Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tetranychus_20urticae_20[refseq_20GCF_5F000239435.1_202011-12-20] 641 sequences; 90,828,597 total letters Query= NC_025412.1 Length=369360 Score E Sequences producing significant alignments: (Bits) Value seq444 95.1 3e-14 >seq444 Length=5217058 Score = 95.1 bits (104), Expect = 3e-14 Identities = 151/211 (72%), Gaps = 8/211 (4%) Strand=Plus/Minus Query 206184 CAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATC 206243 ||| || || || |||||||| ||||| | || || ||| || ||||| | ||| Sbjct 3542589 CAAGACTCTTACTGGAAAAACCATCACCCTTGAGGTTGAACCATCGGACACTATTGAAAA 3542530 Query 206244 AGT-AAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA-AGACTT--A 206299 || ||||| || ||| ||||| || ||||| || || || |||| || || | Sbjct 3542529 TGTTAAAGCCAA-GATCCAAGACAAGGAAGGTATCCCACCCGA---TCAACAGCGTTTGA 3542474 Query 206300 TCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAG 206359 ||||||| || || ||| | ||||||||| | || || |||||||||| | || |||| Sbjct 3542473 TCTTCGCTGGTAAACAGCTTGAAGATGGACGTACCCTGAGCGATTACAACATTCAAAAAG 3542414 Query 206360 AGTCTACTCTTCACCTTGTTTTGAGACTTCG 206390 ||||||| |||||| | || || ||||||| Sbjct 3542413 AGTCTACCCTTCACTTGGTCTTACGACTTCG 3542383 Score = 86.0 bits (94), Expect = 1e-11 Identities = 124/175 (71%), Gaps = 0/175 (0%) Strand=Plus/Minus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 ||||| ||||| |||||||| || ||||||||||| ||| ||| || || | ||| Sbjct 3542360 AAAACCCTCACTGGAAAAACCATTACTTTGGAAGTTGAACCTTCCGATACCATTGAAAAC 3542301 Query 206245 GTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTC 206304 || ||| || || || || || ||||| ||| || ||| ||| | | |||||| Sbjct 3542300 GTCAAGGCTAAAATCCAGGACAAGGAAGGTATTCCCCCCGACCAACAACGTTTGATCTTC 3542241 Query 206305 GCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAG 206359 || ||||| || | ||||||||| | || || | ||||| || |||| |||| Sbjct 3542240 GCTGGAAAACAACTCGAAGATGGACGTACATTATCTGATTATAATATCCAAAAAG 3542186 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1181811093927361