Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Tetranychus_20urticae_20[refseq_20GCF_5F000239435.1_202011-12-20]
641 sequences; 90,828,597 total letters
Query= NC_028108.1
Length=171454
Score E
Sequences producing significant alignments: (Bits) Value
seq468 122 1e-22
seq453 122 1e-22
>seq468
Length=1118636
Score = 122 bits (134), Expect = 1e-22
Identities = 376/574 (66%), Gaps = 7/574 (1%)
Strand=Plus/Minus
Query 59562 TTTCCTATACGGTACCCGGATCTGTGGGCCCTGTATAAGAAAGCGATCGGTTCATTCTGG 59621
|| ||||| ||| || ||| | |||| ||||||||||||| | || ||||||
Sbjct 1106853 TTCCCTATTGAGTATCCTGATATTTGGGAAATGTATAAGAAAGCTGAAGCCTCGTTCTGG 1106794
Query 59622 TCCGTCGAGGAGATTGACCTCGCCGGAGACCTGAAGGATTGGGACAAGCTCAATTACGAC 59681
| || || ||| ||||| | | |||| | | || |||| ||||| || | ||
Sbjct 1106793 ACTGTTGAAGAGGTTGACTTATCTCGAGATTTAACTGACTGGGCTAAGCTTAACGATGAA 1106734
Query 59682 GAGCAGCATTTCATCAAGATGGTCCTGGCCTTCTTCGCGGCGAGTGATGGAATTGTGATG 59741
|| | ||||| |||| || |||| |||||| | || || || ||||| |
Sbjct 1106733 GAACGTCATTTTATCAGCTATGTGTTGGCATTCTTCTCTGCCTCAGACGGTATTGTAAAT 1106674
Query 59742 GAAAATATAGACATGAACTTTTCCAAG-GATGTCCAGATTGCCGAGGCCCGGTCGTTCTA 59800
|||||| ||| | || ||| | ||| |||||||| |||| || || | || ||
Sbjct 1106673 GAAAATTTAG-CTGAAAGATTTATTCGTGATATCCAGATTACCGAAGCTCGATGTTTTTA 1106615
Query 59801 CGCGTATCAGTCGTTCAACGAGTCTATCCACTCCGAGACGTACTCGCTCATGATCGATAA 59860
| | ||| | ||| | | ||||| |||| |||| || |||| || |
Sbjct 1106614 TGGTTTTCAAATTGCGATTGAGAATGTGCACTCTGAGATGTACAGCCTACTGATAGACAC 1106555
Query 59861 GTTGGTCAAGGATCCGGAAGAGAAGGCTGGTCTGTTCCGTGCCATAGAGAC-GTCCCCCG 59919
| ||| ||||| || || || ||| ||| || || || || ||||| |
Sbjct 1106554 TTACATCAGTGATCCTGACCAGCGGGAGTTTCTTTTCAAAGCTATTGAAACTGTCCCATG 1106495
Query 59920 CAGTTAAACAAAAAGCAGAATGGGCCATGCAGTGGA-TG--AGTCCTGGAGCATCATTTG 59976
||| ||||| || |||||||| || | |||| || | ||| || || ||||
Sbjct 1106494 T-GTTGCTCAAAAGGCTGAATGGGCAATAAACTGGACTGCAAATCCATCAGTCTCTTTTG 1106436
Query 59977 CACAACGTCTCATAGCTTTTGCATGCGTGGAAGGAATCTTCTTCTCTGGCTCGTTCTGTG 60036
| || | | || || |||||||| || ||||| ||||| ||||| ||||| ||| |
Sbjct 1106435 CCGAAAGATTGATTGCCTTTGCATGTGTTGAAGGTATCTTTTTCTCAGGCTCTTTCGCCG 1106376
Query 60037 CTATTTTCTGGCTCAAAAAGCGTGGCCTCATGCCGGGCCTGAGTTTCTCCAACGAGCTGA 60096
|||| || ||||| |||||||||||||| ||||| || | | |||||| ||||| || |
Sbjct 1106375 CTATCTTTTGGCTTAAAAAGCGTGGCCTGATGCCAGGTTTAACTTTCTCTAACGAACTTA 1106316
Query 60097 TTTCCCGGGACGAGGGCCTCCATCAGGAGTTTGC 60130
| || || || || || | ||| || |||||
Sbjct 1106315 TCTCTCGAGATGAAGGATTACATTGTGATTTTGC 1106282
>seq453
Length=2394413
Score = 122 bits (134), Expect = 1e-22
Identities = 376/574 (66%), Gaps = 7/574 (1%)
Strand=Plus/Minus
Query 59562 TTTCCTATACGGTACCCGGATCTGTGGGCCCTGTATAAGAAAGCGATCGGTTCATTCTGG 59621
|| ||||| ||| || ||| | |||| ||||||||||||| | || ||||||
Sbjct 12305 TTCCCTATTGAGTATCCTGATATTTGGGAAATGTATAAGAAAGCTGAAGCCTCGTTCTGG 12246
Query 59622 TCCGTCGAGGAGATTGACCTCGCCGGAGACCTGAAGGATTGGGACAAGCTCAATTACGAC 59681
| || || ||| ||||| | | |||| | | || |||| ||||| || | ||
Sbjct 12245 ACTGTTGAAGAGGTTGACTTATCTCGAGATTTAACTGACTGGGCTAAGCTTAACGATGAA 12186
Query 59682 GAGCAGCATTTCATCAAGATGGTCCTGGCCTTCTTCGCGGCGAGTGATGGAATTGTGATG 59741
|| | ||||| |||| || |||| |||||| | || || || ||||| |
Sbjct 12185 GAACGTCATTTTATCAGCTATGTGTTGGCATTCTTCTCTGCCTCAGACGGTATTGTAAAT 12126
Query 59742 GAAAATATAGACATGAACTTTTCCAAG-GATGTCCAGATTGCCGAGGCCCGGTCGTTCTA 59800
|||||| ||| | || ||| | ||| |||||||| |||| || || | || ||
Sbjct 12125 GAAAATTTAG-CTGAAAGATTTATTCGTGATATCCAGATTACCGAAGCTCGATGTTTTTA 12067
Query 59801 CGCGTATCAGTCGTTCAACGAGTCTATCCACTCCGAGACGTACTCGCTCATGATCGATAA 59860
| | ||| | ||| | | ||||| |||| |||| || |||| || |
Sbjct 12066 TGGTTTTCAAATTGCGATTGAGAATGTGCACTCTGAGATGTACAGCCTACTGATAGACAC 12007
Query 59861 GTTGGTCAAGGATCCGGAAGAGAAGGCTGGTCTGTTCCGTGCCATAGAGAC-GTCCCCCG 59919
| ||| ||||| || || || ||| ||| || || || || ||||| |
Sbjct 12006 TTACATCAGTGATCCTGACCAGCGGGAGTTTCTTTTCAAAGCTATTGAAACTGTCCCATG 11947
Query 59920 CAGTTAAACAAAAAGCAGAATGGGCCATGCAGTGGA-TG--AGTCCTGGAGCATCATTTG 59976
||| ||||| || |||||||| || | |||| || | ||| || || ||||
Sbjct 11946 T-GTTGCTCAAAAGGCTGAATGGGCAATAAACTGGACTGCAAATCCATCAGTCTCTTTTG 11888
Query 59977 CACAACGTCTCATAGCTTTTGCATGCGTGGAAGGAATCTTCTTCTCTGGCTCGTTCTGTG 60036
| || | | || || |||||||| || ||||| ||||| ||||| ||||| ||| |
Sbjct 11887 CCGAAAGATTGATTGCCTTTGCATGTGTTGAAGGTATCTTTTTCTCAGGCTCTTTCGCCG 11828
Query 60037 CTATTTTCTGGCTCAAAAAGCGTGGCCTCATGCCGGGCCTGAGTTTCTCCAACGAGCTGA 60096
|||| || ||||| |||||||||||||| ||||| || | | |||||| ||||| || |
Sbjct 11827 CTATCTTTTGGCTTAAAAAGCGTGGCCTGATGCCAGGTTTAACTTTCTCTAACGAACTTA 11768
Query 60097 TTTCCCGGGACGAGGGCCTCCATCAGGAGTTTGC 60130
| || || || || || | ||| || |||||
Sbjct 11767 TCTCTCGAGATGAAGGATTACATTGTGATTTTGC 11734
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 548520404945040
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