Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Tetranychus_20urticae_20[refseq_20GCF_5F000239435.1_202011-12-20]
641 sequences; 90,828,597 total letters
Query= NC_025412.1
Length=369360
Score E
Sequences producing significant alignments: (Bits) Value
seq444 95.1 3e-14
>seq444
Length=5217058
Score = 95.1 bits (104), Expect = 3e-14
Identities = 151/211 (72%), Gaps = 8/211 (4%)
Strand=Plus/Minus
Query 206184 CAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATC 206243
||| || || || |||||||| ||||| | || || ||| || ||||| | |||
Sbjct 3542589 CAAGACTCTTACTGGAAAAACCATCACCCTTGAGGTTGAACCATCGGACACTATTGAAAA 3542530
Query 206244 AGT-AAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA-AGACTT--A 206299
|| ||||| || ||| ||||| || ||||| || || || |||| || || |
Sbjct 3542529 TGTTAAAGCCAA-GATCCAAGACAAGGAAGGTATCCCACCCGA---TCAACAGCGTTTGA 3542474
Query 206300 TCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAG 206359
||||||| || || ||| | ||||||||| | || || |||||||||| | || ||||
Sbjct 3542473 TCTTCGCTGGTAAACAGCTTGAAGATGGACGTACCCTGAGCGATTACAACATTCAAAAAG 3542414
Query 206360 AGTCTACTCTTCACCTTGTTTTGAGACTTCG 206390
||||||| |||||| | || || |||||||
Sbjct 3542413 AGTCTACCCTTCACTTGGTCTTACGACTTCG 3542383
Score = 86.0 bits (94), Expect = 1e-11
Identities = 124/175 (71%), Gaps = 0/175 (0%)
Strand=Plus/Minus
Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244
||||| ||||| |||||||| || ||||||||||| ||| ||| || || | |||
Sbjct 3542360 AAAACCCTCACTGGAAAAACCATTACTTTGGAAGTTGAACCTTCCGATACCATTGAAAAC 3542301
Query 206245 GTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTC 206304
|| ||| || || || || || ||||| ||| || ||| ||| | | ||||||
Sbjct 3542300 GTCAAGGCTAAAATCCAGGACAAGGAAGGTATTCCCCCCGACCAACAACGTTTGATCTTC 3542241
Query 206305 GCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAG 206359
|| ||||| || | ||||||||| | || || | ||||| || |||| ||||
Sbjct 3542240 GCTGGAAAACAACTCGAAGATGGACGTACATTATCTGATTATAATATCCAAAAAG 3542186
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1181811093927361
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |