Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tetranychus_20urticae_20[refseq_20GCF_5F000239435.1_202011-12-20] 641 sequences; 90,828,597 total letters Query= NC_028104.1 Length=73689 Score E Sequences producing significant alignments: (Bits) Value seq478 84.2 1e-11 >seq478 Length=629985 Score = 84.2 bits (92), Expect = 1e-11 Identities = 330/516 (64%), Gaps = 15/516 (3%) Strand=Plus/Minus Query 64883 GTACTAAATCCTGTGCCAATACCCTTTGAGCCATTTATTAAAATCATCGGAATAATTGGT 64942 ||||| | ||||| |||||||| | | || || | |||| ||| |||| || |||| Sbjct 272626 GTACTCCAACCTGTACCAATACCTTCAGCACCGTTCACCAAAACCATTGGAAGAACTGGT 272567 Query 64943 GCATAAAAGATAGGCTCAACAATGAGACCATCATCATCCAAATACTTCAAAATGGCATCA 65002 ||||| | || ||||| | |||||||| | ||| || | | | |||| Sbjct 272566 ACATAATATTCGGGTTCAACTTTACTGTTATCATCATATAGATAATTGAGTAAAGGATCA 272507 Query 65003 TCCTCTTTTGGAAATATAGAACGAGTTATTTTATTCAATTGAGTATAAATATATCTTTCG 65062 || | | |||||||| ||||| || | | | || | ||| |||| || | Sbjct 272506 TCAAGTATGGGAAATATTTTACGAGCTAATGGACTTAACTTAGTGAAAATGTAAC----- 272452 Query 65063 GATGCGTGG-----TCTTGTCCAGTTCGT---CGTGTTCCAAACTGACCATTTGGCATTA 65114 || | ||| |||| ||| || ||||| ||||| |||||| ||||| | Sbjct 272451 GAGGACTGGCCGCATCTTTACCACCAAGTAAACGTGTACCAAATTGACCAAGGGGCATGA 272392 Query 65115 ATAAATTAATATTGTTTGAACCAATAAAATTCTGAGCCATTCCGATAATTGCTGCATTTA 65174 | ||||||||||| |||| |||||| ||||||| ||||| | ||| | | Sbjct 272391 GAAGGTTAATATTGTTGCTTCCAACAAAATTTTGAGCCAAATTTATAATAGTTGCCATAA 272332 Query 65175 AACTCGCTTCACCGTGATGATATCCTGAATGTTCAGAGACATATCCACTAAATTGAGCAA 65234 |||||||| |||||||| | |||| |||| || ||| |||||||||| Sbjct 272331 GTGAAGCTTCACCATGATGATAACATGAAACTTCACCAACTGTACCAGCCAATTGAGCAA 272272 Query 65235 CTTTTATTTCCGTTGTTAAATTCTTTTTAAATGCA-GAATACAATATTTTCCGTAAACTA 65293 |||| |||| | || |||| | | ||| ||| ||||| | || ||| ||| | Sbjct 272271 CTTTGATTT-CTTTTTTAAGATTTCGGAAAAAGCATGAATAAAGTACTTTTCGTTGTCCT 272213 Query 65294 ATTTTCAATCCATCCATTAAATTAGGAATGCTTCTGTCACAATCATATTTTGAGAAATGT 65353 ||| | |||||||| | ||||| || ||| ||| | || |||| || Sbjct 272212 GGTTTAAGGCCATCCATCATGGATGGAATAGATCGTTCATTATCCAAGTTACTGAAAAGT 272153 Query 65354 ATGAATTCTTTGTTAATAAATTCTTCATATGAAACA 65389 | || |||||||| | ||| |||| ||| | |||| Sbjct 272152 ACTAACTCTTTGTTGACAAAATCTTTATAAGTAACA 272117 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 235678158823650