Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tetranychus_20urticae_20[refseq_20GCF_5F000239435.1_202011-12-20] 641 sequences; 90,828,597 total letters Query= NC_028238.1 Length=188534 Score E Sequences producing significant alignments: (Bits) Value seq448 118 1e-21 seq451 87.8 2e-12 >seq448 Length=3678511 Score = 118 bits (130), Expect = 1e-21 Identities = 170/237 (72%), Gaps = 2/237 (1%) Strand=Plus/Minus Query 89154 ATTTACACCGATTCAGACGAATGGTTTACATGGAAAGAATTATTCGATCCTGTCTTGCAT 89213 |||| ||| ||| | ||||||| | |||||| || | | ||||||||| ||||| Sbjct 3039004 ATTTTCACTGATGATCAAGAATGGTCCTCTTGGAAACAAATGTCCGATCCTGTTTTGCAC 3038945 Query 89214 ATAGAACTTAGGAGGTGGGCTGATATATTTATTATCGCGCCACTAACGGCTAATACTCTA 89273 || ||||| | | ||||||||||| | | || | ||| | ||||||||| || Sbjct 3038944 ATTGAACTCCGTAAATGGGCTGATATTATGTTGATTTCTCCATTGGATGCTAATACTTTA 3038885 Query 89274 GCGAAGATAGCTAATGGTATATGCGACAACTTACTAACTTCTATAGTTAGGGCATGGGAT 89333 || || || || |||||| || || |||||| |||||| ||||| | || |||||| Sbjct 3038884 GCCAAAATCTCTTCTGGTATTTGTGATAACTTATTAACTTGTATAGCCCGTGCCTGGGAT 3038825 Query 89334 ATATCAAAGCCCCTTATT-TTTTGTCCTGCCATGAATACTCTAATGTGGGAACATCC 89389 | |||||| ||||| |||||||| | ||||| || | |||||||||||||| Sbjct 3038824 CTGCAAAAGCCT-TTATTATTTTGTCCATCTATGAACACATTCATGTGGGAACATCC 3038769 >seq451 Length=2993488 Score = 87.8 bits (96), Expect = 2e-12 Identities = 132/188 (70%), Gaps = 0/188 (0%) Strand=Plus/Minus Query 22647 TCTGGATGCGCTATTTTTTCAAATATAAGTTGTGCTACTCTATCGCCCTTATTTACGTAA 22706 ||||||| || ||| |||| | |||||||| || | ||| || || || ||||| | | Sbjct 1199949 TCTGGATATGCGATTCTTTCGCAGATAAGTTGAGCGATTCTGTCTCCTTTGTTTACTTGA 1199890 Query 22707 AATACATCCTTACTAAAATTAAATAACAATATACCTATATTTCCCCTGTAATCTCTATCT 22766 || | || | | |||||| ||||| | | || | |||||| | |||||| || Sbjct 1199889 AACTCTTCGTCTCCAAAATTGAATAAGATAACTCCAACATTTCCTCGATAATCTGCGTCG 1199830 Query 22767 ATCACACCCGCGCCTACATCGATAAAATGATTACATGCCAATCCCGATCTAGGAGATATT 22826 | ||||| || |||||||||||| |||| || || ||||| |||| || | ||| Sbjct 1199829 ACAACACCAGCTCCTACATCGATAGAATGTTTGAGAGCTAATCCGGATCGTGGCGCGATT 1199770 Query 22827 CTTCCATA 22834 ||||| || Sbjct 1199769 CTTCCGTA 1199762 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 603175967013840