Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Tetranychus_20urticae_20[refseq_20GCF_5F000239435.1_202011-12-20]
641 sequences; 90,828,597 total letters
Query= NC_028104.1
Length=73689
Score E
Sequences producing significant alignments: (Bits) Value
seq478 84.2 1e-11
>seq478
Length=629985
Score = 84.2 bits (92), Expect = 1e-11
Identities = 330/516 (64%), Gaps = 15/516 (3%)
Strand=Plus/Minus
Query 64883 GTACTAAATCCTGTGCCAATACCCTTTGAGCCATTTATTAAAATCATCGGAATAATTGGT 64942
||||| | ||||| |||||||| | | || || | |||| ||| |||| || ||||
Sbjct 272626 GTACTCCAACCTGTACCAATACCTTCAGCACCGTTCACCAAAACCATTGGAAGAACTGGT 272567
Query 64943 GCATAAAAGATAGGCTCAACAATGAGACCATCATCATCCAAATACTTCAAAATGGCATCA 65002
||||| | || ||||| | |||||||| | ||| || | | | ||||
Sbjct 272566 ACATAATATTCGGGTTCAACTTTACTGTTATCATCATATAGATAATTGAGTAAAGGATCA 272507
Query 65003 TCCTCTTTTGGAAATATAGAACGAGTTATTTTATTCAATTGAGTATAAATATATCTTTCG 65062
|| | | |||||||| ||||| || | | | || | ||| |||| || |
Sbjct 272506 TCAAGTATGGGAAATATTTTACGAGCTAATGGACTTAACTTAGTGAAAATGTAAC----- 272452
Query 65063 GATGCGTGG-----TCTTGTCCAGTTCGT---CGTGTTCCAAACTGACCATTTGGCATTA 65114
|| | ||| |||| ||| || ||||| ||||| |||||| ||||| |
Sbjct 272451 GAGGACTGGCCGCATCTTTACCACCAAGTAAACGTGTACCAAATTGACCAAGGGGCATGA 272392
Query 65115 ATAAATTAATATTGTTTGAACCAATAAAATTCTGAGCCATTCCGATAATTGCTGCATTTA 65174
| ||||||||||| |||| |||||| ||||||| ||||| | ||| | |
Sbjct 272391 GAAGGTTAATATTGTTGCTTCCAACAAAATTTTGAGCCAAATTTATAATAGTTGCCATAA 272332
Query 65175 AACTCGCTTCACCGTGATGATATCCTGAATGTTCAGAGACATATCCACTAAATTGAGCAA 65234
|||||||| |||||||| | |||| |||| || ||| ||||||||||
Sbjct 272331 GTGAAGCTTCACCATGATGATAACATGAAACTTCACCAACTGTACCAGCCAATTGAGCAA 272272
Query 65235 CTTTTATTTCCGTTGTTAAATTCTTTTTAAATGCA-GAATACAATATTTTCCGTAAACTA 65293
|||| |||| | || |||| | | ||| ||| ||||| | || ||| ||| |
Sbjct 272271 CTTTGATTT-CTTTTTTAAGATTTCGGAAAAAGCATGAATAAAGTACTTTTCGTTGTCCT 272213
Query 65294 ATTTTCAATCCATCCATTAAATTAGGAATGCTTCTGTCACAATCATATTTTGAGAAATGT 65353
||| | |||||||| | ||||| || ||| ||| | || |||| ||
Sbjct 272212 GGTTTAAGGCCATCCATCATGGATGGAATAGATCGTTCATTATCCAAGTTACTGAAAAGT 272153
Query 65354 ATGAATTCTTTGTTAATAAATTCTTCATATGAAACA 65389
| || |||||||| | ||| |||| ||| | ||||
Sbjct 272152 ACTAACTCTTTGTTGACAAAATCTTTATAAGTAACA 272117
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 235678158823650
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |