Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Tetranychus_20urticae_20[refseq_20GCF_5F000239435.1_202011-12-20]
641 sequences; 90,828,597 total letters
Query= NC_026922.1
Length=157977
Score E
Sequences producing significant alignments: (Bits) Value
seq444 141 9e-29
>seq444
Length=5217058
Score = 141 bits (156), Expect = 9e-29
Identities = 165/220 (75%), Gaps = 2/220 (1%)
Strand=Plus/Plus
Query 134496 AGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGA 134555
|||||||| || | ||| || || ||||| |||||||| || || || | | || ||
Sbjct 3541810 AGTCGCAAGACCAAGTGAAGGGTAGATTCTTTTTGAATATTATAATCACTGAGAGTACGA 3541869
Query 134556 GAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCT 134615
||| ||||||||||| || || || |||||||| || || || || || || ||||||
Sbjct 3541870 CCGTCCTCGAGCTGTTTACCAGCGAAGATCAAACGTTGTTGGTCAGGTGGGATACCTTCT 3541929
Query 134616 TTTTCTTGAATTTTTTGTTTGACCGCGTCCAAT-GTGTCGGACGATTCCACGTCGAGAGT 134674
|| ||||| ||||| ||| | || | |||| || || || | ||| || || || ||
Sbjct 3541930 TTGTCTTGGATTTTGGCTTTCA-CGTTTTCAATAGTATCAGAAGGTTCAACCTCAAGTGT 3541988
Query 134675 AATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCATT 134714
|||||| ||||| || | |||||| |||||||||||||||
Sbjct 3541989 AATGGTCTTACCAGTAAGAGTTTTTACGAAAATTTGCATT 3542028
Score = 132 bits (146), Expect = 5e-26
Identities = 160/218 (73%), Gaps = 0/218 (0%)
Strand=Plus/Plus
Query 134496 AGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGA 134555
||||| || || | ||| || || || || |||||||||||||| |||| | ||| |
Sbjct 3542386 AGTCGTAAGACCAAGTGAAGGGTAGACTCTTTTTGAATGTTGTAATCGCTCAGGGTACGT 3542445
Query 134556 GAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCT 134615
|| || |||||||| || || || ||||||||||| |||||||| || || |||||
Sbjct 3542446 CCATCTTCAAGCTGTTTACCAGCGAAGATCAAACGCTGTTGATCGGGTGGGATACCTTCC 3542505
Query 134616 TTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTA 134675
|| ||||| || || ||| || || | ||||| || | ||| || || || ||
Sbjct 3542506 TTGTCTTGGATCTTGGCTTTAACATTTTCAATAGTGTCCGATGGTTCAACCTCAAGGGTG 3542565
Query 134676 ATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713
|||||||| || || | ||| || ||||||||||||||
Sbjct 3542566 ATGGTTTTTCCAGTAAGAGTCTTGACGAAAATTTGCAT 3542603
Score = 127 bits (140), Expect = 2e-24
Identities = 159/218 (73%), Gaps = 0/218 (0%)
Strand=Plus/Plus
Query 134496 AGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGA 134555
||||| || || | |||| || ||||| || |||||||||||||| || ||| ||
Sbjct 3541582 AGTCGTAATACTAAATGTAAAGTTGATTCTTTCTGAATGTTGTAGTCAGAAAGGGTTCGA 3541641
Query 134556 GAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCT 134615
|| || |||||||| || || || || | |||||| ||||| || || || |||||
Sbjct 3541642 CCATCCTCAAGCTGTTTACCAGCGAAGATGAGACGCTGTTGATCAGGTGGGATTCCTTCC 3541701
Query 134616 TTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTA 134675
|| ||||| ||||| ||||| || | |||||||| | ||| || || | ||
Sbjct 3541702 TTGTCTTGGATTTTAGCCTTGACATTTTCAATGGTGTCGGAAGGTTCAACTTCCAAGGTG 3541761
Query 134676 ATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713
||||||||||| || | ||||| ||||||||||||||
Sbjct 3541762 ATGGTTTTACCAGTGAGGGTTTTGACGAAAATTTGCAT 3541799
Score = 107 bits (118), Expect = 2e-18
Identities = 119/156 (76%), Gaps = 2/156 (1%)
Strand=Plus/Plus
Query 134559 TCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTT 134618
|| ||||| ||||| || || || |||||||| || || ||||| || || ||||| ||
Sbjct 3542221 TCTTCGAGTTGTTTTCCAGCGAAGATCAAACGTTGTTGGTCGGGGGGAATACCTTCCTTG 3542280
Query 134619 TCTTGAATTTTTTGTTTGACCGCGTCCAATG-TGTCGGACGATTCCACGTCGAGAGTAAT 134677
|| || ||||| ||||| | | ||||| | ||||| | ||| || || | ||||||
Sbjct 3542281 TCCTGGATTTTAGCCTTGAC-GTTTTCAATGGTATCGGAAGGTTCAACTTCCAAAGTAAT 3542339
Query 134678 GGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713
|||||| || || | ||||||||||||||||||||
Sbjct 3542340 GGTTTTTCCAGTGAGGGTTTTAACGAAAATTTGCAT 3542375
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 505394350495320
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |