Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Tetranychus_20urticae_20[refseq_20GCF_5F000239435.1_202011-12-20]
641 sequences; 90,828,597 total letters
Query= NC_026268.1
Length=139132
Score E
Sequences producing significant alignments: (Bits) Value
seq442 187 2e-42
seq444 89.7 5e-13
>seq442
Length=7801961
Score = 187 bits (206), Expect = 2e-42
Identities = 914/1431 (64%), Gaps = 50/1431 (3%)
Strand=Plus/Plus
Query 136639 ACGGTGAATTGGATTGTATTCGCGGCAGGTTTAGTTCTCAGATAGTACATGCCCGTCTTT 136698
|| || |||||||| | ||| || ||||||||| ||| | ||||||||||| |||||
Sbjct 3251602 ACAGTAAATTGGATAGCATTTGCAGCAGGTTTACTTCGTAAGTAGTACATGCCTGTCTTA 3251661
Query 136699 AAACCCTTCTCCCAGGAATAATTATGTATAGATGACAAAATTTTATAGCT-CGGATCGGC 136757
| || ||||||| ||| ||| || || | || || |||| | || | |
Sbjct 3251662 AGCCCAAGCTCCCAGCCATAGAAATGCATCGAGGTCA-----TTTTAGCAACAGAAGGTC 3251716
Query 136758 CACGAAAAG----ATTTAGCGATTGGCTCTGATCGATGTAAGGTCCGCGGTCTGCGGCCA 136813
|||| ||||| ||||| || ||||| || ||| ||| || || || ||||
Sbjct 3251717 TTTCAAAATGAATATTTAAAGATTGACTTTGATCAATAAAAGCTCCACGTTCAGCAGCCA 3251776
Query 136814 TGTTCAATAGTACTTTTT-GCTTAATTTCCCAAGCGGTTTTAAAGAGCTCCTTGACATTG 136872
| ||| | | || ||||| | |||||||||| | ||| | | | | ||| | ||
Sbjct 3251777 T-TTCCAGAATATTTTTTTGAGGAATTTCCCAAACAGTTCGATACAATTGCTTAATATCC 3251835
Query 136873 GGCGGAATTTCATCGATATTCTGTACAGATCCGTTGTTTTTGATGATTT--TCA-TCATG 136929
|| || | || ||| || | || || ||| | || || | || |||||
Sbjct 3251836 TCTGGGATACCTTCAATAGCTTGAATGGAGCCTCTGTGATAAATAATCTGTTCTCTCATG 3251895
Query 136930 AGATCAGTCGAGTATACGTTGCTCTCTATGAGTTTA----TCGACGAGATGCTGATTTAC 136985
||| || | | ||| ||| || ||| | | ||| ||||| || || ||
Sbjct 3251896 TCTTCATTCCA----AAGTT---CTCGATCAGTCAAATCTTTGACAAGATGGTGGTTAAC 3251948
Query 136986 TACTTGATATTCGCCCGATAGCACTCTGCGTACGTACAGAT--TACTAGTGAACGGCTCG 137043
||||||| |||| || || || |||| || ||| |||| |||| || | || ||
Sbjct 3251949 TACTTGAAATTCACCAGAAAGAACTCGTCGA--GTATAGATGTTACTTGTATATGGTTCA 3252006
Query 137044 AACGATTCGTTGTTACCCAAAATCTGTGCAGTCGTCGCTGTCGGCATGTAAGCGATCAAC 137103
| ||||||||||| ||||||||||| ||||| | ||||| |||||| || | |||
Sbjct 3252007 ATAGATTCGTTGTTCCCCAAAATCTGAGCAGTTGATGCTGTAGGCATGGGCGCTAATAAC 3252066
Query 137104 AATGAATTCCGTAAACCGTGTACGGCCAATTGTTGCTTGAGCTCTTTCCAGTTCCACAGA 137163
| || || | ||| ||| || | || ||| |||||| |||||| |||||||
Sbjct 3252067 AGACTGTTTCGAAGACCATGTTTAGCAATTTTACTCTTCAGCTCTGTCCAGTCCCACAGA 3252126
Query 137164 TTGTTCGATTGGGTTATATTCCACAAATCAAACTGCAAAAGTCCGCGACTTGCAGGACTT 137223
|| ||| | |||| | ||||| |||| | ||||||| || | || ||| |
Sbjct 3252127 ---TTAGATGGTGTTACACCCCACATATCATATTGCAAAATCCCTTTAGAAGCGGGAGAT 3252183
Query 137224 TCTGCATAAGAATCATATGTTCCGTGCAGTTTCGCCAGTTCAATACTCTGGACTAGTGCG 137283
||||||||| || || | |||| | || || || ||| ||| | || ||
Sbjct 3252184 CCTGCATAAGTTTCGTAAGGTCCGAGTTCTTCAGCGAGCTCACAACTTGCTTCGAGAGCT 3252243
Query 137284 CCATAGTAAATAGTTTCGGAGATTTTTCTATTCAATTCTCTAGCTTCTTGGCTGTCGTAG 137343
||||| || || || || |||||| |||||||| | ||||||| ||||||| |
Sbjct 3252244 CCATAATAGATTGTCTCAAAGATTTGGACATTCAATTTACGAGCTTCTGGGCTGTCAAAT 3252303
Query 137344 GGCATATC-CAATATAGCGAAAGCATCTGCAAGTCCTTGAATACCGATACCGATAGGTCT 137402
|| ||||| || || | || || ||||| | ||||||| || | || |||||||
Sbjct 3252304 GG-ATATCTCATTAAAAGAAATGCGTCTGCTAAGCCTTGAACTCCTAAGCCAATAGGTCG 3252362
Query 137403 GTGTTTAAAATTTGATATTTGAGCGCTAAC--AAGCGGATAAAAGTTTGCGTCTATAATT 137460
| || ||||| || ||| ||| | || ||||||||||| || ||||||
Sbjct 3252363 ATTCTTTTTGTTTGA-ATAAGAG-GCTTCCTTTAGAGGATAAAAGTTGATCTCAATAATT 3252420
Query 137461 CTATTGAGATTGTTAGTAACGACTCTGGACACTTTGTAGAGCAATTCGAAATCGAAGCTT 137520
| || | ||| || || || ||| |||| | ||| | | ||||| || ||
Sbjct 3252421 TTGTTTAAATTTCGTGTGACCGCTTTGGTAACTTCTTTGAGTCTTGCAAAATCAAA--TT 3252478
Query 137521 TTAGACTGTTTGTTAGCAAAATTATTGACGGCAATAGAGGCTAAGTTGCATACGGCCGTT 137580
|| | | | | || |||| || || | ||| |||||||| | || || || || |
Sbjct 3252479 TTTG-TTCCTCGGTAACAAATTTTTTCAAGGCTATAGAGGCAAGATTACAAACAGCAACT 3252537
Query 137581 TCTGTATTGTCGCTGTATTGTACAATTTCGGCGCAAAGATT---GCTGTTTCGGATCACT 137637
|| | | | || |||| |||||||| | ||| ||||| | || ||| |
Sbjct 3252538 TCATCAGGGGCACTATATTCAACAATTTCAGTGCACAGATTTGAACACTT---GATGGTT 3252594
Query 137638 CCCAAATTCTTTTGATTGTTTTTCTCGTTGACGTGATCTTTATATATCATATACGGAGTT 137697
|| | ||| || |||||| || || || ||||||||||| | ||||||||||
Sbjct 3252595 CCAAGATTTTTCTGATTGGACTTTTCATTACAATGATCTTTATAAAGCATATACGGAACA 3252654
Query 137698 CCGGTTTCGACTTGAGTCTCAACAATTTTTCTGTGAAGATCCAACGCCATAATTTGTTCT 137757
|| ||||| | || | |||| ||| | |||| | || | ||||| |
Sbjct 3252655 CCAGTTTCCATCTGGGCATCAATGATTGCTTGCCAAAGAGCTCGAGCTTTTATTTGCTGA 3252714
Query 137758 CTAAACTTGCCTTGAGCTTCAAAACTTTCGTATAGCCGTTTAAATTTTTCGCCCATAACA 137817
| | | || ||||| | | | || ||| || |||| || ||||||
Sbjct 3252715 TTGTATCTTTTTTCTTCTTCATATTTAACATAAAGCTTATTGAATTCATC-TCCATAAAC 3252773
Query 137818 ATCG-TTAGACCCGGACACTCGTCGGGACACATCAACGACCATTTTCCTCCCGTCCTAAC 137876
||| |||||| ||||| | || |||||||| | ||| || | | | ||||
Sbjct 3252774 TTCGAATAGACCAGGACATTTGTGTGGACACATAAGACTCCACATTTCATCTTTTTTAAC 3252833
Query 137877 CCTTTCCATGAACAGAGAAGGCGTCCATATAGCAAAAAGAAGGTCGCGAGCCTTCATATC 137936
| ||||| || ||| |||| ||| | ||| |||| | || ||||| |||| ||
