Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Tetranychus_20urticae_20[refseq_20GCF_5F000239435.1_202011-12-20]
641 sequences; 90,828,597 total letters
Query= NC_028636.1
Length=135952
Score E
Sequences producing significant alignments: (Bits) Value
seq444 141 8e-29
seq453 129 5e-25
seq476 125 6e-24
>seq444
Length=5217058
Score = 141 bits (156), Expect = 8e-29
Identities = 170/231 (74%), Gaps = 0/231 (0%)
Strand=Plus/Minus
Query 26987 CATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTC 27046
|||||| || || || || ||||| || || || | || || ||||| || ||||| ||
Sbjct 3542604 CATGCAAATTTTCGTCAAGACTCTTACTGGAAAAACCATCACCCTTGAGGTTGAACCATC 3542545
Query 27047 CGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCA 27106
||| | ||||| | || ||| || || |||||||| ||||| || |||||||||||
Sbjct 3542544 GGACACTATTGAAAATGTTAAAGCCAAGATCCAAGACAAGGAAGGTATCCCACCCGATCA 3542485
Query 27107 ACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAA 27166
||||||||| || | ||| || ||||| | ||||| | ||| | |||||||||
Sbjct 3542484 ACAGCGTTTGATCTTCGCTGGTAAACAGCTTGAAGATGGACGTACCCTGAGCGATTACAA 3542425
Query 27167 CATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217
||||||||| ||||| ||| | || ||||| || || | || ||||| ||
Sbjct 3542424 CATTCAAAAAGAGTCTACCCTTCACTTGGTCTTACGACTTCGTGGTGGTAT 3542374
Score = 136 bits (150), Expect = 3e-27
Identities = 168/230 (73%), Gaps = 0/230 (0%)
Strand=Plus/Minus
Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047
||||| || || ||||||||||| || || ||| | ||||| ||||| || ||||| ||
Sbjct 3542027 ATGCAAATTTTCGTAAAAACTCTTACTGGTAAGACCATTACACTTGAGGTTGAACCTTCT 3541968
Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107
|| | ||||| | || ||| ||||| |||||||||||||| || ||||| || |||
Sbjct 3541967 GATACTATTGAAAACGTGAAAGCCAAAATCCAAGACAAAGAAGGTATCCCACCTGACCAA 3541908
Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167
|| ||||| || | ||| || ||||| | || ||| || || | ||||| ||
Sbjct 3541907 CAACGTTTGATCTTCGCTGGTAAACAGCTCGAGGACGGTCGTACTCTCAGTGATTATAAT 3541848
Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217
|||||||| || || ||| | || ||||| ||||| | || ||||| ||
Sbjct 3541847 ATTCAAAAAGAATCTACCCTTCACTTGGTCTTGCGACTTCGTGGTGGTAT 3541798
Score = 134 bits (148), Expect = 1e-26
Identities = 166/227 (73%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047
||||| || || || ||||| || || || || | || || | ||||| ||||| |||
Sbjct 3541799 ATGCAAATTTTCGTCAAAACCCTCACTGGTAAAACCATCACCTTGGAAGTTGAACCTTCC 3541740
Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107
||| | ||||| | ||||| ||||| |||||||| ||||| || ||||| ||||||
Sbjct 3541739 GACACCATTGAAAATGTCAAGGCTAAAATCCAAGACAAGGAAGGAATCCCACCTGATCAA 3541680
Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167
|||||| | || | ||| || ||||| | || || || ||| |||| || ||||||
Sbjct 3541679 CAGCGTCTCATCTTCGCTGGTAAACAGCTTGAGGATGGTCGAACCCTTTCTGACTACAAC 3541620
Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGG 27214
||||| || || || || |||||||| || || || | || |||||
Sbjct 3541619 ATTCAGAAAGAATCAACTTTACATTTAGTATTACGACTTCGTGGTGG 3541573
>seq453
Length=2394413
Score = 129 bits (142), Expect = 5e-25
Identities = 168/232 (72%), Gaps = 8/232 (3%)
Strand=Plus/Minus
Query 135527 ATGCGCATGTATTGGGCAAAAAAGATATTGGAATGGTCTGCATCGCCTGCAGAGGCGCTA 135586
||| | ||||||||||| ||||||||| | |||||| | ||| || | ||| || ||
Sbjct 2274783 ATGAGAATGTATTGGGCTAAAAAGATACTAGAATGGAGTAAATCTCCGGAAGAAGCACTG 2274724
Query 135587 CAACACGCAATATTTTTTAATGATTACTACAGTTTAGATGGACGCGATTCAAATGGCTAC 135646
|| ||| || | ||| ||||| | | |||||||| |||||| ||||||| | |
Sbjct 2274723 GAAATCGCTATCTATTTAAATGACAAATTTGAATTAGATGGTCGCGATCCAAATGGTTTC 2274664
Query 135647 GTAGGTTGTATGTGGTCTATTTGCGGTGTACACGATCAAGGATG----GAAGGAGCGCAA 135702
||||| ||| | ||||| || | ||| |||| || |||||||| ||| |||||
Sbjct 2274663 GTAGGCTGTCTCTGGTCCGTTGGGGGTATACATGACCAAGGATGGGGTGAAAGAGCG--- 2274607
Query 135703 AGTGTTTGGCAAGATTCGCTATATGAACTATGACGGTTGTACAAGAAAATTT 135754
| ||||| || || || || ||||| ||||| ||||| | ||||||||||
Sbjct 2274606 -ATCTTTGGAAAAATACGATACATGAATTATGAAGGTTGCAAAAGAAAATTT 2274556
>seq476
Length=723144
Score = 125 bits (138), Expect = 6e-24
Identities = 306/459 (67%), Gaps = 36/459 (8%)
Strand=Plus/Minus
Query 135314 CGCGAATTGGCGGACAATTTTTGTTATTATAA--CAAACATTATGATTGCATAGAAGGTG 135371
|| |||||||| ||||| || || | |||||| | ||| ||||||| || ||||||
Sbjct 1970 CGTGAATTGGCTGACAACTTCTGCTTTTATAATCCTAAC--TATGATTCACTAAAAGGTG 1913
Query 135372 CTCCGGCATGGGCGCAACAAACTTTGCACGCTCACGCCTCTGATCGCAGAGA-------- 135423
|||||| |||||| ||| ||||| | | | ||| ||| | |||
Sbjct 1912 CTCCGGAATGGGCTCAAAAAACTCTTAATGATCA---------TCGAAAAGATAAACGTC 1862
Query 135424 CTTTTGT-TACACGCGCGAGCAATGGGACCAAG-CGTTGA--CGCATGACCCGTTGTGGA 135479
||| ||| ||||| || || | ||| || | | ||||||| || ||||||
Sbjct 1861 CTTATGTGTACACTA---AGAAAGAGTTTGAAGACGGTAAAACGCATGATCCTCTGTGGA 1805
Query 135480 ACGCGGCACAACGGCAGCTTAAGCGAGAAGGCAAAATGCACGGATTTATGCGCATGTATT 135539
| || || ||| | || || | ||| | || || | ||| | |||||||
Sbjct 1804 ATGCTTGTCAGATGCAATTGGTTCGCGATGCTAAACTTCATGGTTACATGAGAATGTATT 1745
Query 135540 GGGCAAAAAAGATATTGGAATGGTCTGCATCGCCTGCAGAGGCGCTACAACACGCAATAT 135599
|||| ||||||||| | |||||| | ||| || | ||| || || || ||| || |
Sbjct 1744 GGGCTAAAAAGATACTTGAATGGAGTAAATCTCCCGAAGAAGCACTGGAAATCGCTATCT 1685
Query 135600 TTTTTAATGATTACTACAGTTTAGATGGACGCGATTCAAATGGCTACGTAGGTTGTATGT 135659
||| ||||| | | | ||||||| || ||| ||||||| | |||||| ||| | |
Sbjct 1684 ATTTAAATGACAATTTCGAACTAGATGGTCGTGATCCAAATGGTTTCGTAGGCTGTCTCT 1625
Query 135660 GGTCTATTTGCGGTGTACACGATCAAGGATG----GAAGGAGCGCAAAGTGTTTGGCAAG 135715
|||| || | ||| |||| || |||||||| ||| ||||| | ||||| ||
Sbjct 1624 GGTCCGTTGGGGGTATACATGACCAAGGATGGGGTGAAAGAGCG----ATCTTTGGAAAA 1569
Query 135716 ATTCGCTATATGAACTATGACGGTTGTACAAGAAAATTT 135754
|| || || ||||| ||||| ||||| | ||||||||||
Sbjct 1568 ATACGATACATGAATTATGAAGGTTGCAAAAGAAAATTT 1530
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 434914915216320
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |