Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tetranychus_20urticae_20[refseq_20GCF_5F000239435.1_202011-12-20] 641 sequences; 90,828,597 total letters Query= NC_028093.1 Length=182309 Score E Sequences producing significant alignments: (Bits) Value seq450 109 6e-19 seq468 107 2e-18 seq453 107 2e-18 >seq450 Length=3639652 Score = 109 bits (120), Expect = 6e-19 Identities = 238/351 (68%), Gaps = 8/351 (2%) Strand=Plus/Plus Query 7238 TACCAAGCCTCAACTTCGGAGATGTTTGGTAAAGTCCGAGAAACTCCACAAAACGAGGAG 7297 || ||||| |||||| || | | ||||||||||| ||||| |||||||| || | Sbjct 785435 TATCAAGCATCAACTAGTGAACTTTATGGTAAAGTCCAAGAAATACCACAAAATGAAAAA 785494 Query 7298 ACACCCTTCTACCCACGCTCGGTCTACGGAGT--CTCAAAGGTTGCGGCACATTGGCTCG 7355 ||||| ||||| ||| | ||| ||||| || || || || | || ||| | | Sbjct 785495 ACACCTTTCTATCCAAGATCGCCTTACGGTGTTGCTAAATTGTATGGTTAC--TGGATAG 785552 Query 7356 TCAAAAATTACCGCGAGTCTTACGGACTGTTTGCGTGCTCCGGAATCCTCTTCAACCATG 7415 | || || || || | ||| ||||||| | || || | || || |||| Sbjct 785553 TTGTCAACTATCGTGAAGCATACAACATGTTTGCAGTCAATGGTATTTTATTTAATCATG 785612 Query 7416 AATCACCGAGACGAGGTGCAGACTTTGTCACAAAGAAGATTACC-GAGG-GTATCAAACA 7473 || || ||| |||||| | ||||| || || ||||| |||| || | || | Sbjct 785613 AAAGCCCTAGAAGAGGTGAAACTTTTGTTACCCGTAAAATTACTAGAGGTGTTGCCAAGA 785672 Query 7474 AATCATGAAGGGTGAAAAGGAGTTCATTGAATTGGGTAACATAAACGCGGCGAGAGATTG 7533 || | ||||| ||| | || ||| | |||||| || |||| ||||| || Sbjct 785673 TTTCT--ATCGGTGAGTTGGACTATATCGAACTAGGTAACTTAGACGCCAAAAGAGACTG 785730 Query 7534 GGGTCACGCGAAGGACTATGTTGAAGCTATGTGGCTCATGCTTCAACAAGA 7584 |||||| ||||| || ||||||||||||||||||||||||||||| ||||| Sbjct 785731 GGGTCATGCGAAAGATTATGTTGAAGCTATGTGGCTCATGCTTCAGCAAGA 785781 >seq468 Length=1118636 Score = 107 bits (118), Expect = 2e-18 Identities = 161/225 (72%), Gaps = 14/225 (6%) Strand=Plus/Minus Query 94721 AAGCCATCCAAACAGTTCCGTGTATT---CAAAAGAAAGCGGATTGGGCTATGAAGTGGT 94777 |||| || |||| || || ||| || |||||| || || ||||| || || ||| Sbjct 1106516 AAGCTATTGAAACTGTCCCATGTGTTGCTCAAAAG---GCTGAATGGGCAATAAACTGGA 1106460 Query 94778 TTG---ATACAA-AGTCGCGTTCCTTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAG 94833 || || || |||| || ||||| || || | | || ||||| |||||||| Sbjct 1106459 CTGCAAATCCATCAGTC----TCTTTTGCCGAAAGATTGATTGCCTTTGCATGTGTTGAA 1106404 Query 94834 GGTATCTTCTTCTCTGGTTCCTTCTGCGCTATTTATTGGCTCAAGAAGCGAGGTCTCATG 94893 |||||||| ||||| || || ||| |||||| | |||||| || ||||| || || ||| Sbjct 1106403 GGTATCTTTTTCTCAGGCTCTTTCGCCGCTATCTTTTGGCTTAAAAAGCGTGGCCTGATG 1106344 Query 94894 CCAGGTCTCTGCTTCTCCAACGAGCTTATCTCTCGTGACGAGGGA 94938 |||||| | ||||| ||||| ||||||||||| || || ||| Sbjct 1106343 CCAGGTTTAACTTTCTCTAACGAACTTATCTCTCGAGATGAAGGA 1106299 >seq453 Length=2394413 Score = 107 bits (118), Expect = 2e-18 Identities = 161/225 (72%), Gaps = 14/225 (6%) Strand=Plus/Minus Query 94721 AAGCCATCCAAACAGTTCCGTGTATT---CAAAAGAAAGCGGATTGGGCTATGAAGTGGT 94777 |||| || |||| || || ||| || |||||| || || ||||| || || ||| Sbjct 11968 AAGCTATTGAAACTGTCCCATGTGTTGCTCAAAAG---GCTGAATGGGCAATAAACTGGA 11912 Query 94778 TTG---ATACAA-AGTCGCGTTCCTTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAG 94833 || || || |||| || ||||| || || | | || ||||| |||||||| Sbjct 11911 CTGCAAATCCATCAGTC----TCTTTTGCCGAAAGATTGATTGCCTTTGCATGTGTTGAA 11856 Query 94834 GGTATCTTCTTCTCTGGTTCCTTCTGCGCTATTTATTGGCTCAAGAAGCGAGGTCTCATG 94893 |||||||| ||||| || || ||| |||||| | |||||| || ||||| || || ||| Sbjct 11855 GGTATCTTTTTCTCAGGCTCTTTCGCCGCTATCTTTTGGCTTAAAAAGCGTGGCCTGATG 11796 Query 94894 CCAGGTCTCTGCTTCTCCAACGAGCTTATCTCTCGTGACGAGGGA 94938 |||||| | ||||| ||||| ||||||||||| || || ||| Sbjct 11795 CCAGGTTTAACTTTCTCTAACGAACTTATCTCTCGAGATGAAGGA 11751 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 583256126622840