Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Tetranychus_20urticae_20[refseq_20GCF_5F000239435.1_202011-12-20]
641 sequences; 90,828,597 total letters
Query= NC_028112.1
Length=178262
Score E
Sequences producing significant alignments: (Bits) Value
seq444 163 3e-35
seq468 109 6e-19
seq453 109 6e-19
>seq444
Length=5217058
Score = 163 bits (180), Expect = 3e-35
Identities = 173/228 (76%), Gaps = 0/228 (0%)
Strand=Plus/Minus
Query 27405 AATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGG 27464
||||||||| || || || || ||||| || ||||| ||||| ||||||||||| |
Sbjct 3542028 AATGCAAATTTTCGTAAAAACTCTTACTGGTAAGACCATTACACTTGAGGTTGAACCTTC 3541969
Query 27465 TGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCA 27524
||||| |||| ||| |||| || ||||| || ||||| || || || || || |||||
Sbjct 3541968 TGATACTATTGAAAACGTGAAAGCCAAAATCCAAGACAAAGAAGGTATCCCACCTGACCA 3541909
Query 27525 GCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAA 27584
|| ||| | || || |||||||| || |||||||| | |||||| || || |||||
Sbjct 3541908 ACAACGTTTGATCTTCGCTGGTAAACAGCTCGAGGACGGTCGTACTCTCAGTGATTATAA 3541849
Query 27585 TGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632
| | ||||| ||||| || ||||| | |||||||| ||||| |||||
Sbjct 3541848 TATTCAAAAAGAATCTACCCTTCACTTGGTCTTGCGACTTCGTGGTGG 3541801
Score = 158 bits (174), Expect = 1e-33
Identities = 177/237 (75%), Gaps = 0/237 (0%)
Strand=Plus/Minus
Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465
|||||||| || ||||| || || || || || || || || | || ||||| |
Sbjct 3541799 ATGCAAATTTTCGTCAAAACCCTCACTGGTAAAACCATCACCTTGGAAGTTGAACCTTCC 3541740
Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525
|| | ||||| |||| | ||||||||||| || |||||||| ||||| || || || ||
Sbjct 3541739 GACACCATTGAAAATGTCAAGGCTAAAATCCAAGACAAGGAAGGAATCCCACCTGATCAA 3541680
Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585
|||||||| || || |||||||| || || ||||||| ||| ||||| | ||||| ||
Sbjct 3541679 CAGCGTCTCATCTTCGCTGGTAAACAGCTTGAGGATGGTCGAACCCTTTCTGACTACAAC 3541620
Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGGACAAGTTTAA 27642
| || || ||||| ||| | ||| |||| || || ||||| ||||| ||| |||||
Sbjct 3541619 ATTCAGAAAGAATCAACTTTACATTTAGTATTACGACTTCGTGGTGGTCAACTTTAA 3541563
Score = 140 bits (154), Expect = 4e-28
Identities = 171/231 (74%), Gaps = 2/231 (1%)
Strand=Plus/Minus
Query 27403 ATAATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCA 27462
|| |||||||| || |||||||| ||||| || || || || || ||||||||||| ||
Sbjct 3542606 ATCATGCAAATTTTCGTCAAGACTCTTACTGGAAAAACCATCACCCTTGAGGTTGAACCA 3542547
Query 27463 GGTGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGAC 27522
|| | |||| |||| | || || || || || |||||||| || || || || ||
Sbjct 3542546 TCGGACACTATTGAAAATGTTAAAGCCAAGATCCAAGACAAGGAAGGTATCCCACCCGAT 3542487
Query 27523 CAGCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCT-AGCAGACTA 27581
|| |||||| | || || |||||||| || || || |||| |||||||| ||| || ||
Sbjct 3542486 CAACAGCGTTTGATCTTCGCTGGTAAACAGCTTGAAGATGGACGTACCCTGAGC-GATTA 3542428
Query 27582 TAATGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632
|| | ||||| || || || ||||| | ||||| || ||||| |||||
Sbjct 3542427 CAACATTCAAAAAGAGTCTACCCTTCACTTGGTCTTACGACTTCGTGGTGG 3542377
Score = 132 bits (146), Expect = 5e-26
Identities = 142/188 (76%), Gaps = 0/188 (0%)
Strand=Plus/Minus
Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465
|||||||| || || || || || || || || || |||||| | || ||||| |
Sbjct 3542375 ATGCAAATTTTCGTTAAAACCCTCACTGGAAAAACCATTACTTTGGAAGTTGAACCTTCC 3542316
Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525
|||| ||||| ||| | ||||||||||| ||||||||||| || ||||| || |||||
Sbjct 3542315 GATACCATTGAAAACGTCAAGGCTAAAATCCAGGACAAGGAAGGTATTCCCCCCGACCAA 3542256
Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585
|| ||| | || || ||||| || |||||||| |||| ||||| || | || ||||||
Sbjct 3542255 CAACGTTTGATCTTCGCTGGAAAACAACTCGAAGATGGACGTACATTATCTGATTATAAT 3542196
Query 27586 GTCCAAAA 27593
|||||||
Sbjct 3542195 ATCCAAAA 3542188
>seq468
Length=1118636
Score = 109 bits (120), Expect = 6e-19
Identities = 369/564 (65%), Gaps = 23/564 (4%)
Strand=Plus/Minus
Query 64297 TTCCCAATTAGGTACCCTGATTTGTGGGAGCTTTACAAGAAAGCCATCGCAAGTTTCTGG 64356
||||| ||| ||| |||||| | ||||| | || |||||||| || ||||||
Sbjct 1106853 TTCCCTATTGAGTATCCTGATATTTGGGAAATGTATAAGAAAGCTGAAGCCTCGTTCTGG 1106794
Query 64357 ACGGTCGAGGAGGTTGA--TCTCGCCAAGGATCTCAGCGACTGGGAAAACCTAAACTCAC 64414
|| || || |||||||| | || | | ||| | | ||||||| || || |||
Sbjct 1106793 ACTGTTGAAGAGGTTGACTTATCTCGA--GATTTAACTGACTGGGCTAAGCTTAACGATG 1106736
Query 64415 AGGAACAGCACTTCATCAAGTTGGTCCTAGCATTCTTC---GCATCAAGTGACGGAATTG 64471
| |||| || || |||| | || | ||||||||| || ||| ||||| ||||
Sbjct 1106735 AAGAACGTCATTTTATCAGCTATGTGTTGGCATTCTTCTCTGCCTCA---GACGGTATTG 1106679
Query 64472 TGTTTGAGAATTTGGACCTAAATTTTACAAAGGATGTTCAGATCCCAGAGGCGCGGTCAT 64531
| ||| ||||| | || |||| ||| | ||||| | || || || | |
Sbjct 1106678 TAAATGAAAATTTAGCTGAAAGATTTATTCGTGATATCCAGATTACCGAAGCTCGATGTT 1106619
Query 64532 TCTATGCGTATCA----GGGATTTAACGAAAGTATTCATGGCGAGACGTATTCGCTCATG 64587
| |||| | ||| | |||| | ||| || || |||| ||| || ||
Sbjct 1106618 TTTATGGTTTTCAAATTGCGATTGA--GAATGTG--CACTCTGAGATGTACAGCCTACTG 1106563
Query 64588 ATTGACAAGTTTGTTCGGGATCCTGTCGAGAAGGATGGACTGTTCAGGGCTATAGAGACT 64647
|| |||| | | | ||||||| | || ||| || |||| ||||| || |||
Sbjct 1106562 ATAGACACTTACATCAGTGATCCTGACCAGCGGGAGTTTCTTTTCAAAGCTATTGAAACT 1106503
Query 64648 GTACCCGCTGTTACTAAAAAGGCTGAATGGGCCATCCGGTGGA-TG--AATCG-TGGGTC 64703
|| || |||| || |||||||||||||||| || |||| || |||| | |||
Sbjct 1106502 GTCCCATGTGTTGCTCAAAAGGCTGAATGGGCAATAAACTGGACTGCAAATCCATCAGTC 1106443
Query 64704 GTCGTTTGGTCAGCGTCTCGCAGCTTTTGCCTGTGTGGAAGGAATTTTCTTTTCTGGGTC 64763
|| |||| | | | || ||||| ||||| ||||| || || || || || ||
Sbjct 1106442 -TCTTTTGCCGAAAGATTGATTGCCTTTGCATGTGTTGAAGGTATCTTTTTCTCAGGCTC 1106384
Query 64764 ATTCTGTTCTATTTTCTGGCTAAAAAAGCGGGGCCTGATGCCAGGTCTGTCGTTTTCGAA 64823
||| |||| || ||||| |||||||| ||||||||||||||| | | || || ||
Sbjct 1106383 TTTCGCCGCTATCTTTTGGCTTAAAAAGCGTGGCCTGATGCCAGGTTTAACTTTCTCTAA 1106324
Query 64824 CGAGCTGATCTCTCGGGACGAGGG 64847
||| || |||||||| || || ||
Sbjct 1106323 CGAACTTATCTCTCGAGATGAAGG 1106300
>seq453
Length=2394413
Score = 109 bits (120), Expect = 6e-19
Identities = 369/564 (65%), Gaps = 23/564 (4%)
Strand=Plus/Minus
Query 64297 TTCCCAATTAGGTACCCTGATTTGTGGGAGCTTTACAAGAAAGCCATCGCAAGTTTCTGG 64356
||||| ||| ||| |||||| | ||||| | || |||||||| || ||||||
Sbjct 12305 TTCCCTATTGAGTATCCTGATATTTGGGAAATGTATAAGAAAGCTGAAGCCTCGTTCTGG 12246
Query 64357 ACGGTCGAGGAGGTTGA--TCTCGCCAAGGATCTCAGCGACTGGGAAAACCTAAACTCAC 64414
|| || || |||||||| | || | | ||| | | ||||||| || || |||
Sbjct 12245 ACTGTTGAAGAGGTTGACTTATCTCGA--GATTTAACTGACTGGGCTAAGCTTAACGATG 12188
Query 64415 AGGAACAGCACTTCATCAAGTTGGTCCTAGCATTCTTC---GCATCAAGTGACGGAATTG 64471
| |||| || || |||| | || | ||||||||| || ||| ||||| ||||
Sbjct 12187 AAGAACGTCATTTTATCAGCTATGTGTTGGCATTCTTCTCTGCCTCA---GACGGTATTG 12131
Query 64472 TGTTTGAGAATTTGGACCTAAATTTTACAAAGGATGTTCAGATCCCAGAGGCGCGGTCAT 64531
| ||| ||||| | || |||| ||| | ||||| | || || || | |
Sbjct 12130 TAAATGAAAATTTAGCTGAAAGATTTATTCGTGATATCCAGATTACCGAAGCTCGATGTT 12071
Query 64532 TCTATGCGTATCA----GGGATTTAACGAAAGTATTCATGGCGAGACGTATTCGCTCATG 64587
| |||| | ||| | |||| | ||| || || |||| ||| || ||
Sbjct 12070 TTTATGGTTTTCAAATTGCGATTGA--GAATGTG--CACTCTGAGATGTACAGCCTACTG 12015
Query 64588 ATTGACAAGTTTGTTCGGGATCCTGTCGAGAAGGATGGACTGTTCAGGGCTATAGAGACT 64647
|| |||| | | | ||||||| | || ||| || |||| ||||| || |||
Sbjct 12014 ATAGACACTTACATCAGTGATCCTGACCAGCGGGAGTTTCTTTTCAAAGCTATTGAAACT 11955
Query 64648 GTACCCGCTGTTACTAAAAAGGCTGAATGGGCCATCCGGTGGA-TG--AATCG-TGGGTC 64703
|| || |||| || |||||||||||||||| || |||| || |||| | |||
Sbjct 11954 GTCCCATGTGTTGCTCAAAAGGCTGAATGGGCAATAAACTGGACTGCAAATCCATCAGTC 11895
Query 64704 GTCGTTTGGTCAGCGTCTCGCAGCTTTTGCCTGTGTGGAAGGAATTTTCTTTTCTGGGTC 64763
|| |||| | | | || ||||| ||||| ||||| || || || || || ||
Sbjct 11894 -TCTTTTGCCGAAAGATTGATTGCCTTTGCATGTGTTGAAGGTATCTTTTTCTCAGGCTC 11836
Query 64764 ATTCTGTTCTATTTTCTGGCTAAAAAAGCGGGGCCTGATGCCAGGTCTGTCGTTTTCGAA 64823
||| |||| || ||||| |||||||| ||||||||||||||| | | || || ||
Sbjct 11835 TTTCGCCGCTATCTTTTGGCTTAAAAAGCGTGGCCTGATGCCAGGTTTAACTTTCTCTAA 11776
Query 64824 CGAGCTGATCTCTCGGGACGAGGG 64847
||| || |||||||| || || ||
Sbjct 11775 CGAACTTATCTCTCGAGATGAAGG 11752
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 570305830387920
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