Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tetranychus_20urticae_20[refseq_20GCF_5F000239435.1_202011-12-20] 641 sequences; 90,828,597 total letters Query= NC_028636.1 Length=135952 Score E Sequences producing significant alignments: (Bits) Value seq444 141 8e-29 seq453 129 5e-25 seq476 125 6e-24 >seq444 Length=5217058 Score = 141 bits (156), Expect = 8e-29 Identities = 170/231 (74%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 26987 CATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTC 27046 |||||| || || || || ||||| || || || | || || ||||| || ||||| || Sbjct 3542604 CATGCAAATTTTCGTCAAGACTCTTACTGGAAAAACCATCACCCTTGAGGTTGAACCATC 3542545 Query 27047 CGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCA 27106 ||| | ||||| | || ||| || || |||||||| ||||| || ||||||||||| Sbjct 3542544 GGACACTATTGAAAATGTTAAAGCCAAGATCCAAGACAAGGAAGGTATCCCACCCGATCA 3542485 Query 27107 ACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAA 27166 ||||||||| || | ||| || ||||| | ||||| | ||| | ||||||||| Sbjct 3542484 ACAGCGTTTGATCTTCGCTGGTAAACAGCTTGAAGATGGACGTACCCTGAGCGATTACAA 3542425 Query 27167 CATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 ||||||||| ||||| ||| | || ||||| || || | || ||||| || Sbjct 3542424 CATTCAAAAAGAGTCTACCCTTCACTTGGTCTTACGACTTCGTGGTGGTAT 3542374 Score = 136 bits (150), Expect = 3e-27 Identities = 168/230 (73%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 ||||| || || ||||||||||| || || ||| | ||||| ||||| || ||||| || Sbjct 3542027 ATGCAAATTTTCGTAAAAACTCTTACTGGTAAGACCATTACACTTGAGGTTGAACCTTCT 3541968 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 || | ||||| | || ||| ||||| |||||||||||||| || ||||| || ||| Sbjct 3541967 GATACTATTGAAAACGTGAAAGCCAAAATCCAAGACAAAGAAGGTATCCCACCTGACCAA 3541908 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 || ||||| || | ||| || ||||| | || ||| || || | ||||| || Sbjct 3541907 CAACGTTTGATCTTCGCTGGTAAACAGCTCGAGGACGGTCGTACTCTCAGTGATTATAAT 3541848 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 |||||||| || || ||| | || ||||| ||||| | || ||||| || Sbjct 3541847 ATTCAAAAAGAATCTACCCTTCACTTGGTCTTGCGACTTCGTGGTGGTAT 3541798 Score = 134 bits (148), Expect = 1e-26 Identities = 166/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 ||||| || || || ||||| || || || || | || || | ||||| ||||| ||| Sbjct 3541799 ATGCAAATTTTCGTCAAAACCCTCACTGGTAAAACCATCACCTTGGAAGTTGAACCTTCC 3541740 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | ||||| | ||||| ||||| |||||||| ||||| || ||||| |||||| Sbjct 3541739 GACACCATTGAAAATGTCAAGGCTAAAATCCAAGACAAGGAAGGAATCCCACCTGATCAA 3541680 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 |||||| | || | ||| || ||||| | || || || ||| |||| || |||||| Sbjct 3541679 CAGCGTCTCATCTTCGCTGGTAAACAGCTTGAGGATGGTCGAACCCTTTCTGACTACAAC 3541620 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGG 27214 ||||| || || || || |||||||| || || || | || ||||| Sbjct 3541619 