Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tetranychus_20urticae_20[refseq_20GCF_5F000239435.1_202011-12-20] 641 sequences; 90,828,597 total letters Query= NC_028112.1 Length=178262 Score E Sequences producing significant alignments: (Bits) Value seq444 163 3e-35 seq468 109 6e-19 seq453 109 6e-19 >seq444 Length=5217058 Score = 163 bits (180), Expect = 3e-35 Identities = 173/228 (76%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 27405 AATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGG 27464 ||||||||| || || || || ||||| || ||||| ||||| ||||||||||| | Sbjct 3542028 AATGCAAATTTTCGTAAAAACTCTTACTGGTAAGACCATTACACTTGAGGTTGAACCTTC 3541969 Query 27465 TGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCA 27524 ||||| |||| ||| |||| || ||||| || ||||| || || || || || ||||| Sbjct 3541968 TGATACTATTGAAAACGTGAAAGCCAAAATCCAAGACAAAGAAGGTATCCCACCTGACCA 3541909 Query 27525 GCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAA 27584 || ||| | || || |||||||| || |||||||| | |||||| || || ||||| Sbjct 3541908 ACAACGTTTGATCTTCGCTGGTAAACAGCTCGAGGACGGTCGTACTCTCAGTGATTATAA 3541849 Query 27585 TGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 | | ||||| ||||| || ||||| | |||||||| ||||| ||||| Sbjct 3541848 TATTCAAAAAGAATCTACCCTTCACTTGGTCTTGCGACTTCGTGGTGG 3541801 Score = 158 bits (174), Expect = 1e-33 Identities = 177/237 (75%), Gaps = 0/237 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 |||||||| || ||||| || || || || || || || || | || ||||| | Sbjct 3541799 ATGCAAATTTTCGTCAAAACCCTCACTGGTAAAACCATCACCTTGGAAGTTGAACCTTCC 3541740 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | ||||| |||| | ||||||||||| || |||||||| ||||| || || || || Sbjct 3541739 GACACCATTGAAAATGTCAAGGCTAAAATCCAAGACAAGGAAGGAATCCCACCTGATCAA 3541680 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 |||||||| || || |||||||| || || ||||||| ||| ||||| | ||||| || Sbjct 3541679 CAGCGTCTCATCTTCGCTGGTAAACAGCTTGAGGATGGTCGAACCCTTTCTGACTACAAC 3541620 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGGACAAGTTTAA 27642 | || || ||||| ||| | ||| |||| || || ||||| ||||| ||| ||||| Sbjct 3541619 ATTCAGAAAGAATCAACTTTACATTTAGTATTACGACTTCGTGGTGGTCAACTTTAA 3541563 Score = 140 bits (154), Expect = 4e-28 Identities = 171/231 (74%), Gaps = 2/231 (1%) Strand=Plus/Minus Query 27403 ATAATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCA 27462 || |||||||| || |||||||| ||||| || || || || || ||||||||||| || Sbjct 3542606 ATCATGCAAATTTTCGTCAAGACTCTTACTGGAAAAACCATCACCCTTGAGGTTGAACCA 3542547 Query 27463 GGTGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGAC 27522 || | |||| |||| | || || || || || |||||||| || || || || || Sbjct 3542546 TCGGACACTATTGAAAATGTTAAAGCCAAGATCCAAGACAAGGAAGGTATCCCACCCGAT 3542487 Query 27523 CAGCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCT-AGCAGACTA 27581 || |||||| | || || |||||||| || || || |||| |||||||| ||| || || Sbjct 3542486 CAACAGCGTTTGATCTTCGCTGGTAAACAGCTTGAAGATGGACGTACCCTGAGC-GATTA 3542428 Query 27582 TAATGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 || | ||||| || || || ||||| | ||||| || ||||| ||||| Sbjct 3542427 CAACATTCAAAAAGAGTCTACCCTTCACTTGGTCTTACGACTTCGTGGTGG 3542377 Score = 132 bits (146), Expect = 5e-26 Identities = 142/188 (76%), Gaps = 0/188 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 |||||||| || || || || || || || || || |||||| | || ||||| | Sbjct 3542375 ATGCAAATTTTCGTTAAAACCCTCACTGGAAAAACCATTACTTTGGAAGTTGAACCTTCC 3542316 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 |||| ||||| ||| | ||||||||||| ||||||||||| || ||||| || ||||| Sbjct 3542315 GATACCATTGAAAACGTCAAGGCTAAAATCCAGGACAAGGAAGGTATTCCCCCCGACCAA 3542256 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 || ||| | || || ||||| || |||||||| |||| ||||| || | || |||||| Sbjct 3542255 CAACGTTTGATCTTCGCTGGAAAACAACTCGAAGATGGACGTACATTATCTGATTATAAT 3542196 Query 27586 GTCCAAAA 27593 ||||||| Sbjct 3542195 ATCCAAAA 3542188 >seq468 Length=1118636 Score = 109 bits (120), Expect = 6e-19 Identities = 369/564 (65%), Gaps = 23/564 (4%) Strand=Plus/Minus Query 64297 TTCCCAATTAGGTACCCTGATTTGTGGGAGCTTTACAAGAAAGCCATCGCAAGTTTCTGG 64356 ||||| ||| ||| |||||| | ||||| | || |||||||| || |||||| Sbjct 1106853 TTCCCTATTGAGTATCCTGATATTTGGGAAATGTATAAGAAAGCTGAAGCCTCGTTCTGG 1106794 Query 64357 ACGGTCGAGGAGGTTGA--TCTCGCCAAGGATCTCAGCGACTGGGAAAACCTAAACTCAC 64414 || || || |||||||| | || | | ||| | | ||||||| || || ||| Sbjct 1106793 ACTGTTGAAGAGGTTGACTTATCTCGA--GATTTAACTGACTGGGCTAAGCTTAACGATG 1106736 Query 64415 AGGAACAGCACTTCATCAAGTTGGTCCTAGCATTCTTC---GCATCAAGTGACGGAATTG 64471 | |||| || || |||| | || | ||||||||| || ||| ||||| |||| Sbjct 1106735 AAGAACGTCATTTTATCAGCTATGTGTTGGCATTCTTCTCTGCCTCA---GACGGTATTG 1106679 Query 64472 TGTTTGAGAATTTGGACCTAAATTTTACAAAGGATGTTCAGATCCCAGAGGCGCGGTCAT 64531 | ||| ||||| | || |||| ||| | ||||| | || || || | | Sbjct 1106678 TAAATGAAAATTTAGCTGAAAGATTTATTCGTGATATCCAGATTACCGAAGCTCGATGTT 1106619 Query 64532 TCTATGCGTATCA----GGGATTTAACGAAAGTATTCATGGCGAGACGTATTCGCTCATG 64587 | |||| | ||| | |||| | ||| || || |||| ||| || || Sbjct 1106618 TTTATGGTTTTCAAATTGCGATTGA--GAATGTG--CACTCTGAGATGTACAGCCTACTG 1106563 Query 64588 ATTGACAAGTTTGTTCGGGATCCTGTCGAGAAGGATGGACTGTTCAGGGCTATAGAGACT 64647 || |||| | | | ||||||| | || ||| || |||| ||||| || ||| Sbjct 1106562 ATAGACACTTACATCAGTGATCCTGACCAGCGGGAGTTTCTTTTCAAAGCTATTGAAACT 1106503 Query 64648 GTACCCGCTGTTACTAAAAAGGCTGAATGGGCCATCCGGTGGA-TG--AATCG-TGGGTC 64703 || || |||| || |||||||||||||||| || |||| || |||| | ||| Sbjct 1106502 GTCCCATGTGTTGCTCAAAAGGCTGAATGGGCAATAAACTGGACTGCAAATCCATCAGTC 1106443 Query 64704 GTCGTTTGGTCAGCGTCTCGCAGCTTTTGCCTGTGTGGAAGGAATTTTCTTTTCTGGGTC 64763 || |||| | | | || ||||| ||||| ||||| || || || || || || Sbjct 1106442 -TCTTTTGCCGAAAGATTGATTGCCTTTGCATGTGTTGAAGGTATCTTTTTCTCAGGCTC 1106384 Query 64764 ATTCTGTTCTATTTTCTGGCTAAAAAAGCGGGGCCTGATGCCAGGTCTGTCGTTTTCGAA 64823 ||| |||| || ||||| |||||||| ||||||||||||||| | | || || || Sbjct 1106383 TTTCGCCGCTATCTTTTGGCTTAAAAAGCGTGGCCTGATGCCAGGTTTAACTTTCTCTAA 1106324 Query 64824 CGAGCTGATCTCTCGGGACGAGGG 64847 ||| || |||||||| || || || Sbjct 1106323 CGAACTTATCTCTCGAGATGAAGG 1106300 >seq453 Length=2394413 Score = 109 bits (120), Expect = 6e-19 Identities = 369/564 (65%), Gaps = 23/564 (4%) Strand=Plus/Minus Query 64297 TTCCCAATTAGGTACCCTGATTTGTGGGAGCTTTACAAGAAAGCCATCGCAAGTTTCTGG 64356 ||||| ||| ||| |||||| | ||||| | || |||||||| || |||||| Sbjct 12305 TTCCCTATTGAGTATCCTGATATTTGGGAAATGTATAAGAAAGCTGAAGCCTCGTTCTGG 12246 Query 64357 ACGGTCGAGGAGGTTGA--TCTCGCCAAGGATCTCAGCGACTGGGAAAACCTAAACTCAC 64414 || || || |||||||| | || | | ||| | | ||||||| || || ||| Sbjct 12245 ACTGTTGAAGAGGTTGACTTATCTCGA--GATTTAACTGACTGGGCTAAGCTTAACGATG 12188 Query 64415 AGGAACAGCACTTCATCAAGTTGGTCCTAGCATTCTTC---GCATCAAGTGACGGAATTG 64471 | |||| || || |||| | || | ||||||||| || ||| ||||| |||| Sbjct 12187 AAGAACGTCATTTTATCAGCTATGTGTTGGCATTCTTCTCTGCCTCA---GACGGTATTG 12131 Query 64472 TGTTTGAGAATTTGGACCTAAATTTTACAAAGGATGTTCAGATCCCAGAGGCGCGGTCAT 64531 | ||| ||||| | || |||| ||| | ||||| | || || || | | Sbjct 12130 TAAATGAAAATTTAGCTGAAAGATTTATTCGTGATATCCAGATTACCGAAGCTCGATGTT 12071 Query 64532 TCTATGCGTATCA----GGGATTTAACGAAAGTATTCATGGCGAGACGTATTCGCTCATG 64587 | |||| | ||| | |||| | ||| || || |||| ||| || || Sbjct 12070 TTTATGGTTTTCAAATTGCGATTGA--GAATGTG--CACTCTGAGATGTACAGCCTACTG 12015 Query 64588 ATTGACAAGTTTGTTCGGGATCCTGTCGAGAAGGATGGACTGTTCAGGGCTATAGAGACT 64647 || |||| | | | ||||||| | || ||| || |||| ||||| || ||| Sbjct 12014 ATAGACACTTACATCAGTGATCCTGACCAGCGGGAGTTTCTTTTCAAAGCTATTGAAACT 11955 Query 64648 GTACCCGCTGTTACTAAAAAGGCTGAATGGGCCATCCGGTGGA-TG--AATCG-TGGGTC 64703 || || |||| || |||||||||||||||| || |||| || |||| | ||| Sbjct 11954 GTCCCATGTGTTGCTCAAAAGGCTGAATGGGCAATAAACTGGACTGCAAATCCATCAGTC 11895 Query 64704 GTCGTTTGGTCAGCGTCTCGCAGCTTTTGCCTGTGTGGAAGGAATTTTCTTTTCTGGGTC 64763 || |||| | | | || ||||| ||||| ||||| || || || || || || Sbjct 11894 -TCTTTTGCCGAAAGATTGATTGCCTTTGCATGTGTTGAAGGTATCTTTTTCTCAGGCTC 11836 Query 64764 ATTCTGTTCTATTTTCTGGCTAAAAAAGCGGGGCCTGATGCCAGGTCTGTCGTTTTCGAA 64823 ||| |||| || ||||| |||||||| ||||||||||||||| | | || || || Sbjct 11835 TTTCGCCGCTATCTTTTGGCTTAAAAAGCGTGGCCTGATGCCAGGTTTAACTTTCTCTAA 11776 Query 64824 CGAGCTGATCTCTCGGGACGAGGG 64847 ||| || |||||||| || || || Sbjct 11775 CGAACTTATCTCTCGAGATGAAGG 11752 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 570305830387920