Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tetranychus_20urticae_20[refseq_20GCF_5F000239435.1_202011-12-20] 641 sequences; 90,828,597 total letters Query= NC_026922.1 Length=157977 Score E Sequences producing significant alignments: (Bits) Value seq444 141 9e-29 >seq444 Length=5217058 Score = 141 bits (156), Expect = 9e-29 Identities = 165/220 (75%), Gaps = 2/220 (1%) Strand=Plus/Plus Query 134496 AGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGA 134555 |||||||| || | ||| || || ||||| |||||||| || || || | | || || Sbjct 3541810 AGTCGCAAGACCAAGTGAAGGGTAGATTCTTTTTGAATATTATAATCACTGAGAGTACGA 3541869 Query 134556 GAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCT 134615 ||| ||||||||||| || || || |||||||| || || || || || || |||||| Sbjct 3541870 CCGTCCTCGAGCTGTTTACCAGCGAAGATCAAACGTTGTTGGTCAGGTGGGATACCTTCT 3541929 Query 134616 TTTTCTTGAATTTTTTGTTTGACCGCGTCCAAT-GTGTCGGACGATTCCACGTCGAGAGT 134674 || ||||| ||||| ||| | || | |||| || || || | ||| || || || || Sbjct 3541930 TTGTCTTGGATTTTGGCTTTCA-CGTTTTCAATAGTATCAGAAGGTTCAACCTCAAGTGT 3541988 Query 134675 AATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCATT 134714 |||||| ||||| || | |||||| ||||||||||||||| Sbjct 3541989 AATGGTCTTACCAGTAAGAGTTTTTACGAAAATTTGCATT 3542028 Score = 132 bits (146), Expect = 5e-26 Identities = 160/218 (73%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 134496 AGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGA 134555 ||||| || || | ||| || || || || |||||||||||||| |||| | ||| | Sbjct 3542386 AGTCGTAAGACCAAGTGAAGGGTAGACTCTTTTTGAATGTTGTAATCGCTCAGGGTACGT 3542445 Query 134556 GAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCT 134615 || || |||||||| || || || ||||||||||| |||||||| || || ||||| Sbjct 3542446 CCATCTTCAAGCTGTTTACCAGCGAAGATCAAACGCTGTTGATCGGGTGGGATACCTTCC 3542505 Query 134616 TTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTA 134675 || ||||| || || ||| || || | ||||| || | ||| || || || || Sbjct 3542506 TTGTCTTGGATCTTGGCTTTAACATTTTCAATAGTGTCCGATGGTTCAACCTCAAGGGTG 3542565 Query 134676 ATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 |||||||| || || | ||| || |||||||||||||| Sbjct 3542566 ATGGTTTTTCCAGTAAGAGTCTTGACGAAAATTTGCAT 3542603 Score = 127 bits (140), Expect = 2e-24 Identities = 159/218 (73%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 134496 AGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGA 134555 ||||| || || | |||| || ||||| || |||||||||||||| || ||| || Sbjct 3541582 AGTCGTAATACTAAATGTAAAGTTGATTCTTTCTGAATGTTGTAGTCAGAAAGGGTTCGA 3541641 Query 134556 GAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCT 134615 || || |||||||| || || || || | |||||| ||||| || || || ||||| Sbjct 3541642 CCATCCTCAAGCTGTTTACCAGCGAAGATGAGACGCTGTTGATCAGGTGGGATTCCTTCC 3541701 Query 134616 TTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTA 134675 || ||||| ||||| ||||| || | |||||||| | ||| || || | || Sbjct 3541702 TTGTCTTGGATTTTAGCCTTGACATTTTCAATGGTGTCGGAAGGTTCAACTTCCAAGGTG 3541761 Query 134676 ATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 ||||||||||| || | ||||| |||||||||||||| Sbjct 3541762 ATGGTTTTACCAGTGAGGGTTTTGACGAAAATTTGCAT 3541799 Score = 107 bits (118), Expect = 2e-18 Identities = 119/156 (76%), Gaps = 2/156 (1%) Strand=Plus/Plus Query 134559 TCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTT 134618 || ||||| ||||| || || || |||||||| || || ||||| || || ||||| || Sbjct 3542221 TCTTCGAGTTGTTTTCCAGCGAAGATCAAACGTTGTTGGTCGGGGGGAATACCTTCCTTG 3542280 Query 134619 TCTTGAATTTTTTGTTTGACCGCGTCCAATG-TGTCGGACGATTCCACGTCGAGAGTAAT 134677 || || ||||| ||||| | | ||||| | ||||| | ||| || || | |||||| Sbjct 3542281 TCCTGGATTTTAGCCTTGAC-GTTTTCAATGGTATCGGAAGGTTCAACTTCCAAAGTAAT 3542339 Query 134678 GGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 |||||| || || | |||||||||||||||||||| Sbjct 3542340 GGTTTTTCCAGTGAGGGTTTTAACGAAAATTTGCAT 3542375 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 505394350495320