ATTCAGAAAGAATCAACTTTACATTTAGTATTACGACTTCGTGGTGG 3541573 >seq453 Length=2394413 Score = 129 bits (142), Expect = 5e-25 Identities = 168/232 (72%), Gaps = 8/232 (3%) Strand=Plus/Minus Query 135527 ATGCGCATGTATTGGGCAAAAAAGATATTGGAATGGTCTGCATCGCCTGCAGAGGCGCTA 135586 ||| | ||||||||||| ||||||||| | |||||| | ||| || | ||| || || Sbjct 2274783 ATGAGAATGTATTGGGCTAAAAAGATACTAGAATGGAGTAAATCTCCGGAAGAAGCACTG 2274724 Query 135587 CAACACGCAATATTTTTTAATGATTACTACAGTTTAGATGGACGCGATTCAAATGGCTAC 135646 || ||| || | ||| ||||| | | |||||||| |||||| ||||||| | | Sbjct 2274723 GAAATCGCTATCTATTTAAATGACAAATTTGAATTAGATGGTCGCGATCCAAATGGTTTC 2274664 Query 135647 GTAGGTTGTATGTGGTCTATTTGCGGTGTACACGATCAAGGATG----GAAGGAGCGCAA 135702 ||||| ||| | ||||| || | ||| |||| || |||||||| ||| ||||| Sbjct 2274663 GTAGGCTGTCTCTGGTCCGTTGGGGGTATACATGACCAAGGATGGGGTGAAAGAGCG--- 2274607 Query 135703 AGTGTTTGGCAAGATTCGCTATATGAACTATGACGGTTGTACAAGAAAATTT 135754 | ||||| || || || || ||||| ||||| ||||| | |||||||||| Sbjct 2274606 -ATCTTTGGAAAAATACGATACATGAATTATGAAGGTTGCAAAAGAAAATTT 2274556 >seq476 Length=723144 Score = 125 bits (138), Expect = 6e-24 Identities = 306/459 (67%), Gaps = 36/459 (8%) Strand=Plus/Minus Query 135314 CGCGAATTGGCGGACAATTTTTGTTATTATAA--CAAACATTATGATTGCATAGAAGGTG 135371 || |||||||| ||||| || || | |||||| | ||| ||||||| || |||||| Sbjct 1970 CGTGAATTGGCTGACAACTTCTGCTTTTATAATCCTAAC--TATGATTCACTAAAAGGTG 1913 Query 135372 CTCCGGCATGGGCGCAACAAACTTTGCACGCTCACGCCTCTGATCGCAGAGA-------- 135423 |||||| |||||| ||| ||||| | | | ||| ||| | ||| Sbjct 1912 CTCCGGAATGGGCTCAAAAAACTCTTAATGATCA---------TCGAAAAGATAAACGTC 1862 Query 135424 CTTTTGT-TACACGCGCGAGCAATGGGACCAAG-CGTTGA--CGCATGACCCGTTGTGGA 135479 ||| ||| ||||| || || | ||| || | | ||||||| || |||||| Sbjct 1861 CTTATGTGTACACTA---AGAAAGAGTTTGAAGACGGTAAAACGCATGATCCTCTGTGGA 1805 Query 135480 ACGCGGCACAACGGCAGCTTAAGCGAGAAGGCAAAATGCACGGATTTATGCGCATGTATT 135539 | || || ||| | || || | ||| | || || | ||| | ||||||| Sbjct 1804 ATGCTTGTCAGATGCAATTGGTTCGCGATGCTAAACTTCATGGTTACATGAGAATGTATT 1745 Query 135540 GGGCAAAAAAGATATTGGAATGGTCTGCATCGCCTGCAGAGGCGCTACAACACGCAATAT 135599 |||| ||||||||| | |||||| | ||| || | ||| || || || ||| || | Sbjct 1744 GGGCTAAAAAGATACTTGAATGGAGTAAATCTCCCGAAGAAGCACTGGAAATCGCTATCT 1685 Query 135600 TTTTTAATGATTACTACAGTTTAGATGGACGCGATTCAAATGGCTACGTAGGTTGTATGT 135659 ||| ||||| | | | ||||||| || ||| ||||||| | |||||| ||| | | Sbjct 1684 ATTTAAATGACAATTTCGAACTAGATGGTCGTGATCCAAATGGTTTCGTAGGCTGTCTCT 1625 Query 135660 GGTCTATTTGCGGTGTACACGATCAAGGATG----GAAGGAGCGCAAAGTGTTTGGCAAG 135715 |||| || | ||| |||| || |||||||| ||| ||||| | ||||| || Sbjct 1624 GGTCCGTTGGGGGTATACATGACCAAGGATGGGGTGAAAGAGCG----ATCTTTGGAAAA 1569 Query 135716 ATTCGCTATATGAACTATGACGGTTGTACAAGAAAATTT 135754 || || || ||||| ||||| ||||| | |||||||||| Sbjct 1568 ATACGATACATGAATTATGAAGGTTGCAAAAGAAAATTT 1530 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 434914915216320