Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tetranychus_20urticae_20[refseq_20GCF_5F000239435.1_202011-12-20] 641 sequences; 90,828,597 total letters Query= NC_025960.1 Length=148981 Score E Sequences producing significant alignments: (Bits) Value seq444 131 2e-25 >seq444 Length=5217058 Score = 131 bits (144), Expect = 2e-25 Identities = 159/217 (73%), Gaps = 0/217 (0%) Strand=Plus/Plus Query 131909 CGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAA 131968 || || ||||| || | | | |||||||||||||||||||| ||||||| |||||| | Sbjct 3542389 CGTAAGACCAAGTGAAGGGTAGACTCTTTTTGAATGTTGTAATCGCTCAGGGTACGTCCA 3542448 Query 131969 TCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTA 132028 ||||| ||||||||||| | |||| | |||||||||||| || || || ||||| || Sbjct 3542449 TCTTCAAGCTGTTTACCAGCGAAGATCAAACGCTGTTGATCGGGTGGGATACCTTCCTTG 3542508 Query 132029 TCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGC 132088 || || || ||| | | ||| | ||| || | || || || || | || | Sbjct 3542509 TCTTGGATCTTGGCTTTAACATTTTCAATAGTGTCCGATGGTTCAACCTCAAGGGTGATG 3542568 Query 132089 GTTTTACCAGTCAGAGTTTTTATGAAAATCTGCATGA 132125 ||||| ||||| ||||| || | |||||| ||||||| Sbjct 3542569 GTTTTTCCAGTAAGAGTCTTGACGAAAATTTGCATGA 3542605 Score = 118 bits (130), Expect = 1e-21 Identities = 155/215 (72%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 131909 CGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAA 131968 ||||| ||||| || | | | || ||||||||||| || || || || | ||||| Sbjct 3541813 CGCAAGACCAAGTGAAGGGTAGATTCTTTTTGAATATTATAATCACTGAGAGTACGACCG 3541872 Query 131969 TCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTA 132028 || |||||||||||||| | |||| | ||| ||||| || || || || |||||||| Sbjct 3541873 TCCTCGAGCTGTTTACCAGCGAAGATCAAACGTTGTTGGTCAGGTGGGATACCTTCTTTG 3541932 Query 132029 TCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGC 132088 || ||||| ||||| | ||| | |||||| | || || || || | || | Sbjct 3541933 TCTTGGATTTTGGCTTTCACGTTTTCAATAGTATCAGAAGGTTCAACCTCAAGTGTAATG 3541992 Query 132089 GTTTTACCAGTCAGAGTTTTTATGAAAATCTGCAT 132123 || |||||||| |||||||||| |||||| ||||| Sbjct 3541993 GTCTTACCAGTAAGAGTTTTTACGAAAATTTGCAT 3542027 Score = 113 bits (124), Expect = 4e-20 Identities = 154/215 (72%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 131909 CGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAA 131968 || || || ||||||| |||| ||||| |||||||||||||| | ||| || | Sbjct 3541585 CGTAATACTAAATGTAAAGTTGATTCTTTCTGAATGTTGTAGTCAGAAAGGGTTCGACCA 3541644 Query 131969 TCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTA 132028 || || ||||||||||| | |||| |||||||||||||| || || || ||||| || Sbjct 3541645 TCCTCAAGCTGTTTACCAGCGAAGATGAGACGCTGTTGATCAGGTGGGATTCCTTCCTTG 3541704 Query 132029 TCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGC 132088 || ||||| || | | ||| | || |||| || || ||||| | || | Sbjct 3541705 TCTTGGATTTTAGCCTTGACATTTTCAATGGTGTCGGAAGGTTCAACTTCCAAGGTGATG 3541764 Query 132089 GTTTTACCAGTCAGAGTTTTTATGAAAATCTGCAT 132123 ||||||||||| || ||||| | |||||| ||||| Sbjct 3541765 GTTTTACCAGTGAGGGTTTTGACGAAAATTTGCAT 3541799 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 476607381152760