||||| |||| ||| || |||| | || ||||||||||| ||| |||
Sbjct 134252 ATGTTTCAAACGAAATTTGAAGAATGAAACTAAAGTAGCTCAGTTAGCTGGTACCGTTGG 134193
Query 279971 -TCAGAACATGCAGGTTATCATCACGGTGAAGCGTCTCTTCAAG-GTGCTATTGTAGGTC 280028
|| ||| ||| || ||||||||||||| |||| || | | | | ||||| ||
Sbjct 134192 CTCCGAA---TCAGCATACCATCACGGTGAAGTGTCT-TTGATGTCTACAATTGTCAGTT 134137
Query 280029 TTGCCCAAGATTTT-ATGGCTTCAAACAACTTAAATC---TGCTTTCACCAAATGGTCAA 280084
| || ||||||||| |||| | |||||| |||||| ||||| ||| |||||||
Sbjct 134136 TGGCTCAAGATTTTGTTGGCAGC-AACAACATAAATCTATTGCTT---CCACTTGGTCAA 134081
Query 280085 TTTGGTTCTCGTATTCACAATGGAAAAGATCATGGTAGTGCTCGTTACA--TACA-TACA 280141
|| || || | | || ||| |||||| | ||||||||||| | | || | |
Sbjct 134080 TTCGGGACTAGATTGCAGGGTGGTAAAGATGCCGCCAGTGCTCGTTATATTTTCACCAAA 134021
Query 280142 TGTCTTTCAGATATTACAAACAAGTTATTTATCAATTCTGATAATGCTTCATTAGAGTGG 280201
| | || | || ||| | ||||| ||| | ||| | ||| | | | |
Sbjct 134020 TTGAGTCCACTTGCTAGAAAAA---TATTTTCCAAGTTAGATGAACCTTTACTCCATTAT 133964
Query 280202 CTAGAGGATGATGGTCTTGCTATTGAACCAACATATTATGCTCCAATTATCCCTATGATT 280261
||| | |||||| || |||||||| |||||||| || || |||| ||| |
Sbjct 133963 CTATACGATGATAATCAACGAGTTGAACCAGAATATTATGTCCCTATACTCCCAATGGTG 133904
Query 280262 CTTGTTAATGGTGCTCAAGGAATTGGAACAGG 280293
| || ||||| ||| | ||||||||||| ||
Sbjct 133903 TTGGTAAATGGAGCTGACGGAATTGGAACCGG 133872
Score = 93.3 bits (102), Expect = 1e-13
Identities = 300/452 (66%), Gaps = 24/452 (5%)
Strand=Plus/Plus
Query 279854 CGTTCTATTCC-TCATTTAATGGATGGTTTGAAACCTTCACAGCGTAAGATTATATTCAG 279912
|| || ||||| ||| | ||||||||| || |||||| || | || || | || |
Sbjct 51308 CGATCGATTCCATCAGT-AATGGATGGATTCAAACCTGGCCAAAGAAAAGTTTTGTTTAC 51366
Query 279913 TTGTTTCAAAAGAAAATTGGTAAAGGAAATTCGTGTTGCTCAGTTAGCAGGT---TATGT 279969
|||||||| |||| ||| || |||| | || ||||||||||||||| ||
Sbjct 51367 ATGTTTCAAGCGAAATTTGAAGAATGAAACTAAAGTAGCTCAGTTAGCAGGTACCGTTGG 51426
Query 279970 TTCAGAACATGCAGGTTATCATCACGGTGAAGCGTCTCTTCAAG-GTGCTATTGTAGGTC 280028
||| ||| ||| || ||||||||||||| |||| || | | | | ||||| ||
Sbjct 51427 TTCGGAA---TCAGCATACCATCACGGTGAAGTGTCT-TTGATGTCTACAATTGTCAGTT 51482
Query 280029 TTGCCCAAGATTTT-ATGGCTTCAAACAACTTAAATC---TGCTTTCACCAAATGGTCAA 280084
| || ||||||||| |||| | |||||| |||||| ||||| ||| |||||||
Sbjct 51483 TGGCTCAAGATTTTGTTGGCAGC-AACAACATAAATCTATTGCTT---CCACTTGGTCAA 51538
Query 280085 TTTGGTTCTCGTATTCACAATGGAAAAGATCATGGTAGTGCTCGTTACA--TACA-TACA 280141
|| || || | | || ||| |||||| || |||||||| || | | || | |
Sbjct 51539 TTCGGGACTAGATTGCAGGGTGGTAAAGATGCTGCCAGTGCTCGCTATATTTTCACCAAA 51598
Query 280142 TGTCTTTCAGATATTACAAACAAGTTATTTATCAATTCTGATAATGCTTCATTAGAGTGG 280201
| | || | || ||| | ||||| ||| | ||| | ||| | | | |
Sbjct 51599 TTGAGTCCACTTGCTAGAAAAA---TATTTTCCAAGTTAGATGAACCTTTACTCCATTAT 51655
Query 280202 CTAGAGGATGATGGTCTTGCTATTGAACCAACATATTATGCTCCAATTATCCCTATGATT 280261
||| | |||||| || |||||||| |||||||| || || |||| ||| |
Sbjct 51656 CTATACGATGATAATCAACGAGTTGAACCAGAATATTATGTCCCTATACTCCCAATGGTG 51715
Query 280262 CTTGTTAATGGTGCTCAAGGAATTGGAACAGG 280293
| || ||||| ||| | ||||||||||| ||
Sbjct 51716 TTGGTAAATGGAGCTGACGGAATTGGAACCGG 51747
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1186803052929001
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |