Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tetranychus_20urticae_20[refseq_20GCF_5F000239435.1_202011-12-20] 641 sequences; 90,828,597 total letters Query= NC_028108.1 Length=171454 Score E Sequences producing significant alignments: (Bits) Value seq468 122 1e-22 seq453 122 1e-22 >seq468 Length=1118636 Score = 122 bits (134), Expect = 1e-22 Identities = 376/574 (66%), Gaps = 7/574 (1%) Strand=Plus/Minus Query 59562 TTTCCTATACGGTACCCGGATCTGTGGGCCCTGTATAAGAAAGCGATCGGTTCATTCTGG 59621 || ||||| ||| || ||| | |||| ||||||||||||| | || |||||| Sbjct 1106853 TTCCCTATTGAGTATCCTGATATTTGGGAAATGTATAAGAAAGCTGAAGCCTCGTTCTGG 1106794 Query 59622 TCCGTCGAGGAGATTGACCTCGCCGGAGACCTGAAGGATTGGGACAAGCTCAATTACGAC 59681 | || || ||| ||||| | | |||| | | || |||| ||||| || | || Sbjct 1106793 ACTGTTGAAGAGGTTGACTTATCTCGAGATTTAACTGACTGGGCTAAGCTTAACGATGAA 1106734 Query 59682 GAGCAGCATTTCATCAAGATGGTCCTGGCCTTCTTCGCGGCGAGTGATGGAATTGTGATG 59741 || | ||||| |||| || |||| |||||| | || || || ||||| | Sbjct 1106733 GAACGTCATTTTATCAGCTATGTGTTGGCATTCTTCTCTGCCTCAGACGGTATTGTAAAT 1106674 Query 59742 GAAAATATAGACATGAACTTTTCCAAG-GATGTCCAGATTGCCGAGGCCCGGTCGTTCTA 59800 |||||| ||| | || ||| | ||| |||||||| |||| || || | || || Sbjct 1106673 GAAAATTTAG-CTGAAAGATTTATTCGTGATATCCAGATTACCGAAGCTCGATGTTTTTA 1106615 Query 59801 CGCGTATCAGTCGTTCAACGAGTCTATCCACTCCGAGACGTACTCGCTCATGATCGATAA 59860 | | ||| | ||| | | ||||| |||| |||| || |||| || | Sbjct 1106614 TGGTTTTCAAATTGCGATTGAGAATGTGCACTCTGAGATGTACAGCCTACTGATAGACAC 1106555 Query 59861 GTTGGTCAAGGATCCGGAAGAGAAGGCTGGTCTGTTCCGTGCCATAGAGAC-GTCCCCCG 59919 | ||| ||||| || || || ||| ||| || || || || ||||| | Sbjct 1106554 TTACATCAGTGATCCTGACCAGCGGGAGTTTCTTTTCAAAGCTATTGAAACTGTCCCATG 1106495 Query 59920 CAGTTAAACAAAAAGCAGAATGGGCCATGCAGTGGA-TG--AGTCCTGGAGCATCATTTG 59976 ||| ||||| || |||||||| || | |||| || | ||| || || |||| Sbjct 1106494 T-GTTGCTCAAAAGGCTGAATGGGCAATAAACTGGACTGCAAATCCATCAGTCTCTTTTG 1106436 Query 59977 CACAACGTCTCATAGCTTTTGCATGCGTGGAAGGAATCTTCTTCTCTGGCTCGTTCTGTG 60036 | || | | || || |||||||| || ||||| ||||| ||||| ||||| ||| | Sbjct 1106435 CCGAAAGATTGATTGCCTTTGCATGTGTTGAAGGTATCTTTTTCTCAGGCTCTTTCGCCG 1106376 Query 60037 CTATTTTCTGGCTCAAAAAGCGTGGCCTCATGCCGGGCCTGAGTTTCTCCAACGAGCTGA 60096 |||| || ||||| |||||||||||||| ||||| || | | |||||| ||||| || | Sbjct 1106375 CTATCTTTTGGCTTAAAAAGCGTGGCCTGATGCCAGGTTTAACTTTCTCTAACGAACTTA 1106316 Query 60097 TTTCCCGGGACGAGGGCCTCCATCAGGAGTTTGC 60130 | || || || || || | ||| || ||||| Sbjct 1106315 TCTCTCGAGATGAAGGATTACATTGTGATTTTGC 1106282 >seq453 Length=2394413 Score = 122 bits (134), Expect = 1e-22 Identities = 376/574 (66%), Gaps = 7/574 (1%) Strand=Plus/Minus Query 59562 TTTCCTATACGGTACCCGGATCTGTGGGCCCTGTATAAGAAAGCGATCGGTTCATTCTGG 59621 || ||||| ||| || ||| | |||| ||||||||||||| | || |||||| Sbjct 12305 TTCCCTATTGAGTATCCTGATATTTGGGAAATGTATAAGAAAGCTGAAGCCTCGTTCTGG 12246 Query 59622 TCCGTCGAGGAGATTGACCTCGCCGGAGACCTGAAGGATTGGGACAAGCTCAATTACGAC 59681 | || || ||| ||||| | | |||| | | || |||| ||||| || | || Sbjct 12245 ACTGTTGAAGAGGTTGACTTATCTCGAGATTTAACTGACTGGGCTAAGCTTAACGATGAA 12186 Query 59682 GAGCAGCATTTCATCAAGATGGTCCTGGCCTTCTTCGCGGCGAGTGATGGAATTGTGATG 59741 || | ||||| |||| || |||| |||||| | || || || ||||| | Sbjct 12185 GAACGTCATTTTATCAGCTATGTGTTGGCATTCTTCTCTGCCTCAGACGGTATTGTAAAT 12126 Query 59742 GAAAATATAGACATGAACTTTTCCAAG-GATGTCCAGATTGCCGAGGCCCGGTCGTTCTA 59800 |||||| ||| | || ||| | ||| |||||||| |||| || || | || || Sbjct 12125 GAAAATTTAG-CTGAAAGATTTATTCGTGATATCCAGATTACCGAAGCTCGATGTTTTTA 12067 Query 59801 CGCGTATCAGTCGTTCAACGAGTCTATCCACTCCGAGACGTACTCGCTCATGATCGATAA 59860 | | ||| | ||| | | ||||| |||| |||| || |||| || | Sbjct 12066 TGGTTTTCAAATTGCGATTGAGAATGTGCACTCTGAGATGTACAGCCTACTGATAGACAC 12007 Query 59861 GTTGGTCAAGGATCCGGAAGAGAAGGCTGGTCTGTTCCGTGCCATAGAGAC-GTCCCCCG 59919 | ||| ||||| || || || ||| ||| || || || || ||||| | Sbjct 12006 TTACATCAGTGATCCTGACCAGCGGGAGTTTCTTTTCAAAGCTATTGAAACTGTCCCATG 11947 Query 59920 CAGTTAAACAAAAAGCAGAATGGGCCATGCAGTGGA-TG--AGTCCTGGAGCATCATTTG 59976 ||| ||||| || |||||||| || | |||| || | ||| || || |||| Sbjct 11946 T-GTTGCTCAAAAGGCTGAATGGGCAATAAACTGGACTGCAAATCCATCAGTCTCTTTTG 11888 Query 59977 CACAACGTCTCATAGCTTTTGCATGCGTGGAAGGAATCTTCTTCTCTGGCTCGTTCTGTG 60036 | || | | || || |||||||| || ||||| ||||| ||||| ||||| ||| | Sbjct 11887 CCGAAAGATTGATTGCCTTTGCATGTGTTGAAGGTATCTTTTTCTCAGGCTCTTTCGCCG 11828 Query 60037 CTATTTTCTGGCTCAAAAAGCGTGGCCTCATGCCGGGCCTGAGTTTCTCCAACGAGCTGA 60096 |||| || ||||| |||||||||||||| ||||| || | | |||||| ||||| || | Sbjct 11827 CTATCTTTTGGCTTAAAAAGCGTGGCCTGATGCCAGGTTTAACTTTCTCTAACGAACTTA 11768 Query 60097 TTTCCCGGGACGAGGGCCTCCATCAGGAGTTTGC 60130 | || || || || || | ||| || ||||| Sbjct 11767 TCTCTCGAGATGAAGGATTACATTGTGATTTTGC 11734 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 548520404945040