Sbjct 3252834 TCGCTCCATAAAAAGATTAGGCACCCAAAGAGCTAAAAACAAATCTCGAGCTCTCATCTC 3252893
Query 137937 TTCGGCGCCCATATTGCGTTTTAAATCCaaaaaagtaaaaaTATCAGCATGCCAAGGCTC 137996
||| || | || | |||| | ||| ||| | ||||||||||||||||||
Sbjct 3252894 TTCTTTACCAGTGTTTTTTCTTAAGCATAGGAAATCAAAGACATCAGCATGCCAAGGCTC 3252953
Query 137997 GATATAGACGGCCATAGCTCCTTTTCTTTTACCGCCTTGATCCACATGACG 138047
||||| | || ||||||| || |||||| ||||| | |||| |||
Sbjct 3252954 AATATAAATAGCATAAGCTCCTGGTCGTTTACCCCCTTGGTTGACATAACG 3253004
>seq444
Length=5217058
Score = 89.7 bits (98), Expect = 5e-13
Identities = 147/212 (69%), Gaps = 0/212 (0%)
Strand=Plus/Minus
Query 25175 ATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAAC 25234
|||||| | || |||||||| | || || || | || || | || || ||| |
Sbjct 3542027 ATGCAAATTTTCGTAAAAACTCTTACTGGTAAGACCATTACACTTGAGGTTGAACCTTCT 3541968
Query 25235 GATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCAG 25294
|||||||| || | || ||| ||||| || ||||| ||||| || || || ||
Sbjct 3541967 GATACTATTGAAAACGTGAAAGCCAAAATCCAAGACAAAGAAGGTATCCCACCTGACCAA 3541908
Query 25295 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGATTACAAT 25354
||| | | || | || || ||||| ||||| || | | | | | |||| ||||| |||
Sbjct 3541907 CAACGTTTGATCTTCGCTGGTAAACAGCTCGAGGACGGTCGTACTCTCAGTGATTATAAT 3541848
Query 25355 ATTCAAAAAGAATCCACCATTCATTTAGTGTT 25386
|||||||||||||| ||| |||| || || ||
Sbjct 3541847 ATTCAAAAAGAATCTACCCTTCACTTGGTCTT 3541816
Score = 86.0 bits (94), Expect = 6e-12
Identities = 162/235 (69%), Gaps = 5/235 (2%)
Strand=Plus/Minus
Query 25160 TTTCAATTAAA---CAACATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACG 25216
|||||||| | || ||||||| | || || || || | || |||||| | |||||
Sbjct 3542621 TTTCAATTGATTTTCATCATGCAAATTTTCGTCAAGACTCTTACTGGAAAAACCATCACC 3542562
Query 25217 ATCGAAGTCGAAGCCAACG-ATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGA 25275
| || || ||| ||| || | ||||| || | || ||| || || || || ||
Sbjct 3542561 CTTGAGGTTGAA-CCATCGGACACTATTGAAAATGTTAAAGCCAAGATCCAAGACAAGGA 3542503
Query 25276 GGGTATACCGCCCGATCAGCAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAG 25335
||||| || |||||||| || | | || | || || ||||| || ||||||| |
Sbjct 3542502 AGGTATCCCACCCGATCAACAGCGTTTGATCTTCGCTGGTAAACAGCTTGAAGATGGACG 3542443
Query 25336 AAATGTCAGCGATTACAATATTCAAAAAGAATCCACCATTCATTTAGTGTTAAGA 25390
| | ||||||||||| ||||||||||| || ||| |||| || || ||| ||
Sbjct 3542442 TACCCTGAGCGATTACAACATTCAAAAAGAGTCTACCCTTCACTTGGTCTTACGA 3542388
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 445090833681120
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |