Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tetranychus_20urticae_20[refseq_20GCF_5F000239435.1_202011-12-20] 641 sequences; 90,828,597 total letters Query= NC_027923.1 Length=132831 Score E Sequences producing significant alignments: (Bits) Value seq442 170 2e-37 seq444 136 3e-27 >seq442 Length=7801961 Score = 170 bits (188), Expect = 2e-37 Identities = 709/1103 (64%), Gaps = 38/1103 (3%) Strand=Plus/Plus Query 130735 ATCTTTTACCAAATGATTATTAATGATTTGAAAATCACCAGCCAGGACGCGTCTAACGTA 130794 |||||| || | ||| | |||| | |||||| ||||||| || || |||| | || Sbjct 3251925 ATCTTTGACAAGATGGTGGTTAACTACTTGAAATTCACCAGAAAGAACTCGTCGAGTATA 3251984 Query 130795 AATGTTGCTCGTGAACGGTTCAAAGGATTCGTTGTTGCCGAATATTTGTGCTGTAGTTGC 130854 ||||| || || | ||||||| ||||||||||| || || || || || || | ||| Sbjct 3251985 GATGTTACTTGTATATGGTTCAATAGATTCGTTGTTCCCCAAAATCTGAGCAGTTGATGC 3252044 Query 130855 GGTGGGCATGTATGCCACTAATAGAGAATTACGAAGACCGTGCGTCGTGATTTTTCGCTT 130914 || |||||| || | ||| ||| || |||||||| || | | ||||| | ||| Sbjct 3252045 TGTAGGCATGGGCGCTAATAACAGACTGTTTCGAAGACCATGTTTAGCAATTTTACTCTT 3252104 Query 130915 CAATTCATCCCAATCCCATAGAGAGGTAGGTTTGACATTGTTCCACATATCAAATTGTAG 130974 || || ||| ||||| ||| | ||| | ||| |||||||||| |||| | Sbjct 3252105 CAGCTCTGTCCAGTCCCACAGATTAGATGGTGTTACA---CCCCACATATCATATTGCAA 3252161 Query 130975 TATGCCTTTACTGGCGGGA----CTGGATTCGAACGATTCGTAGATTCC---TTCGACAC 131027 || |||||| |||||| ||| || | | |||||| ||| ||| | Sbjct 3252162 AATCCCTTTAGAAGCGGGAGATCCTGCAT----AAGTTTCGTAAGGTCCGAGTTCTTC-- 3252215 Query 131028 GAGCCAGGTCGTTGCTAGCTTCCAAAGCTCCGTAATAAATGGTTTCGGCAATTTGTTTAT 131087 ||| || || || ||||| | |||||| ||||| || || || ||||| || Sbjct 3252216 -AGCGAGCTCACAACTTGCTTCGAGAGCTCCATAATAGATTGTCTCAAAGATTTGGACAT 3252274 Query 131088 TTAATTGTTTCGCTTGGTTGCTCTCGTAAGGAAATTTCATTAAAATAAAAGCGTCTGCGA 131147 | |||| |||| ||| || | ||| || ||||||||| ||| |||||||| | Sbjct 3252275 TCAATTTACGAGCTTCTGGGCTGTCAAATGGATATCTCATTAAAAGAAATGCGTCTGCTA 3252334 Query 131148 GACCCTGTATCCCAACGCCCACCGGTCTA-TGTTTTAAATTACAT-TTACGCGAACATTC 131205 || || | || | ||| | |||| | | |||| || || | || | || Sbjct 3252335 AGCCTTGAACTCCTAAGCCAATAGGTCGATTCTTTTTGTTTGAATAAGAGGCTTCCTTTA 3252394 Query 131206 GGTGGGATAAAGGTTAATGTCAATTATTTTGTTTAAATTGCGCACTACAATTTGTGTGAC 131265 | ||||||| ||| || ||||| |||||||||||||| || || || || || Sbjct 3252395 G--AGGATAAAAGTTGATCTCAATAATTTTGTTTAAATTTCGTGTGACCGCTTTGGTAAC 3252452 Query 131266 GCTTTTCAATTTGTCGAAATCAAACGTGCCAGTTTCGAGGTTTACAAATTGATTTACACA 131325 ||| | | | | |||||||| | ||| | || | ||||||| || | Sbjct 3252453 TTCTTTGAGTCTTGCAAAATCAAA--TTTTTGTTCCTCGG-TAACAAATTTTTTCAAGGC 3252509 Query 131326 TATTGACGCCAGATTACAAACTGCCGTTTCGTCATAATCGCAATACTGAACAATTTCGGC 131385 ||| || || ||||||||||| || ||| ||| | | ||| | ||||||||| | Sbjct 3252510 TATAGAGGCAAGATTACAAACAGCAACTTCATCAGGGGCACTATATTCAACAATTTCAGT 3252569 Query 131386 GCACAAATTACTGCTCTTTATGGTGCCCAAATTTTGTTGATTG--CTTTTAGCATTCACA 131443 ||||| ||| | ||| ||||| || | ||||| |||||| ||||| |||| | Sbjct 3252570 GCACAGATTTGAACACTTGATGGTTCCAAGATTTTTCTGATTGGACTTTT--CATTACAA 3252627 Query 131444 TGGTCCTTGTACATCATGTAGGGCGTGCCCGTTTCGACTTGAGTTTCAATAAT--GTATC 131501 || || || || | ||| || || || ||||| | || | ||||| || | | Sbjct 3252628 TGATCTTTATAAAGCATATACGGAACACCAGTTTCCATCTGGGCATCAATGATTGCTTGC 3252687 Query 131502 GAAAGAGTTTTCGAGCAGACAATTGATATTTGTATTGGCCGCGTTTTTCGTAATTTTCGT 131561 |||||| |||||| | ||| | |||||| || ||| || || | | Sbjct 3252688 CAAAGAG--CTCGAGCTTTTATTTGCTGATTGTATCTTTTTTCTTCTTCATATTTAACAT 3252745 Query 131562 ACAACGTTTCAAAGTTTTGGCCAAACGAACTGTCCAA---ATTGGGACATTCGCTGGGAC 131618 | | | | | || | | ||| | |||| || || | ||||||| | |||| Sbjct 3252746 AAAGCTTATTGAATTCATCTCCATA--AACT-TCGAATAGACCAGGACATTTGTGTGGAC 3252802 Query 131619 ACATTAGCGACCACACGCCGTTCTGTTCAACTCGCTTCATAAACAAATCCGGCACCCATA 131678 |||| || ||||| | | | || |||||||| |||||| | || |||||||| | Sbjct 3252803 ACATAAGACTCCACATTTCATCTTTTTTAACTCGCTCCATAAAAAGATTAGGCACCCAAA 3252862 Query 131679 ACGCGTACAACAGATCTCTAGCTTTTTTCTCTTCTGTACCCATAAtttttttCAAATTTA 131738 || | |||| ||||| |||| | |||||||| |||| | ||||| | || || Sbjct 3252863 GAGCTAAAAACAAATCTCGAGCTCTCATCTCTTCTTTACCAGTGTTTTTTCTTAAGCATA 3252922 Query 131739 AAAAGTCCAAAATGTCCGCATGCCAGGGTTCCAAATACACTGCCATTGCGCCTTTGCGCT 131798 || || || | || |||||||| || || | ||| | || || ||| || | Sbjct 3252923 GGAAATCAAAGACATCAGCATGCCAAGGCTCAATATAAATAGCATAAGCTCCTGGTCGTT 3252982 Query 131799 TACCGCCTTGATTAACATGACGA 131821 |||| ||||| || |||| |||| Sbjct 3252983 TACCCCCTTGGTTGACATAACGA 3253005 >seq444 Length=5217058 Score = 136 bits (150), Expect = 3e-27 Identities = 159/215 (74%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 27033 CGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCG 27092 || || ||||| || | ||||| ||||||||||| ||||| ||||||| | | || | Sbjct 3542389 CGTAAGACCAAGTGAAGGGTAGACTCTTTTTGAATGTTGTAATCGCTCAGGGTACGTCCA 3542448 Query 27093 TCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTA 27152 ||||| ||||||||||| ||| | || | |||||||||||| || || | ||| || || Sbjct 3542449 TCTTCAAGCTGTTTACCAGCGAAGATCAAACGCTGTTGATCGGGTGGGATACCTTCCTTG 3542508 Query 27153 TCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATA 27212 || ||||||| ||| | |||| | |||||| | | |||||| || || || || Sbjct 3542509 TCTTGGATCTTGGCTTTAACATTTTCAATAGTGTCCGATGGTTCAACCTCAAGGGTGATG 3542568 Query 27213 GATTTGCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 | ||| || || ||||| || || || |||||||| Sbjct 3542569 GTTTTTCCAGTAAGAGTCTTGACGAAAATTTGCAT 3542603 Score = 127 bits (140), Expect = 2e-24 Identities = 157/215 (73%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 27033 CGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCG 27092 ||||| ||||| || | ||||| |||||||||||||| || || || | | || || Sbjct 3541813 CGCAAGACCAAGTGAAGGGTAGATTCTTTTTGAATATTATAATCACTGAGAGTACGACCG 3541872 Query 27093 TCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTA 27152 || |||||||||||||| ||| | || | ||| ||||| || || || | ||| ||||| Sbjct 3541873 TCCTCGAGCTGTTTACCAGCGAAGATCAAACGTTGTTGGTCAGGTGGGATACCTTCTTTG 3541932 Query 27153 TCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATA 27212 || ||| ||| ||||| | |||| | ||| || | | |||||| || || || || Sbjct 3541933 TCTTGGATTTTGGCTTTCACGTTTTCAATAGTATCAGAAGGTTCAACCTCAAGTGTAATG 3541992 Query 27213 GATTTGCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 | || || || |||||||| || || |||||||| Sbjct 3541993 GTCTTACCAGTAAGAGTTTTTACGAAAATTTGCAT 3542027 Score = 111 bits (122), Expect = 1e-19 Identities = 154/216 (71%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 27033 CGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCG 27092 || ||||| |||||||| || || ||||| ||||| |||||||| | | | || | Sbjct 3541585 CGTAATACTAAATGTAAAGTTGATTCTTTCTGAATGTTGTAGTCAGAAAGGGTTCGACCA 3541644 Query 27093 TCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTA 27152 || || ||||||||||| ||| | ||||||||||||||||| || || | || || || Sbjct 3541645 TCCTCAAGCTGTTTACCAGCGAAGATGAGACGCTGTTGATCAGGTGGGATTCCTTCCTTG 3541704 Query 27153 TCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATA 27212 || ||| || || | |||| | ||||| | | ||||||||| | || || Sbjct 3541705 TCTTGGATTTTAGCCTTGACATTTTCAATGGTGTCGGAAGGTTCAACTTCCAAGGTGATG 3541764 Query 27213 GATTTGCCCGTCAGAGTTTTCACAAAGATTTGCATA 27248 | ||| || || || ||||| || || ||||||||| Sbjct 3541765 GTTTTACCAGTGAGGGTTTTGACGAAAATTTGCATA 3541800 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 424931080332792