Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Tetranychus_20urticae_20[refseq_20GCF_5F000239435.1_202011-12-20]
641 sequences; 90,828,597 total letters
Query= NC_027778.1
Length=124244
Score E
Sequences producing significant alignments: (Bits) Value
seq468 224 8e-54
seq453 224 8e-54
seq443 105 5e-18
>seq468
Length=1118636
Score = 224 bits (248), Expect = 8e-54
Identities = 437/632 (69%), Gaps = 19/632 (3%)
Strand=Plus/Minus
Query 43676 TTGCTTACAGAAAATCCGTCTAGGTTTGTCGTGTTTCCAATTCAATATCATGACATATGG 43735
|| ||| ||| ||||| | | ||||| ||||| || ||| | |||| ||| || |||
Sbjct 1106886 TTACTTCGAGAGAATCCTAATCGTTTTGTTGTGTTCCCTATTGAGTATCCTGATATTTGG 1106827
Query 43736 CAAATGTACAAAAAAGCACAGGCGTCATTTTGGACAGCAGAAGAAGTTGATTTGACTAAA 43795
||||||| || ||||| | || || || ||||| | ||||| ||||| || || |
Sbjct 1106826 GAAATGTATAAGAAAGCTGAAGCCTCGTTCTGGACTGTTGAAGAGGTTGACTTATCTCGA 1106767
Query 43796 GACTTAGCACATTGGATT--GCATTAAAACCAC-AAGAAAAACATTTTAT-ATCTTTGGT 43851
|| ||| | | ||| | || | ||| | ||||| |||||||| | || || |
Sbjct 1106766 GATTTAACTGACTGGGCTAAGCTT---AACGATGAAGAACGTCATTTTATCAGCTATG-T 1106711
Query 43852 TTTGGCGTTTTTTGCTGCGAGCGACGGGATAGTCAATGAAAATTTGGTTAGTCGGTTTGC 43911
||||| || || |||| ||||| || || ||||||||||| | | | |||
Sbjct 1106710 GTTGGCATTCTTCTCTGCCTCAGACGGTATTGTAAATGAAAATTTAGCTGAAAGATTTAT 1106651
Query 43912 GCAAGAAGTTCA-ATTACCAGAAGCACGATGTTTTTATGGGTTTCAAATTGCCATAGAAA 43970
| || | || |||||| ||||| |||||||||||||| ||||||||||| || || |
Sbjct 1106650 TCGTGATATCCAGATTACC-GAAGCTCGATGTTTTTATGGTTTTCAAATTGCGATTGAGA 1106592
Query 43971 ATATTCATTCGGAAATGTACAGTCTTCTGATAGATACGTACATCAAAGATGGGCACGAGA 44030
|| | || || || |||||||| || |||||||| || ||||||| ||| || ||
Sbjct 1106591 ATGTGCACTCTGAGATGTACAGCCTACTGATAGACACTTACATCAGTGATCCTGACCAGC 1106532
Query 44031 AGCATCGATTGTTT--AATGCGATAGAAACAGTACC-TGCGATTAAACATAAAGCAGACT 44087
| | | || ||| || || || ||||| || || || | || || || || || |
Sbjct 1106531 GGGA--GTTTCTTTTCAAAGCTATTGAAACTGTCCCATGTG-TTGCTCAAAAGGCTGAAT 1106475
Query 44088 GGGCCCTTAAATGGA---TAAATTCAAATGATTCTTTTGGAGAACGACTTGTCGCGTTTG 44144
|||| | || |||| |||| || | ||||||| ||| || | | || ||||
Sbjct 1106474 GGGCAATAAACTGGACTGCAAATCCATCAGTCTCTTTTGCCGAAAGATTGATTGCCTTTG 1106415
Query 44145 CAGTTGTGGAAGGCATTTTCTTTTCAGGATCGTTTGCGGCCATATTTTGGTTAAAGAAAC 44204
|| ||| ||||| || || || ||||| || || || || || |||||| | || || |
Sbjct 1106414 CATGTGTTGAAGGTATCTTTTTCTCAGGCTCTTTCGCCGCTATCTTTTGGCTTAAAAAGC 1106355
Query 44205 GAGGTTTGATGCCTGGGTTGACGTTTTCAAATGAGTTAATAAGTCGTGATGAAGGCTTAC 44264
| || ||||||| || || || || || || || | || ||| |||||||| ||||
Sbjct 1106354 GTGGCCTGATGCCAGGTTTAACTTTCTCTAACGAACTTATCTCTCGAGATGAAGGATTAC 1106295
Query 44265 ATTGCGATTTTGCTTGCTTGTTACTTGGATAT 44296
|||| |||||||| || |||||| || ||||
Sbjct 1106294 ATTGTGATTTTGCCTGTTTGTTATTTAAATAT 1106263
>seq453
Length=2394413
Score = 224 bits (248), Expect = 8e-54
Identities = 437/632 (69%), Gaps = 19/632 (3%)
Strand=Plus/Minus
Query 43676 TTGCTTACAGAAAATCCGTCTAGGTTTGTCGTGTTTCCAATTCAATATCATGACATATGG 43735
|| ||| ||| ||||| | | ||||| ||||| || ||| | |||| ||| || |||
Sbjct 12338 TTACTTCGAGAGAATCCTAATCGTTTTGTTGTGTTCCCTATTGAGTATCCTGATATTTGG 12279
Query 43736 CAAATGTACAAAAAAGCACAGGCGTCATTTTGGACAGCAGAAGAAGTTGATTTGACTAAA 43795
||||||| || ||||| | || || || ||||| | ||||| ||||| || || |
Sbjct 12278 GAAATGTATAAGAAAGCTGAAGCCTCGTTCTGGACTGTTGAAGAGGTTGACTTATCTCGA 12219
Query 43796 GACTTAGCACATTGGATT--GCATTAAAACCAC-AAGAAAAACATTTTAT-ATCTTTGGT 43851
|| ||| | | ||| | || | ||| | ||||| |||||||| | || || |
Sbjct 12218 GATTTAACTGACTGGGCTAAGCTT---AACGATGAAGAACGTCATTTTATCAGCTATG-T 12163
Query 43852 TTTGGCGTTTTTTGCTGCGAGCGACGGGATAGTCAATGAAAATTTGGTTAGTCGGTTTGC 43911
||||| || || |||| ||||| || || ||||||||||| | | | |||
Sbjct 12162 GTTGGCATTCTTCTCTGCCTCAGACGGTATTGTAAATGAAAATTTAGCTGAAAGATTTAT 12103
Query 43912 GCAAGAAGTTCA-ATTACCAGAAGCACGATGTTTTTATGGGTTTCAAATTGCCATAGAAA 43970
| || | || |||||| ||||| |||||||||||||| ||||||||||| || || |
Sbjct 12102 TCGTGATATCCAGATTACC-GAAGCTCGATGTTTTTATGGTTTTCAAATTGCGATTGAGA 12044
Query 43971 ATATTCATTCGGAAATGTACAGTCTTCTGATAGATACGTACATCAAAGATGGGCACGAGA 44030
|| | || || || |||||||| || |||||||| || ||||||| ||| || ||
Sbjct 12043 ATGTGCACTCTGAGATGTACAGCCTACTGATAGACACTTACATCAGTGATCCTGACCAGC 11984
Query 44031 AGCATCGATTGTTT--AATGCGATAGAAACAGTACC-TGCGATTAAACATAAAGCAGACT 44087
| | | || ||| || || || ||||| || || || | || || || || || |
Sbjct 11983 GGGA--GTTTCTTTTCAAAGCTATTGAAACTGTCCCATGTG-TTGCTCAAAAGGCTGAAT 11927
Query 44088 GGGCCCTTAAATGGA---TAAATTCAAATGATTCTTTTGGAGAACGACTTGTCGCGTTTG 44144
|||| | || |||| |||| || | ||||||| ||| || | | || ||||
Sbjct 11926 GGGCAATAAACTGGACTGCAAATCCATCAGTCTCTTTTGCCGAAAGATTGATTGCCTTTG 11867
Query 44145 CAGTTGTGGAAGGCATTTTCTTTTCAGGATCGTTTGCGGCCATATTTTGGTTAAAGAAAC 44204
|| ||| ||||| || || || ||||| || || || || || |||||| | || || |
Sbjct 11866 CATGTGTTGAAGGTATCTTTTTCTCAGGCTCTTTCGCCGCTATCTTTTGGCTTAAAAAGC 11807
Query 44205 GAGGTTTGATGCCTGGGTTGACGTTTTCAAATGAGTTAATAAGTCGTGATGAAGGCTTAC 44264
| || ||||||| || || || || || || || | || ||| |||||||| ||||
Sbjct 11806 GTGGCCTGATGCCAGGTTTAACTTTCTCTAACGAACTTATCTCTCGAGATGAAGGATTAC 11747
Query 44265 ATTGCGATTTTGCTTGCTTGTTACTTGGATAT 44296
|||| |||||||| || |||||| || ||||
Sbjct 11746 ATTGTGATTTTGCCTGTTTGTTATTTAAATAT 11715
>seq443
Length=6836010
Score = 105 bits (116), Expect = 5e-18
Identities = 157/220 (71%), Gaps = 2/220 (1%)
Strand=Plus/Minus
Query 41045 TTTGATGGCATTGCCACCTTGTCATTTGTTATGTCAGTTTTACGTTTGCAATGGTGAACT 41104
||| ||||||||||| || ||||||| || | ||| ||||| || ||||| || |
Sbjct 505786 TTTCATGGCATTGCCTCCATGTCATTGTTTGTTTCAATTTTATGTAACTGATGGTAAATT 505727
Query 41105 GTCATGTCAATTGTATCAAAGATCAGGTGACATGGGACTAGGGGTCCCGTTTAACATAGC 41164
||| |||| | | | |||||||||| || ||||| |||| || || || || | ||
Sbjct 505726 GTCCTGTCGACTCGACCAAAGATCAGCAGATATGGGTTTAGGAGTACCATTCAATGTTGC 505667
Query 41165 GAGTTATGCTCTGCTCACGTATATGATTGCACACGTTACCAATTTAAAACCTGGTGAATT 41224
|| || || | | || ||||||| ||||| ||||| || ||| | ||||| || ||
Sbjct 505666 CAGCTACTCTATTTTAACTCATATGATCGCACATGTTACAAACTTAGAGCCTGGAGAGTT 505607
Query 41225 TGTTCA-CACGTTAGGAGATGGACATATTTACATTAATCA 41263
|||| || || || |||| ||||||||| | |||||
Sbjct 505606 CATTCATCAAATT-GGTGATGCACATATTTATAAGAATCA 505568
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 397452894999205
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |