Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Tetranychus_20urticae_20[refseq_20GCF_5F000239435.1_202011-12-20]
641 sequences; 90,828,597 total letters
Query= NC_030230.1
Length=372707
Score E
Sequences producing significant alignments: (Bits) Value
seq444 145 2e-29
seq641 96.9 8e-15
>seq444
Length=5217058
Score = 145 bits (160), Expect = 2e-29
Identities = 168/224 (75%), Gaps = 2/224 (1%)
Strand=Plus/Plus
Query 225492 ACGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGT 225551
|||||||| || ||| | ||| || || ||||||||||| | ||| ||||| | |||
Sbjct 3541806 ACGAAGTCGCAAGACCAAGTGAAGGGTAGATTCTTTTTGAATATTATAATCACTGAGAGT 3541865
Query 225552 TCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACC 225611
| || || || ||||| || ||||||||||| | ||||||||||| || || |||||
Sbjct 3541866 ACGACCGTCCTCGAGCTGTTTACCAGCGAAGATCAAACGTTGTTGGTCAGGTGGGATACC 3541925
Query 225612 TTCCTTGTCTTGGATCTTTTGC-TTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTA 225670
||| ||||||||||| ||| || ||||| ||| || || || || | ||| || || |
Sbjct 3541926 TTCTTTGTCTTGGAT-TTTGGCTTTCACGTTTTCAATAGTATCAGAAGGTTCAACCTCAA 3541984
Query 225671 ACGTGATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCATT 225714
|| || ||||| || || | |||||||| ||| | |||||||
Sbjct 3541985 GTGTAATGGTCTTACCAGTAAGAGTTTTTACGAAAATTTGCATT 3542028
Score = 143 bits (158), Expect = 6e-29
Identities = 165/222 (74%), Gaps = 0/222 (0%)
Strand=Plus/Plus
Query 225492 ACGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGT 225551
|||||||| | ||| | ||| || || || |||||||| | ||||||||| || ||
Sbjct 3542382 ACGAAGTCGTAAGACCAAGTGAAGGGTAGACTCTTTTTGAATGTTGTAATCGCTCAGGGT 3542441
Query 225552 TCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACC 225611
| |||||||| ||||| || ||||||||||| | || ||||| ||||| || |||||
Sbjct 3542442 ACGTCCATCTTCAAGCTGTTTACCAGCGAAGATCAAACGCTGTTGATCGGGTGGGATACC 3542501
Query 225612 TTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAA 225671
|||||||||||||||||| || ||| ||| || ||||| || | ||| || || |
Sbjct 3542502 TTCCTTGTCTTGGATCTTGGCTTTAACATTTTCAATAGTGTCCGATGGTTCAACCTCAAG 3542561
Query 225672 CGTGATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713
||||| || || || || | ||| || | ||| | ||||||
Sbjct 3542562 GGTGATGGTTTTTCCAGTAAGAGTCTTGACGAAAATTTGCAT 3542603
Score = 131 bits (144), Expect = 4e-25
Identities = 162/222 (73%), Gaps = 0/222 (0%)
Strand=Plus/Plus
Query 225492 ACGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGT 225551
|||||||| | || | || | ||| |||||||| || | ||||| || | | ||
Sbjct 3541578 ACGAAGTCGTAATACTAAATGTAAAGTTGATTCTTTCTGAATGTTGTAGTCAGAAAGGGT 3541637
Query 225552 TCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACC 225611
|| ||||| || ||||| || ||||||||||| || || ||||| || || || || ||
Sbjct 3541638 TCGACCATCCTCAAGCTGTTTACCAGCGAAGATGAGACGCTGTTGATCAGGTGGGATTCC 3541697
Query 225612 TTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAA 225671
||||||||||||||| || ||| ||| ||| |||||||| || | ||| || || ||
Sbjct 3541698 TTCCTTGTCTTGGATTTTAGCCTTGACATTTTCAATGGTGTCGGAAGGTTCAACTTCCAA 3541757
Query 225672 CGTGATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713
||||| || || || || | ||||| | ||| | ||||||
Sbjct 3541758 GGTGATGGTTTTACCAGTGAGGGTTTTGACGAAAATTTGCAT 3541799
Score = 131 bits (144), Expect = 4e-25
Identities = 143/190 (75%), Gaps = 0/190 (0%)
Strand=Plus/Plus
Query 225524 CTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCTTCTAGCTGCTTCCCAGCGAAGA 225583
||||||||| ||| ||||| | || || | |||||||| || || || ||||||||||
Sbjct 3542186 CTTTTTGGATATTATAATCAGATAATGTACGTCCATCTTCGAGTTGTTTTCCAGCGAAGA 3542245
Query 225584 TAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTTTGCTTCACAGCTT 225643
| | |||||||||||||| ||||||||||||||||| ||||| || ||| || ||
Sbjct 3542246 TCAAACGTTGTTGGTCGGGGGGAATACCTTCCTTGTCCTGGATTTTAGCCTTGACGTTTT 3542305
Query 225644 CGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGTCAAAGTTTTTATGA 225703
| ||||| || || | ||| || || || || || || || || || | ||||| | ||
Sbjct 3542306 CAATGGTATCGGAAGGTTCAACTTCCAAAGTAATGGTTTTTCCAGTGAGGGTTTTAACGA 3542365
Query 225704 ACACTTGCAT 225713
| | ||||||
Sbjct 3542366 AAATTTGCAT 3542375
>seq641
Length=13103
Score = 96.9 bits (106), Expect = 8e-15
Identities = 82/101 (81%), Gaps = 0/101 (0%)
Strand=Plus/Minus
Query 370672 TTCAGGATGACCAAAAAATCAGAATAAATGTTGATAAAGGATAGGATCGCCTCCGCCTGA 370731
||| || |||||||||||||| |||||||||||||| | || || || ||||| |||
Sbjct 717 TTCTGGGTGACCAAAAAATCAAAATAAATGTTGATATAAAATTGGGTCTCCTCCTCCTCT 658
Query 370732 TGGATCAAAAAAGCTAGTATTAAAATTTCTATCAGTTAAAA 370772
|||||||||||| ||||||||||||| ||| ||||||
Sbjct 657 TGGATCAAAAAATGATGTATTAAAATTTCGATCTATTAAAA 617
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1192521405964854
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |