Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tetranychus_20urticae_20[refseq_20GCF_5F000239435.1_202011-12-20] 641 sequences; 90,828,597 total letters Query= NC_024697.1 Length=370920 Score E Sequences producing significant alignments: (Bits) Value seq442 206 6e-48 seq468 114 3e-20 seq453 114 3e-20 seq448 98.7 2e-15 >seq442 Length=7801961 Score = 206 bits (228), Expect = 6e-48 Identities = 574/869 (66%), Gaps = 26/869 (3%) Strand=Plus/Minus Query 110300 TGACTATTTTGGTTTCAAAACTCTTGAACGTGCTTATTTACTTCGTGTCAATGGCGAGAT 110359 ||| ||||||||||||||||| | ||| | | || | ||| ||||||| | | Sbjct 3253425 TGATTATTTTGGTTTCAAAACCTTGGAAAGATCATACCTTCTTAAAATCAATGGTAAAGT 3253366 Query 110360 CATTGAACGTCCTCAACACATGTTTCTTCGTGTTGCGATTGGTATTCATGGACATGATAT 110419 ||||| | || ||||| ||| | | | ||||| |||| ||||||||| |||||| Sbjct 3253365 AGTTGAAAGGCCGCAACATATGCTAATGAGAGTTGCTGTTGGAATTCATGGATCTGATAT 3253306 Query 110420 TAAAGCTG--TTATTGAATGTTATGATGTATTAA-GTAAAAAGAAAGCTATTCA--TGCT 110474 | || | | ||| || || || ||||| || || || | | | || |||| Sbjct 3253305 TGAATCAGCCTTACAGACC--TACGA---ATTAATGTCTCAAAAATGGTTTACACATGCT 3253251 Query 110475 ACTCCTACCCTATTTAACGCAGGAACTAATGGAGGACAATTGGCTTCTTGCTTTCTTCTA 110534 |||||||||| ||||| || || || | || || | || ||| |||||| || Sbjct 3253250 TCTCCTACCCTTTTTAATGCTGGTACACCTCGACCTCAGCTATCTAGTTGTTTTCTTTTA 3253191 Query 110535 GGAATTAACGATGATTCTATTGAAGGTATTTATGATGCTCTTAAAGAAACTGCTCTTATT 110594 ||| | || ||| ||||||||| || | ||| || | ||||| | | | ||| Sbjct 3253190 TCAATGAGGGAAGATAGTATTGAAGGAATATCCGATACTTTGAAAGATTGTAATTTGATT 3253131 Query 110595 TCTAAAAACTCTGGAGGAATTGGTATTCACGTTCATGATATTCGCTCAAAAGGAGCAAAT 110654 |||||| | |||| ||||||||| | | |||||| |||||| | |||||| | Sbjct 3253130 TCTAAATATGCTGGTGGAATTGGTCTCAATGTTCATTGTATTCGAGCGAAAGGAACCCGA 3253071 Query 110655 ATCGCAACAGCGAAGGGTGCTTCAACTGGACTTGTTCCAATGTTAAGAGTCTTCAACGAC 110714 ||| | | || ||| || ||| || || || ||| | | | | || || || Sbjct 3253070 ATCAGAGGGACAAATGGTTTCTCTGATGGTCTCGTGCCTATGCTGAAAATGTTTAATGAA 3253011 Query 110715 ACTGCAAAATATGTGAATCAAGGTGGTAAGAGAAATGGCTCATTTGCTATCTATCTCGAA 110774 |||| ||||| || ||||| ||||| || || | | |||||| ||| | || Sbjct 3253010 TCTGCTCGTTATGTCAACCAAGGGGGTAAACGACCAGGAGCTTATGCTATTTATATTGAG 3252951 Query 110775 CCTTGGCATTCAGATATATTTGAATTCTTAGAACTTCGTAAAAATCAAGGATTT-GAAGA 110833 ||||||||| | ||| | ||||| ||| || ||| ||||| || | | ||||| Sbjct 3252950 CCTTGGCATGCTGATGTCTTTGATTTCCTATG-CTTAAGAAAAAACACTGGTAAAGAAGA 3252892 Query 110834 ACAAAGAGCACGTGATTTATTTTATGCAATGTGGATTTCAGATTTATTCATGAAACGTGT 110893 ||||| || ||||| |||| || | ||| | | || | || ||| | || || Sbjct 3252891 GATGAGAGCTCGAGATTTGTTTTTAGCTCTTTGGGTGCCTAATCTTTTTATGGAGCGAGT 3252832 Query 110894 TCAAGAAAATGGCATGTGGTCTCTTATGTGTCCTCATCGTTCTCCTGGTCTATCTGATGT 110953 | || || ||| |||||| |||||||||||| || | ||||||||||| || || Sbjct 3252831 TAAAAAAGATGAAATGTGGAGTCTTATGTGTCCACACAAATGTCCTGGTCTATTCGAAGT 3252772 Query 110954 ATATGGAAAAGAGTTTGAAGACCTTTACGAAAAATATGAAAAAGAAGGCAAGTTTC---- 111009 |||||| | || || | | ||||| | ||||||||| ||||| ||| | | Sbjct 3252771 TTATGGAGATGAATTCAATAAGCTTTATGTTAAATATGAAGAAGAA-AAAAGATACAATC 3252713 Query 111010 -GCAAACAAATTCCAGCTCAAGAACTTTGGTTCAA--AATCCTTGAATCACAAGTTGAAA 111066 ||||| ||| ||||| || |||||| ||| |||| |||| | || | |||| Sbjct 3252712 AGCAAATAAA----AGCTCGAGCTCTTTGG--CAAGCAATCATTGATGCCCAGATGGAAA 3252659 Query 111067 CTGGAACTCCTTATATTTTGTATAAAGATCATATTAATCGCAAATCTAATCAAATGAATT 111126 |||| ||| ||||| | |||||||||||| |||| || || ||||| | ||| Sbjct 3252658 CTGGTGTTCCGTATATGCTTTATAAAGATCATTGTAATGAAAAGTCCAATCAGAAAAATC 3252599 Query 111127 TAGGAACAATTAAGTCTAGTAATTTGTGC 111155 | ||||| || |||| | ||| ||||| Sbjct 3252598 TTGGAACCATCAAGTGTTCAAATCTGTGC 3252570 >seq468 Length=1118636 Score = 114 bits (126), Expect = 3e-20 Identities = 212/311 (68%), Gaps = 0/311 (0%) Strand=Plus/Minus Query 131804 AAAGCAGAATGGGCTATTAAATGGATTCAAGATGATTCCGCTAATTTTTCTACAAGACTT 131863 || || |||||||| || || |||| | | || || | |||| | |||| | Sbjct 1106484 AAGGCTGAATGGGCAATAAACTGGACTGCAAATCCATCAGTCTCTTTTGCCGAAAGATTG 1106425 Query 131864 GTAGCTTTTGCTTGTGTTGAAGGTATATTCTTTTCAGGTGCTTTCTGTGCTATCTTTTGG 131923 | || ||||| |||||||||||||| || || ||||| ||||| |||||||||||| Sbjct 1106424 ATTGCCTTTGCATGTGTTGAAGGTATCTTTTTCTCAGGCTCTTTCGCCGCTATCTTTTGG 1106365 Query 131924 CTTAAGAAGCGTGGATTGATGCCTGGACTCTCATTGTCCAATCAATTCATCTCGAGAGAT 131983 ||||| |||||||| ||||||| || | | || || || || | ||||| ||||| Sbjct 1106364 CTTAAAAAGCGTGGCCTGATGCCAGGTTTAACTTTCTCTAACGAACTTATCTCTCGAGAT 1106305 Query 131984 GAAGCATTGCATACTGAATTTGCTATATTAATCTATAGAAAATTTGCTGATAAACTTGAT 132043 |||| ||| ||| ||| ||||| || | | || | | ||| | | | || | Sbjct 1106304 GAAGGATTACATTGTGATTTTGCCTGTTTGTTATTTAAATATGTTGTTAAAAGACCGAGT 1106245 Query 132044 GAAAATAATATTAAACAACTTATAAGCGAAGCAGTTGATATCGAGAAGGAGTTTATTACA 132103 ||||| | |||| || || | | | || || || || |||||| || | ||| | || Sbjct 1106244 GAAAAAATTATTCAAGAAATAGTGCGAGATGCTGTGGAAATCGAGCAGAAATTTTTAACC 1106185 Query 132104 GAAGCTTTGCC 132114 || || ||||| Sbjct 1106184 GAGGCATTGCC 1106174 >seq453 Length=2394413 Score = 114 bits (126), Expect = 3e-20 Identities = 212/311 (68%), Gaps = 0/311 (0%) Strand=Plus/Minus Query 131804 AAAGCAGAATGGGCTATTAAATGGATTCAAGATGATTCCGCTAATTTTTCTACAAGACTT 131863 || || |||||||| || || |||| | | || || | |||| | |||| | Sbjct 11936 AAGGCTGAATGGGCAATAAACTGGACTGCAAATCCATCAGTCTCTTTTGCCGAAAGATTG 11877 Query 131864 GTAGCTTTTGCTTGTGTTGAAGGTATATTCTTTTCAGGTGCTTTCTGTGCTATCTTTTGG 131923 | || ||||| |||||||||||||| || || ||||| ||||| |||||||||||| Sbjct 11876 ATTGCCTTTGCATGTGTTGAAGGTATCTTTTTCTCAGGCTCTTTCGCCGCTATCTTTTGG 11817 Query 131924 CTTAAGAAGCGTGGATTGATGCCTGGACTCTCATTGTCCAATCAATTCATCTCGAGAGAT 131983 ||||| |||||||| ||||||| || | | || || || || | ||||| ||||| Sbjct 11816 CTTAAAAAGCGTGGCCTGATGCCAGGTTTAACTTTCTCTAACGAACTTATCTCTCGAGAT 11757 Query 131984 GAAGCATTGCATACTGAATTTGCTATATTAATCTATAGAAAATTTGCTGATAAACTTGAT 132043 |||| ||| ||| ||| ||||| || | | || | | ||| | | | || | Sbjct 11756 GAAGGATTACATTGTGATTTTGCCTGTTTGTTATTTAAATATGTTGTTAAAAGACCGAGT 11697 Query 132044 GAAAATAATATTAAACAACTTATAAGCGAAGCAGTTGATATCGAGAAGGAGTTTATTACA 132103 ||||| | |||| || || | | | || || || || |||||| || | ||| | || Sbjct 11696 GAAAAAATTATTCAAGAAATAGTGCGAGATGCTGTGGAAATCGAGCAGAAATTTTTAACC 11637 Query 132104 GAAGCTTTGCC 132114 || || ||||| Sbjct 11636 GAGGCATTGCC 11626 Score = 104 bits (114), Expect = 6e-17 Identities = 156/221 (71%), Gaps = 3/221 (1%) Strand=Plus/Minus Query 304883 AATTTAC---AATATCATATTGCAACATTAATGGATAATGAAATTGCTGGAATTATGCAG 304939 ||||||| |||| ||| |||| || | || || |||||| || ||||||| | | Sbjct 1543260 AATTTACTTCAATACCATGTTGCTACGCTTATTGACAATGAACTTCCTGGAATACCTCGG 1543201 Query 304940 GCATCTCAAAGATCTGGCAGACCTTTAAAGGGTATTAGGCAACGCATTAAAGGTAAAGAG 304999 || |||| |||||| || || || || || | |||| | | ||| ||||| Sbjct 1543200 GCTATGCAAAAATCTGGTAGGCCATTGAAATCAATCAAGCAAAGATTAAAATCCAAAGAA 1543141 Query 305000 GGTCGTATTCGAGGTAATCTAATGGGAAAACGTGTTGATTTTAGTGCAAGAAGTGTAATC 305059 ||||||||| |||| ||| ||||||| |||||||||||||| ||| | | |||||| Sbjct 1543140 GGTCGTATTAGAGGAAATTTAATGGGTAAACGTGTTGATTTCTCTGCTCGTACTGTAATT 1543081 Query 305060 ACACCTGATTCTCAAATTAGTCTTCATGAATTAGGAGTTCC 305100 ||||||||| | | |||| | ||||| | || ||||| Sbjct 1543080 ACACCTGATCCCAATCTTAGAATCGATGAAGTCGGTGTTCC 1543040 >seq448 Length=3678511 Score = 98.7 bits (108), Expect = 2e-15 Identities = 301/452 (67%), Gaps = 24/452 (5%) Strand=Plus/Minus Query 279854 CGTTCTATTCC-TCATTTAATGGATGGTTTGAAACCTTCACAGCGTAAGATTATATTCAG 279912 || || ||||| ||| | ||||||||| || |||||| || | ||| || | || | Sbjct 134311 CGATCGATTCCATCAGT-AATGGATGGATTCAAACCTGGCCAAAGAAAGGTTTTGTTTAC 134253 Query 279913 TTGTTTCAAAAGAAAATTGGTAAAGGAAATTCGTGTTGCTCAGTTAGCAGGTTATGTT-- 279970 ||||||||| |||| ||| || |||| | || ||||||||||| ||| ||| Sbjct 134252 ATGTTTCAAACGAAATTTGAAGAATGAAACTAAAGTAGCTCAGTTAGCTGGTACCGTTGG 134193 Query 279971 -TCAGAACATGCAGGTTATCATCACGGTGAAGCGTCTCTTCAAG-GTGCTATTGTAGGTC 280028 || ||| ||| || ||||||||||||| |||| || | | | | ||||| || Sbjct 134192 CTCCGAA---TCAGCATACCATCACGGTGAAGTGTCT-TTGATGTCTACAATTGTCAGTT 134137 Query 280029 TTGCCCAAGATTTT-ATGGCTTCAAACAACTTAAATC---TGCTTTCACCAAATGGTCAA 280084 | || ||||||||| |||| | |||||| |||||| ||||| ||| ||||||| Sbjct 134136 TGGCTCAAGATTTTGTTGGCAGC-AACAACATAAATCTATTGCTT---CCACTTGGTCAA 134081 Query 280085 TTTGGTTCTCGTATTCACAATGGAAAAGATCATGGTAGTGCTCGTTACA--TACA-TACA 280141 || || || | | || ||| |||||| | ||||||||||| | | || | | Sbjct 134080 TTCGGGACTAGATTGCAGGGTGGTAAAGATGCCGCCAGTGCTCGTTATATTTTCACCAAA 134021 Query 280142 TGTCTTTCAGATATTACAAACAAGTTATTTATCAATTCTGATAATGCTTCATTAGAGTGG 280201 | | || | || ||| | ||||| ||| | ||| | ||| | | | | Sbjct 134020 TTGAGTCCACTTGCTAGAAAAA---TATTTTCCAAGTTAGATGAACCTTTACTCCATTAT 133964 Query 280202 CTAGAGGATGATGGTCTTGCTATTGAACCAACATATTATGCTCCAATTATCCCTATGATT 280261 ||| | |||||| || |||||||| |||||||| || || |||| ||| | Sbjct 133963 CTATACGATGATAATCAACGAGTTGAACCAGAATATTATGTCCCTATACTCCCAATGGTG 133904 Query 280262 CTTGTTAATGGTGCTCAAGGAATTGGAACAGG 280293 | || ||||| ||| | ||||||||||| || Sbjct 133903 TTGGTAAATGGAGCTGACGGAATTGGAACCGG 133872 Score = 93.3 bits (102), Expect = 1e-13 Identities = 300/452 (66%), Gaps = 24/452 (5%) Strand=Plus/Plus Query 279854 CGTTCTATTCC-TCATTTAATGGATGGTTTGAAACCTTCACAGCGTAAGATTATATTCAG 279912 || || ||||| ||| | ||||||||| || |||||| || | || || | || | Sbjct 51308 CGATCGATTCCATCAGT-AATGGATGGATTCAAACCTGGCCAAAGAAAAGTTTTGTTTAC 51366 Query 279913 TTGTTTCAAAAGAAAATTGGTAAAGGAAATTCGTGTTGCTCAGTTAGCAGGT---TATGT 279969 |||||||| |||| ||| || |||| | || ||||||||||||||| || Sbjct 51367 ATGTTTCAAGCGAAATTTGAAGAATGAAACTAAAGTAGCTCAGTTAGCAGGTACCGTTGG 51426 Query 279970 TTCAGAACATGCAGGTTATCATCACGGTGAAGCGTCTCTTCAAG-GTGCTATTGTAGGTC 280028 ||| ||| ||| || ||||||||||||| |||| || | | | | ||||| || Sbjct 51427 TTCGGAA---TCAGCATACCATCACGGTGAAGTGTCT-TTGATGTCTACAATTGTCAGTT 51482 Query 280029 TTGCCCAAGATTTT-ATGGCTTCAAACAACTTAAATC---TGCTTTCACCAAATGGTCAA 280084 | || ||||||||| |||| | |||||| |||||| ||||| ||| ||||||| Sbjct 51483 TGGCTCAAGATTTTGTTGGCAGC-AACAACATAAATCTATTGCTT---CCACTTGGTCAA 51538 Query 280085 TTTGGTTCTCGTATTCACAATGGAAAAGATCATGGTAGTGCTCGTTACA--TACA-TACA 280141 || || || | | || ||| |||||| || |||||||| || | | || | | Sbjct 51539 TTCGGGACTAGATTGCAGGGTGGTAAAGATGCTGCCAGTGCTCGCTATATTTTCACCAAA 51598 Query 280142 TGTCTTTCAGATATTACAAACAAGTTATTTATCAATTCTGATAATGCTTCATTAGAGTGG 280201 | | || | || ||| | ||||| ||| | ||| | ||| | | | | Sbjct 51599 TTGAGTCCACTTGCTAGAAAAA---TATTTTCCAAGTTAGATGAACCTTTACTCCATTAT 51655 Query 280202 CTAGAGGATGATGGTCTTGCTATTGAACCAACATATTATGCTCCAATTATCCCTATGATT 280261 ||| | |||||| || |||||||| |||||||| || || |||| ||| | Sbjct 51656 CTATACGATGATAATCAACGAGTTGAACCAGAATATTATGTCCCTATACTCCCAATGGTG 51715 Query 280262 CTTGTTAATGGTGCTCAAGGAATTGGAACAGG 280293 | || ||||| ||| | ||||||||||| || Sbjct 51716 TTGGTAAATGGAGCTGACGGAATTGGAACCGG 51747 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1186803052929001