Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tetranychus_20urticae_20[refseq_20GCF_5F000239435.1_202011-12-20] 641 sequences; 90,828,597 total letters Query= NC_029692.1 Length=362276 Score E Sequences producing significant alignments: (Bits) Value seq444 170 4e-37 >seq444 Length=5217058 Score = 170 bits (188), Expect = 4e-37 Identities = 171/222 (77%), Gaps = 0/222 (0%) Strand=Plus/Plus Query 210893 ACGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGT 210952 |||||||| || ||| | |||||| || ||||||||||| ||||| ||||| ||||| Sbjct 3542382 ACGAAGTCGTAAGACCAAGTGAAGGGTAGACTCTTTTTGAATGTTGTAATCGCTCAGGGT 3542441 Query 210953 CCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCC 211012 | ||||||||| ||||| || || |||||||| | || ||||| || || || | || Sbjct 3542442 ACGTCCATCTTCAAGCTGTTTACCAGCGAAGATCAAACGCTGTTGATCGGGTGGGATACC 3542501 Query 211013 TTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAG 211072 ||||||||| |||||||| ||| || ||||| || ||||| || ||||||||| || Sbjct 3542502 TTCCTTGTCTTGGATCTTGGCTTTAACATTTTCAATAGTGTCCGATGGTTCAACCTCAAG 3542561 Query 211073 AGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 ||||| || ||||| || |||||||| || || | ||||| Sbjct 3542562 GGTGATGGTTTTTCCAGTAAGAGTCTTGACGAAAATTTGCAT 3542603 Score = 154 bits (170), Expect = 3e-32 Identities = 168/223 (75%), Gaps = 0/223 (0%) Strand=Plus/Plus Query 210893 ACGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGT 210952 |||||||| | ||| | |||||| || || |||||||| || |||||||| || || Sbjct 3541806 ACGAAGTCGCAAGACCAAGTGAAGGGTAGATTCTTTTTGAATATTATAATCACTGAGAGT 3541865 Query 210953 CCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCC 211012 | || || || ||||| || || |||||||| | |||||||||||||| || | || Sbjct 3541866 ACGACCGTCCTCGAGCTGTTTACCAGCGAAGATCAAACGTTGTTGGTCAGGTGGGATACC 3541925 Query 211013 TTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAG 211072 ||| ||||| ||||| || |||||||||||| || || ||||| ||||||||| || Sbjct 3541926 TTCTTTGTCTTGGATTTTGGCTTTCACGTTTTCAATAGTATCAGAAGGTTCAACCTCAAG 3541985 Query 211073 AGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCATT 211115 || || ||||| || || ||||| ||||| || | |||||| Sbjct 3541986 TGTAATGGTCTTACCAGTAAGAGTTTTTACGAAAATTTGCATT 3542028 Score = 136 bits (150), Expect = 9e-27 Identities = 144/190 (76%), Gaps = 0/190 (0%) Strand=Plus/Plus Query 210925 CTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCCAGCTGCTTGCCTGCGAAGA 210984 |||||||||| |||||||| | | || | ||||||||| || || || || ||||||| Sbjct 3542186 CTTTTTGGATATTATAATCAGATAATGTACGTCCATCTTCGAGTTGTTTTCCAGCGAAGA 3542245 Query 210985 TAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTTTGTTTCACGTTTT 211044 | | ||||||||||| || |||| ||||||||||||||||| || || ||||||| Sbjct 3542246 TCAAACGTTGTTGGTCGGGGGGAATACCTTCCTTGTCCTGGATTTTAGCCTTGACGTTTT 3542305 Query 211045 CGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGTGAGAGTCTTTACAA 211104 | ||||| || || |||||| || | ||| || || ||||| ||||| || || || | Sbjct 3542306 CAATGGTATCGGAAGGTTCAACTTCCAAAGTAATGGTTTTTCCAGTGAGGGTTTTAACGA 3542365 Query 211105 ACACCTGCAT 211114 | | ||||| Sbjct 3542366 AAATTTGCAT 3542375 Score = 134 bits (148), Expect = 3e-26 Identities = 163/222 (73%), Gaps = 0/222 (0%) Strand=Plus/Plus Query 210893 ACGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGT 210952 |||||||| || || | || | ||| || ||||| || ||||| || || | |||||| Sbjct 3541578 ACGAAGTCGTAATACTAAATGTAAAGTTGATTCTTTCTGAATGTTGTAGTCAGAAAGGGT 3541637 Query 210953 CCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCC 211012 | ||||| || ||||| || || |||||||| || || ||||| ||||| || | ||| Sbjct 3541638 TCGACCATCCTCAAGCTGTTTACCAGCGAAGATGAGACGCTGTTGATCAGGTGGGATTCC 3541697 Query 211013 TTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAG 211072 ||||||||| ||||| || || || ||||| |||||||| || |||||| || | Sbjct 3541698 TTCCTTGTCTTGGATTTTAGCCTTGACATTTTCAATGGTGTCGGAAGGTTCAACTTCCAA 3541757 Query 211073 AGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 ||||| || || || ||||| || || || || | ||||| Sbjct 3541758 GGTGATGGTTTTACCAGTGAGGGTTTTGACGAAAATTTGCAT 3541799 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1159142480101965