Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tetranychus_20urticae_20[refseq_20GCF_5F000239435.1_202011-12-20] 641 sequences; 90,828,597 total letters Query= NC_027778.1 Length=124244 Score E Sequences producing significant alignments: (Bits) Value seq468 224 8e-54 seq453 224 8e-54 seq443 105 5e-18 >seq468 Length=1118636 Score = 224 bits (248), Expect = 8e-54 Identities = 437/632 (69%), Gaps = 19/632 (3%) Strand=Plus/Minus Query 43676 TTGCTTACAGAAAATCCGTCTAGGTTTGTCGTGTTTCCAATTCAATATCATGACATATGG 43735 || ||| ||| ||||| | | ||||| ||||| || ||| | |||| ||| || ||| Sbjct 1106886 TTACTTCGAGAGAATCCTAATCGTTTTGTTGTGTTCCCTATTGAGTATCCTGATATTTGG 1106827 Query 43736 CAAATGTACAAAAAAGCACAGGCGTCATTTTGGACAGCAGAAGAAGTTGATTTGACTAAA 43795 ||||||| || ||||| | || || || ||||| | ||||| ||||| || || | Sbjct 1106826 GAAATGTATAAGAAAGCTGAAGCCTCGTTCTGGACTGTTGAAGAGGTTGACTTATCTCGA 1106767 Query 43796 GACTTAGCACATTGGATT--GCATTAAAACCAC-AAGAAAAACATTTTAT-ATCTTTGGT 43851 || ||| | | ||| | || | ||| | ||||| |||||||| | || || | Sbjct 1106766 GATTTAACTGACTGGGCTAAGCTT---AACGATGAAGAACGTCATTTTATCAGCTATG-T 1106711 Query 43852 TTTGGCGTTTTTTGCTGCGAGCGACGGGATAGTCAATGAAAATTTGGTTAGTCGGTTTGC 43911 ||||| || || |||| ||||| || || ||||||||||| | | | ||| Sbjct 1106710 GTTGGCATTCTTCTCTGCCTCAGACGGTATTGTAAATGAAAATTTAGCTGAAAGATTTAT 1106651 Query 43912 GCAAGAAGTTCA-ATTACCAGAAGCACGATGTTTTTATGGGTTTCAAATTGCCATAGAAA 43970 | || | || |||||| ||||| |||||||||||||| ||||||||||| || || | Sbjct 1106650 TCGTGATATCCAGATTACC-GAAGCTCGATGTTTTTATGGTTTTCAAATTGCGATTGAGA 1106592 Query 43971 ATATTCATTCGGAAATGTACAGTCTTCTGATAGATACGTACATCAAAGATGGGCACGAGA 44030 || | || || || |||||||| || |||||||| || ||||||| ||| || || Sbjct 1106591 ATGTGCACTCTGAGATGTACAGCCTACTGATAGACACTTACATCAGTGATCCTGACCAGC 1106532 Query 44031 AGCATCGATTGTTT--AATGCGATAGAAACAGTACC-TGCGATTAAACATAAAGCAGACT 44087 | | | || ||| || || || ||||| || || || | || || || || || | Sbjct 1106531 GGGA--GTTTCTTTTCAAAGCTATTGAAACTGTCCCATGTG-TTGCTCAAAAGGCTGAAT 1106475 Query 44088 GGGCCCTTAAATGGA---TAAATTCAAATGATTCTTTTGGAGAACGACTTGTCGCGTTTG 44144 |||| | || |||| |||| || | ||||||| ||| || | | || |||| Sbjct 1106474 GGGCAATAAACTGGACTGCAAATCCATCAGTCTCTTTTGCCGAAAGATTGATTGCCTTTG 1106415 Query 44145 CAGTTGTGGAAGGCATTTTCTTTTCAGGATCGTTTGCGGCCATATTTTGGTTAAAGAAAC 44204 || ||| ||||| || || || ||||| || || || || || |||||| | || || | Sbjct 1106414 CATGTGTTGAAGGTATCTTTTTCTCAGGCTCTTTCGCCGCTATCTTTTGGCTTAAAAAGC 1106355 Query 44205 GAGGTTTGATGCCTGGGTTGACGTTTTCAAATGAGTTAATAAGTCGTGATGAAGGCTTAC 44264 | || ||||||| || || || || || || || | || ||| |||||||| |||| Sbjct 1106354 GTGGCCTGATGCCAGGTTTAACTTTCTCTAACGAACTTATCTCTCGAGATGAAGGATTAC 1106295 Query 44265 ATTGCGATTTTGCTTGCTTGTTACTTGGATAT 44296 |||| |||||||| || |||||| || |||| Sbjct 1106294 ATTGTGATTTTGCCTGTTTGTTATTTAAATAT 1106263 >seq453 Length=2394413 Score = 224 bits (248), Expect = 8e-54 Identities = 437/632 (69%), Gaps = 19/632 (3%) Strand=Plus/Minus Query 43676 TTGCTTACAGAAAATCCGTCTAGGTTTGTCGTGTTTCCAATTCAATATCATGACATATGG 43735 || ||| ||| ||||| | | ||||| ||||| || ||| | |||| ||| || ||| Sbjct 12338 TTACTTCGAGAGAATCCTAATCGTTTTGTTGTGTTCCCTATTGAGTATCCTGATATTTGG 12279 Query 43736 CAAATGTACAAAAAAGCACAGGCGTCATTTTGGACAGCAGAAGAAGTTGATTTGACTAAA 43795 ||||||| || ||||| | || || || ||||| | ||||| ||||| || || | Sbjct 12278 GAAATGTATAAGAAAGCTGAAGCCTCGTTCTGGACTGTTGAAGAGGTTGACTTATCTCGA 12219 Query 43796 GACTTAGCACATTGGATT--GCATTAAAACCAC-AAGAAAAACATTTTAT-ATCTTTGGT 43851 || ||| | | ||| | || | ||| | ||||| |||||||| | || || | Sbjct 12218 GATTTAACTGACTGGGCTAAGCTT---AACGATGAAGAACGTCATTTTATCAGCTATG-T 12163 Query 43852 TTTGGCGTTTTTTGCTGCGAGCGACGGGATAGTCAATGAAAATTTGGTTAGTCGGTTTGC 43911 ||||| || || |||| ||||| || || ||||||||||| | | | ||| Sbjct 12162 GTTGGCATTCTTCTCTGCCTCAGACGGTATTGTAAATGAAAATTTAGCTGAAAGATTTAT 12103 Query 43912 GCAAGAAGTTCA-ATTACCAGAAGCACGATGTTTTTATGGGTTTCAAATTGCCATAGAAA 43970 | || | || |||||| ||||| |||||||||||||| ||||||||||| || || | Sbjct 12102 TCGTGATATCCAGATTACC-GAAGCTCGATGTTTTTATGGTTTTCAAATTGCGATTGAGA 12044 Query 43971 ATATTCATTCGGAAATGTACAGTCTTCTGATAGATACGTACATCAAAGATGGGCACGAGA 44030 || | || || || |||||||| || |||||||| || ||||||| ||| || || Sbjct 12043 ATGTGCACTCTGAGATGTACAGCCTACTGATAGACACTTACATCAGTGATCCTGACCAGC 11984 Query 44031 AGCATCGATTGTTT--AATGCGATAGAAACAGTACC-TGCGATTAAACATAAAGCAGACT 44087 | | | || ||| || || || ||||| || || || | || || || || || | Sbjct 11983 GGGA--GTTTCTTTTCAAAGCTATTGAAACTGTCCCATGTG-TTGCTCAAAAGGCTGAAT 11927 Query 44088 GGGCCCTTAAATGGA---TAAATTCAAATGATTCTTTTGGAGAACGACTTGTCGCGTTTG 44144 |||| | || |||| |||| || | ||||||| ||| || | | || |||| Sbjct 11926 GGGCAATAAACTGGACTGCAAATCCATCAGTCTCTTTTGCCGAAAGATTGATTGCCTTTG 11867 Query 44145 CAGTTGTGGAAGGCATTTTCTTTTCAGGATCGTTTGCGGCCATATTTTGGTTAAAGAAAC 44204 || ||| ||||| || || || ||||| || || || || || |||||| | || || | Sbjct 11866 CATGTGTTGAAGGTATCTTTTTCTCAGGCTCTTTCGCCGCTATCTTTTGGCTTAAAAAGC 11807 Query 44205 GAGGTTTGATGCCTGGGTTGACGTTTTCAAATGAGTTAATAAGTCGTGATGAAGGCTTAC 44264 | || ||||||| || || || || || || || | || ||| |||||||| |||| Sbjct 11806 GTGGCCTGATGCCAGGTTTAACTTTCTCTAACGAACTTATCTCTCGAGATGAAGGATTAC 11747 Query 44265 ATTGCGATTTTGCTTGCTTGTTACTTGGATAT 44296 |||| |||||||| || |||||| || |||| Sbjct 11746 ATTGTGATTTTGCCTGTTTGTTATTTAAATAT 11715 >seq443 Length=6836010 Score = 105 bits (116), Expect = 5e-18 Identities = 157/220 (71%), Gaps = 2/220 (1%) Strand=Plus/Minus Query 41045 TTTGATGGCATTGCCACCTTGTCATTTGTTATGTCAGTTTTACGTTTGCAATGGTGAACT 41104 ||| ||||||||||| || ||||||| || | ||| ||||| || ||||| || | Sbjct 505786 TTTCATGGCATTGCCTCCATGTCATTGTTTGTTTCAATTTTATGTAACTGATGGTAAATT 505727 Query 41105 GTCATGTCAATTGTATCAAAGATCAGGTGACATGGGACTAGGGGTCCCGTTTAACATAGC 41164 ||| |||| | | | |||||||||| || ||||| |||| || || || || | || Sbjct 505726 GTCCTGTCGACTCGACCAAAGATCAGCAGATATGGGTTTAGGAGTACCATTCAATGTTGC 505667 Query 41165 GAGTTATGCTCTGCTCACGTATATGATTGCACACGTTACCAATTTAAAACCTGGTGAATT 41224 || || || | | || ||||||| ||||| ||||| || ||| | ||||| || || Sbjct 505666 CAGCTACTCTATTTTAACTCATATGATCGCACATGTTACAAACTTAGAGCCTGGAGAGTT 505607 Query 41225 TGTTCA-CACGTTAGGAGATGGACATATTTACATTAATCA 41263 |||| || || || |||| ||||||||| | ||||| Sbjct 505606 CATTCATCAAATT-GGTGATGCACATATTTATAAGAATCA 505568 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397452894999205