Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Tetranychus_20urticae_20[refseq_20GCF_5F000239435.1_202011-12-20]
641 sequences; 90,828,597 total letters
Query= NC_027923.1
Length=132831
Score E
Sequences producing significant alignments: (Bits) Value
seq442 170 2e-37
seq444 136 3e-27
>seq442
Length=7801961
Score = 170 bits (188), Expect = 2e-37
Identities = 709/1103 (64%), Gaps = 38/1103 (3%)
Strand=Plus/Plus
Query 130735 ATCTTTTACCAAATGATTATTAATGATTTGAAAATCACCAGCCAGGACGCGTCTAACGTA 130794
|||||| || | ||| | |||| | |||||| ||||||| || || |||| | ||
Sbjct 3251925 ATCTTTGACAAGATGGTGGTTAACTACTTGAAATTCACCAGAAAGAACTCGTCGAGTATA 3251984
Query 130795 AATGTTGCTCGTGAACGGTTCAAAGGATTCGTTGTTGCCGAATATTTGTGCTGTAGTTGC 130854
||||| || || | ||||||| ||||||||||| || || || || || || | |||
Sbjct 3251985 GATGTTACTTGTATATGGTTCAATAGATTCGTTGTTCCCCAAAATCTGAGCAGTTGATGC 3252044
Query 130855 GGTGGGCATGTATGCCACTAATAGAGAATTACGAAGACCGTGCGTCGTGATTTTTCGCTT 130914
|| |||||| || | ||| ||| || |||||||| || | | ||||| | |||
Sbjct 3252045 TGTAGGCATGGGCGCTAATAACAGACTGTTTCGAAGACCATGTTTAGCAATTTTACTCTT 3252104
Query 130915 CAATTCATCCCAATCCCATAGAGAGGTAGGTTTGACATTGTTCCACATATCAAATTGTAG 130974
|| || ||| ||||| ||| | ||| | ||| |||||||||| |||| |
Sbjct 3252105 CAGCTCTGTCCAGTCCCACAGATTAGATGGTGTTACA---CCCCACATATCATATTGCAA 3252161
Query 130975 TATGCCTTTACTGGCGGGA----CTGGATTCGAACGATTCGTAGATTCC---TTCGACAC 131027
|| |||||| |||||| ||| || | | |||||| ||| ||| |
Sbjct 3252162 AATCCCTTTAGAAGCGGGAGATCCTGCAT----AAGTTTCGTAAGGTCCGAGTTCTTC-- 3252215
Query 131028 GAGCCAGGTCGTTGCTAGCTTCCAAAGCTCCGTAATAAATGGTTTCGGCAATTTGTTTAT 131087
||| || || || ||||| | |||||| ||||| || || || ||||| ||
Sbjct 3252216 -AGCGAGCTCACAACTTGCTTCGAGAGCTCCATAATAGATTGTCTCAAAGATTTGGACAT 3252274
Query 131088 TTAATTGTTTCGCTTGGTTGCTCTCGTAAGGAAATTTCATTAAAATAAAAGCGTCTGCGA 131147
| |||| |||| ||| || | ||| || ||||||||| ||| |||||||| |
Sbjct 3252275 TCAATTTACGAGCTTCTGGGCTGTCAAATGGATATCTCATTAAAAGAAATGCGTCTGCTA 3252334
Query 131148 GACCCTGTATCCCAACGCCCACCGGTCTA-TGTTTTAAATTACAT-TTACGCGAACATTC 131205
|| || | || | ||| | |||| | | |||| || || | || | ||
Sbjct 3252335 AGCCTTGAACTCCTAAGCCAATAGGTCGATTCTTTTTGTTTGAATAAGAGGCTTCCTTTA 3252394
Query 131206 GGTGGGATAAAGGTTAATGTCAATTATTTTGTTTAAATTGCGCACTACAATTTGTGTGAC 131265
| ||||||| ||| || ||||| |||||||||||||| || || || || ||
Sbjct 3252395 G--AGGATAAAAGTTGATCTCAATAATTTTGTTTAAATTTCGTGTGACCGCTTTGGTAAC 3252452
Query 131266 GCTTTTCAATTTGTCGAAATCAAACGTGCCAGTTTCGAGGTTTACAAATTGATTTACACA 131325
||| | | | | |||||||| | ||| | || | ||||||| || |
Sbjct 3252453 TTCTTTGAGTCTTGCAAAATCAAA--TTTTTGTTCCTCGG-TAACAAATTTTTTCAAGGC 3252509
Query 131326 TATTGACGCCAGATTACAAACTGCCGTTTCGTCATAATCGCAATACTGAACAATTTCGGC 131385
||| || || ||||||||||| || ||| ||| | | ||| | ||||||||| |
Sbjct 3252510 TATAGAGGCAAGATTACAAACAGCAACTTCATCAGGGGCACTATATTCAACAATTTCAGT 3252569
Query 131386 GCACAAATTACTGCTCTTTATGGTGCCCAAATTTTGTTGATTG--CTTTTAGCATTCACA 131443
||||| ||| | ||| ||||| || | ||||| |||||| ||||| |||| |
Sbjct 3252570 GCACAGATTTGAACACTTGATGGTTCCAAGATTTTTCTGATTGGACTTTT--CATTACAA 3252627
Query 131444 TGGTCCTTGTACATCATGTAGGGCGTGCCCGTTTCGACTTGAGTTTCAATAAT--GTATC 131501
|| || || || | ||| || || || ||||| | || | ||||| || | |
Sbjct 3252628 TGATCTTTATAAAGCATATACGGAACACCAGTTTCCATCTGGGCATCAATGATTGCTTGC 3252687
Query 131502 GAAAGAGTTTTCGAGCAGACAATTGATATTTGTATTGGCCGCGTTTTTCGTAATTTTCGT 131561
|||||| |||||| | ||| | |||||| || ||| || || | |
Sbjct 3252688 CAAAGAG--CTCGAGCTTTTATTTGCTGATTGTATCTTTTTTCTTCTTCATATTTAACAT 3252745
Query 131562 ACAACGTTTCAAAGTTTTGGCCAAACGAACTGTCCAA---ATTGGGACATTCGCTGGGAC 131618
| | | | | || | | ||| | |||| || || | ||||||| | ||||
Sbjct 3252746 AAAGCTTATTGAATTCATCTCCATA--AACT-TCGAATAGACCAGGACATTTGTGTGGAC 3252802
Query 131619 ACATTAGCGACCACACGCCGTTCTGTTCAACTCGCTTCATAAACAAATCCGGCACCCATA 131678
|||| || ||||| | | | || |||||||| |||||| | || |||||||| |
Sbjct 3252803 ACATAAGACTCCACATTTCATCTTTTTTAACTCGCTCCATAAAAAGATTAGGCACCCAAA 3252862
Query 131679 ACGCGTACAACAGATCTCTAGCTTTTTTCTCTTCTGTACCCATAAtttttttCAAATTTA 131738
|| | |||| ||||| |||| | |||||||| |||| | ||||| | || ||
Sbjct 3252863 GAGCTAAAAACAAATCTCGAGCTCTCATCTCTTCTTTACCAGTGTTTTTTCTTAAGCATA 3252922
Query 131739 AAAAGTCCAAAATGTCCGCATGCCAGGGTTCCAAATACACTGCCATTGCGCCTTTGCGCT 131798
|| || || | || |||||||| || || | ||| | || || ||| || |
Sbjct 3252923 GGAAATCAAAGACATCAGCATGCCAAGGCTCAATATAAATAGCATAAGCTCCTGGTCGTT 3252982
Query 131799 TACCGCCTTGATTAACATGACGA 131821
|||| ||||| || |||| ||||
Sbjct 3252983 TACCCCCTTGGTTGACATAACGA 3253005
>seq444
Length=5217058
Score = 136 bits (150), Expect = 3e-27
Identities = 159/215 (74%), Gaps = 0/215 (0%)
Strand=Plus/Plus
Query 27033 CGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCG 27092
|| || ||||| || | ||||| ||||||||||| ||||| ||||||| | | || |
Sbjct 3542389 CGTAAGACCAAGTGAAGGGTAGACTCTTTTTGAATGTTGTAATCGCTCAGGGTACGTCCA 3542448
Query 27093 TCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTA 27152
||||| ||||||||||| ||| | || | |||||||||||| || || | ||| || ||
Sbjct 3542449 TCTTCAAGCTGTTTACCAGCGAAGATCAAACGCTGTTGATCGGGTGGGATACCTTCCTTG 3542508
Query 27153 TCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATA 27212
|| ||||||| ||| | |||| | |||||| | | |||||| || || || ||
Sbjct 3542509 TCTTGGATCTTGGCTTTAACATTTTCAATAGTGTCCGATGGTTCAACCTCAAGGGTGATG 3542568
Query 27213 GATTTGCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247
| ||| || || ||||| || || || ||||||||
Sbjct 3542569 GTTTTTCCAGTAAGAGTCTTGACGAAAATTTGCAT 3542603
Score = 127 bits (140), Expect = 2e-24
Identities = 157/215 (73%), Gaps = 0/215 (0%)
Strand=Plus/Plus
Query 27033 CGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCG 27092
||||| ||||| || | ||||| |||||||||||||| || || || | | || ||
Sbjct 3541813 CGCAAGACCAAGTGAAGGGTAGATTCTTTTTGAATATTATAATCACTGAGAGTACGACCG 3541872
Query 27093 TCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTA 27152
|| |||||||||||||| ||| | || | ||| ||||| || || || | ||| |||||
Sbjct 3541873 TCCTCGAGCTGTTTACCAGCGAAGATCAAACGTTGTTGGTCAGGTGGGATACCTTCTTTG 3541932
Query 27153 TCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATA 27212
|| ||| ||| ||||| | |||| | ||| || | | |||||| || || || ||
Sbjct 3541933 TCTTGGATTTTGGCTTTCACGTTTTCAATAGTATCAGAAGGTTCAACCTCAAGTGTAATG 3541992
Query 27213 GATTTGCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247
| || || || |||||||| || || ||||||||
Sbjct 3541993 GTCTTACCAGTAAGAGTTTTTACGAAAATTTGCAT 3542027
Score = 111 bits (122), Expect = 1e-19
Identities = 154/216 (71%), Gaps = 0/216 (0%)
Strand=Plus/Plus
Query 27033 CGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCG 27092
|| ||||| |||||||| || || ||||| ||||| |||||||| | | | || |
Sbjct 3541585 CGTAATACTAAATGTAAAGTTGATTCTTTCTGAATGTTGTAGTCAGAAAGGGTTCGACCA 3541644
Query 27093 TCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTA 27152
|| || ||||||||||| ||| | ||||||||||||||||| || || | || || ||
Sbjct 3541645 TCCTCAAGCTGTTTACCAGCGAAGATGAGACGCTGTTGATCAGGTGGGATTCCTTCCTTG 3541704
Query 27153 TCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATA 27212
|| ||| || || | |||| | ||||| | | ||||||||| | || ||
Sbjct 3541705 TCTTGGATTTTAGCCTTGACATTTTCAATGGTGTCGGAAGGTTCAACTTCCAAGGTGATG 3541764
Query 27213 GATTTGCCCGTCAGAGTTTTCACAAAGATTTGCATA 27248
| ||| || || || ||||| || || |||||||||
Sbjct 3541765 GTTTTACCAGTGAGGGTTTTGACGAAAATTTGCATA 3541800
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 424931080332792
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |