Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tetranychus_20urticae_20[refseq_20GCF_5F000239435.1_202011-12-20] 641 sequences; 90,828,597 total letters Query= NC_026268.1 Length=139132 Score E Sequences producing significant alignments: (Bits) Value seq442 187 2e-42 seq444 89.7 5e-13 >seq442 Length=7801961 Score = 187 bits (206), Expect = 2e-42 Identities = 914/1431 (64%), Gaps = 50/1431 (3%) Strand=Plus/Plus Query 136639 ACGGTGAATTGGATTGTATTCGCGGCAGGTTTAGTTCTCAGATAGTACATGCCCGTCTTT 136698 || || |||||||| | ||| || ||||||||| ||| | ||||||||||| ||||| Sbjct 3251602 ACAGTAAATTGGATAGCATTTGCAGCAGGTTTACTTCGTAAGTAGTACATGCCTGTCTTA 3251661 Query 136699 AAACCCTTCTCCCAGGAATAATTATGTATAGATGACAAAATTTTATAGCT-CGGATCGGC 136757 | || ||||||| ||| ||| || || | || || |||| | || | | Sbjct 3251662 AGCCCAAGCTCCCAGCCATAGAAATGCATCGAGGTCA-----TTTTAGCAACAGAAGGTC 3251716 Query 136758 CACGAAAAG----ATTTAGCGATTGGCTCTGATCGATGTAAGGTCCGCGGTCTGCGGCCA 136813 |||| ||||| ||||| || ||||| || ||| ||| || || || |||| Sbjct 3251717 TTTCAAAATGAATATTTAAAGATTGACTTTGATCAATAAAAGCTCCACGTTCAGCAGCCA 3251776 Query 136814 TGTTCAATAGTACTTTTT-GCTTAATTTCCCAAGCGGTTTTAAAGAGCTCCTTGACATTG 136872 | ||| | | || ||||| | |||||||||| | ||| | | | | ||| | || Sbjct 3251777 T-TTCCAGAATATTTTTTTGAGGAATTTCCCAAACAGTTCGATACAATTGCTTAATATCC 3251835 Query 136873 GGCGGAATTTCATCGATATTCTGTACAGATCCGTTGTTTTTGATGATTT--TCA-TCATG 136929 || || | || ||| || | || || ||| | || || | || ||||| Sbjct 3251836 TCTGGGATACCTTCAATAGCTTGAATGGAGCCTCTGTGATAAATAATCTGTTCTCTCATG 3251895 Query 136930 AGATCAGTCGAGTATACGTTGCTCTCTATGAGTTTA----TCGACGAGATGCTGATTTAC 136985 ||| || | | ||| ||| || ||| | | ||| ||||| || || || Sbjct 3251896 TCTTCATTCCA----AAGTT---CTCGATCAGTCAAATCTTTGACAAGATGGTGGTTAAC 3251948 Query 136986 TACTTGATATTCGCCCGATAGCACTCTGCGTACGTACAGAT--TACTAGTGAACGGCTCG 137043 ||||||| |||| || || || |||| || ||| |||| |||| || | || || Sbjct 3251949 TACTTGAAATTCACCAGAAAGAACTCGTCGA--GTATAGATGTTACTTGTATATGGTTCA 3252006 Query 137044 AACGATTCGTTGTTACCCAAAATCTGTGCAGTCGTCGCTGTCGGCATGTAAGCGATCAAC 137103 | ||||||||||| ||||||||||| ||||| | ||||| |||||| || | ||| Sbjct 3252007 ATAGATTCGTTGTTCCCCAAAATCTGAGCAGTTGATGCTGTAGGCATGGGCGCTAATAAC 3252066 Query 137104 AATGAATTCCGTAAACCGTGTACGGCCAATTGTTGCTTGAGCTCTTTCCAGTTCCACAGA 137163 | || || | ||| ||| || | || ||| |||||| |||||| ||||||| Sbjct 3252067 AGACTGTTTCGAAGACCATGTTTAGCAATTTTACTCTTCAGCTCTGTCCAGTCCCACAGA 3252126 Query 137164 TTGTTCGATTGGGTTATATTCCACAAATCAAACTGCAAAAGTCCGCGACTTGCAGGACTT 137223 || ||| | |||| | ||||| |||| | ||||||| || | || ||| | Sbjct 3252127 ---TTAGATGGTGTTACACCCCACATATCATATTGCAAAATCCCTTTAGAAGCGGGAGAT 3252183 Query 137224 TCTGCATAAGAATCATATGTTCCGTGCAGTTTCGCCAGTTCAATACTCTGGACTAGTGCG 137283 ||||||||| || || | |||| | || || || ||| ||| | || || Sbjct 3252184 CCTGCATAAGTTTCGTAAGGTCCGAGTTCTTCAGCGAGCTCACAACTTGCTTCGAGAGCT 3252243 Query 137284 CCATAGTAAATAGTTTCGGAGATTTTTCTATTCAATTCTCTAGCTTCTTGGCTGTCGTAG 137343 ||||| || || || || |||||| |||||||| | ||||||| ||||||| | Sbjct 3252244 CCATAATAGATTGTCTCAAAGATTTGGACATTCAATTTACGAGCTTCTGGGCTGTCAAAT 3252303 Query 137344 GGCATATC-CAATATAGCGAAAGCATCTGCAAGTCCTTGAATACCGATACCGATAGGTCT 137402 || ||||| || || | || || ||||| | ||||||| || | || ||||||| Sbjct 3252304 GG-ATATCTCATTAAAAGAAATGCGTCTGCTAAGCCTTGAACTCCTAAGCCAATAGGTCG 3252362 Query 137403 GTGTTTAAAATTTGATATTTGAGCGCTAAC--AAGCGGATAAAAGTTTGCGTCTATAATT 137460 | || ||||| || ||| ||| | || ||||||||||| || |||||| Sbjct 3252363 ATTCTTTTTGTTTGA-ATAAGAG-GCTTCCTTTAGAGGATAAAAGTTGATCTCAATAATT 3252420 Query 137461 CTATTGAGATTGTTAGTAACGACTCTGGACACTTTGTAGAGCAATTCGAAATCGAAGCTT 137520 | || | ||| || || || ||| |||| | ||| | | ||||| || || Sbjct 3252421 TTGTTTAAATTTCGTGTGACCGCTTTGGTAACTTCTTTGAGTCTTGCAAAATCAAA--TT 3252478 Query 137521 TTAGACTGTTTGTTAGCAAAATTATTGACGGCAATAGAGGCTAAGTTGCATACGGCCGTT 137580 || | | | | || |||| || || | ||| |||||||| | || || || || | Sbjct 3252479 TTTG-TTCCTCGGTAACAAATTTTTTCAAGGCTATAGAGGCAAGATTACAAACAGCAACT 3252537 Query 137581 TCTGTATTGTCGCTGTATTGTACAATTTCGGCGCAAAGATT---GCTGTTTCGGATCACT 137637 || | | | || |||| |||||||| | ||| ||||| | || ||| | Sbjct 3252538 TCATCAGGGGCACTATATTCAACAATTTCAGTGCACAGATTTGAACACTT---GATGGTT 3252594 Query 137638 CCCAAATTCTTTTGATTGTTTTTCTCGTTGACGTGATCTTTATATATCATATACGGAGTT 137697 || | ||| || |||||| || || || ||||||||||| | |||||||||| Sbjct 3252595 CCAAGATTTTTCTGATTGGACTTTTCATTACAATGATCTTTATAAAGCATATACGGAACA 3252654 Query 137698 CCGGTTTCGACTTGAGTCTCAACAATTTTTCTGTGAAGATCCAACGCCATAATTTGTTCT 137757 || ||||| | || | |||| ||| | |||| | || | ||||| | Sbjct 3252655 CCAGTTTCCATCTGGGCATCAATGATTGCTTGCCAAAGAGCTCGAGCTTTTATTTGCTGA 3252714 Query 137758 CTAAACTTGCCTTGAGCTTCAAAACTTTCGTATAGCCGTTTAAATTTTTCGCCCATAACA 137817 | | | || ||||| | | | || ||| || |||| || |||||| Sbjct 3252715 TTGTATCTTTTTTCTTCTTCATATTTAACATAAAGCTTATTGAATTCATC-TCCATAAAC 3252773 Query 137818 ATCG-TTAGACCCGGACACTCGTCGGGACACATCAACGACCATTTTCCTCCCGTCCTAAC 137876 ||| |||||| ||||| | || |||||||| | ||| || | | | |||| Sbjct 3252774 TTCGAATAGACCAGGACATTTGTGTGGACACATAAGACTCCACATTTCATCTTTTTTAAC 3252833 Query 137877 CCTTTCCATGAACAGAGAAGGCGTCCATATAGCAAAAAGAAGGTCGCGAGCCTTCATATC 137936 | ||||| || ||| |||| ||| | ||| |||| | || ||||| |||| || Sbjct 3252834 TCGCTCCATAAAAAGATTAGGCACCCAAAGAGCTAAAAACAAATCTCGAGCTCTCATCTC 3252893 Query 137937 TTCGGCGCCCATATTGCGTTTTAAATCCaaaaaagtaaaaaTATCAGCATGCCAAGGCTC 137996 ||| || | || | |||| | ||| ||| | |||||||||||||||||| Sbjct 3252894 TTCTTTACCAGTGTTTTTTCTTAAGCATAGGAAATCAAAGACATCAGCATGCCAAGGCTC 3252953 Query 137997 GATATAGACGGCCATAGCTCCTTTTCTTTTACCGCCTTGATCCACATGACG 138047 ||||| | || ||||||| || |||||| ||||| | |||| ||| Sbjct 3252954 AATATAAATAGCATAAGCTCCTGGTCGTTTACCCCCTTGGTTGACATAACG 3253004 >seq444 Length=5217058 Score = 89.7 bits (98), Expect = 5e-13 Identities = 147/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 25175 ATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAAC 25234 |||||| | || |||||||| | || || || | || || | || || ||| | Sbjct 3542027 ATGCAAATTTTCGTAAAAACTCTTACTGGTAAGACCATTACACTTGAGGTTGAACCTTCT 3541968 Query 25235 GATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCAG 25294 |||||||| || | || ||| ||||| || ||||| ||||| || || || || Sbjct 3541967 GATACTATTGAAAACGTGAAAGCCAAAATCCAAGACAAAGAAGGTATCCCACCTGACCAA 3541908 Query 25295 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGATTACAAT 25354 ||| | | || | || || ||||| ||||| || | | | | | |||| ||||| ||| Sbjct 3541907 CAACGTTTGATCTTCGCTGGTAAACAGCTCGAGGACGGTCGTACTCTCAGTGATTATAAT 3541848 Query 25355 ATTCAAAAAGAATCCACCATTCATTTAGTGTT 25386 |||||||||||||| ||| |||| || || || Sbjct 3541847 ATTCAAAAAGAATCTACCCTTCACTTGGTCTT 3541816 Score = 86.0 bits (94), Expect = 6e-12 Identities = 162/235 (69%), Gaps = 5/235 (2%) Strand=Plus/Minus Query 25160 TTTCAATTAAA---CAACATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACG 25216 |||||||| | || ||||||| | || || || || | || |||||| | ||||| Sbjct 3542621 TTTCAATTGATTTTCATCATGCAAATTTTCGTCAAGACTCTTACTGGAAAAACCATCACC 3542562 Query 25217 ATCGAAGTCGAAGCCAACG-ATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGA 25275 | || || ||| ||| || | ||||| || | || ||| || || || || || Sbjct 3542561 CTTGAGGTTGAA-CCATCGGACACTATTGAAAATGTTAAAGCCAAGATCCAAGACAAGGA 3542503 Query 25276 GGGTATACCGCCCGATCAGCAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAG 25335 ||||| || |||||||| || | | || | || || ||||| || ||||||| | Sbjct 3542502 AGGTATCCCACCCGATCAACAGCGTTTGATCTTCGCTGGTAAACAGCTTGAAGATGGACG 3542443 Query 25336 AAATGTCAGCGATTACAATATTCAAAAAGAATCCACCATTCATTTAGTGTTAAGA 25390 | | ||||||||||| ||||||||||| || ||| |||| || || ||| || Sbjct 3542442 TACCCTGAGCGATTACAACATTCAAAAAGAGTCTACCCTTCACTTGGTCTTACGA 3542388 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445090833681120