Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Tetranychus_20urticae_20[refseq_20GCF_5F000239435.1_202011-12-20]
641 sequences; 90,828,597 total letters
Query= NC_030656.1
Length=133492
Score E
Sequences producing significant alignments: (Bits) Value
seq468 286 3e-72
seq453 286 3e-72
seq451 122 7e-23
seq444 107 2e-18
>seq468
Length=1118636
Score = 286 bits (316), Expect = 3e-72
Identities = 521/756 (69%), Gaps = 14/756 (2%)
Strand=Plus/Plus
Query 4371 ACAAGCAATCGGTCAGCTACAAATTCTATATACTGGCTCATGAGTTCGCAGTTAATTCCA 4430
|| ||||||| ||| || ||||| || || || ||| ||| | || | ||| |||||
Sbjct 1106102 ACCAGCAATCTGTCTGCAACAAACTCAATGTATTGGGCCATCATTTTGTTGTTCATTCCT 1106161
Query 4431 ATTAATCTCACAGGTAGCGCGTATGTCAAAAACTCTTGTTCTATAGTTACGGCTTCTGTG 4490
|| | || || | || | || ||||| | || || || || || |||
Sbjct 1106162 ATGAGAGAAACTGGCAATGCCTCGGTTAAAAATTTCTGCTCGATTTCCACAGCATCTCGC 1106221
Query 4491 ATTATATCTTTTATTTTATCTTTAGATGGTTTATTTACTAAGTATCCAAACAATAAACAC 4550
| ||| |||| || | | || | ||| | || || | ||| ||| || |||||
Sbjct 1106222 ACTATTTCTTGAATAATTTTTTCACTCGGTCTTTTAACAACATATTTAAATAACAAACAG 1106281
Query 4551 GCAAAATCACAATGCAAACCTTCGTCTCTGCTAATCAGTTCGTTAGAAAACGTTAATCCG 4610
|||||||||||||| || ||||| |||| || ||||||||||| || ||||| ||
Sbjct 1106282 GCAAAATCACAATGTAATCCTTCATCTCGAGAGATAAGTTCGTTAGAGAAAGTTAAACCT 1106341
Query 4611 GGCATTAAACCTCTCTTTTTAAGCCAAAATATAGCGGCAAATGACCCAGAAAAGAATATG 4670
||||| | || | ||||||||||||||| |||||||| || || || || || || ||
Sbjct 1106342 GGCATCAGGCCACGCTTTTTAAGCCAAAAGATAGCGGCGAAAGAGCCTGAGAAAAAGATA 1106401
Query 4671 CCTTCTACGGCGGCAAACGCTACTAATCGGGACCCGAACGAG-CTGGCTTTGTCTTT--A 4727
||||| || ||||| || | |||| | || ||| ||| || ||| |
Sbjct 1106402 CCTTCAACACATGCAAAGGCAATCAATCTTTCGGCAAAAGAGACTGA---TGGATTTGCA 1106458
Query 4728 ATCCATTTTAATGCCCAGTTAGCTTTTTTCTTAACGCACGGAATTGTGTATATAGCGTTA 4787
|||| |||| |||||| | ||| |||| ||| || || | || | ||||| ||
Sbjct 1106459 GTCCAGTTTATTGCCCATTCAGCCTTTTGAGCAACACATGGGACAGTTTCAATAGCTTTG 1106518
Query 4788 AATA---ATTTACTTTTTTCAAATGGGTCTTGAATATAAGTGTCTATTAGTAGGCTATAC 4844
|| | | | | | ||| || || || ||||||||||| |||||||| |||
Sbjct 1106519 AAAAGAAACTCCCGCTGGTCA---GGATCACTGATGTAAGTGTCTATCAGTAGGCTGTAC 1106575
Query 4845 ATTTCAGAATGTATATTTTCTATAGCAATCTGAAATCCGTAAAAGCATCTAGCTTCTGTT 4904
|| ||||| || | ||| || || ||||| ||||| || ||||| |||| |||||| ||
Sbjct 1106576 ATCTCAGAGTGCACATTCTCAATCGCAATTTGAAAACCATAAAAACATCGAGCTTCGGTA 1106635
Query 4905 ACTTGAACTTCGTTACAAAATCTTTCTACTAAGTTTTCGTTTACTATACCGTCACTGGCT 4964
| || | || | ||||||||| |||| ||||| ||||| |||||||| |||
Sbjct 1106636 ATCTGGATATCACGAATAAATCTTTCAGCTAAATTTTCATTTACAATACCGTCTGAGGCA 1106695
Query 4965 GCAAAAAACGCCAAAACATGAGAT-ATAAAGTACTGTTCGTCAGGCTTAAGTTTTTTCCA 5023
| || || ||||| |||| || | ||||| | |||| ||| ||||| || |||
Sbjct 1106696 GAGAAGAATGCCAACACAT-AGCTGATAAAATGACGTTCTTCATCGTTAAGCTTAGCCCA 1106754
Query 5024 GTGGGGCAAATCTTTAGTTAAATCAACTTCTTCAACAGTCCAAAACGACGCTTCCGCTTT 5083
|| | |||||| || ||| ||||| |||||||||||||| ||||| ||||| |||||
Sbjct 1106755 GTCAGTTAAATCTCGAGATAAGTCAACCTCTTCAACAGTCCAGAACGAGGCTTCAGCTTT 1106814
Query 5084 TTTGTACATAGACCAAATATCAGGATACTGAATCGG 5119
|| ||||| ||||||||||||||||| ||| ||
Sbjct 1106815 CTTATACATTTCCCAAATATCAGGATACTCAATAGG 1106850
>seq453
Length=2394413
Score = 286 bits (316), Expect = 3e-72
Identities = 521/756 (69%), Gaps = 14/756 (2%)
Strand=Plus/Plus
Query 4371 ACAAGCAATCGGTCAGCTACAAATTCTATATACTGGCTCATGAGTTCGCAGTTAATTCCA 4430
|| ||||||| ||| || ||||| || || || ||| ||| | || | ||| |||||
Sbjct 11554 ACCAGCAATCTGTCTGCAACAAACTCAATGTATTGGGCCATCATTTTGTTGTTCATTCCT 11613
Query 4431 ATTAATCTCACAGGTAGCGCGTATGTCAAAAACTCTTGTTCTATAGTTACGGCTTCTGTG 4490
|| | || || | || | || ||||| | || || || || || |||
Sbjct 11614 ATGAGAGAAACTGGCAATGCCTCGGTTAAAAATTTCTGCTCGATTTCCACAGCATCTCGC 11673
Query 4491 ATTATATCTTTTATTTTATCTTTAGATGGTTTATTTACTAAGTATCCAAACAATAAACAC 4550
| ||| |||| || | | || | ||| | || || | ||| ||| || |||||
Sbjct 11674 ACTATTTCTTGAATAATTTTTTCACTCGGTCTTTTAACAACATATTTAAATAACAAACAG 11733
Query 4551 GCAAAATCACAATGCAAACCTTCGTCTCTGCTAATCAGTTCGTTAGAAAACGTTAATCCG 4610
|||||||||||||| || ||||| |||| || ||||||||||| || ||||| ||
Sbjct 11734 GCAAAATCACAATGTAATCCTTCATCTCGAGAGATAAGTTCGTTAGAGAAAGTTAAACCT 11793
Query 4611 GGCATTAAACCTCTCTTTTTAAGCCAAAATATAGCGGCAAATGACCCAGAAAAGAATATG 4670
||||| | || | ||||||||||||||| |||||||| || || || || || || ||
Sbjct 11794 GGCATCAGGCCACGCTTTTTAAGCCAAAAGATAGCGGCGAAAGAGCCTGAGAAAAAGATA 11853
Query 4671 CCTTCTACGGCGGCAAACGCTACTAATCGGGACCCGAACGAG-CTGGCTTTGTCTTT--A 4727
||||| || ||||| || | |||| | || ||| ||| || ||| |
Sbjct 11854 CCTTCAACACATGCAAAGGCAATCAATCTTTCGGCAAAAGAGACTGA---TGGATTTGCA 11910
Query 4728 ATCCATTTTAATGCCCAGTTAGCTTTTTTCTTAACGCACGGAATTGTGTATATAGCGTTA 4787
|||| |||| |||||| | ||| |||| ||| || || | || | ||||| ||
Sbjct 11911 GTCCAGTTTATTGCCCATTCAGCCTTTTGAGCAACACATGGGACAGTTTCAATAGCTTTG 11970
Query 4788 AATA---ATTTACTTTTTTCAAATGGGTCTTGAATATAAGTGTCTATTAGTAGGCTATAC 4844
|| | | | | | ||| || || || ||||||||||| |||||||| |||
Sbjct 11971 AAAAGAAACTCCCGCTGGTCA---GGATCACTGATGTAAGTGTCTATCAGTAGGCTGTAC 12027
Query 4845 ATTTCAGAATGTATATTTTCTATAGCAATCTGAAATCCGTAAAAGCATCTAGCTTCTGTT 4904
|| ||||| || | ||| || || ||||| ||||| || ||||| |||| |||||| ||
Sbjct 12028 ATCTCAGAGTGCACATTCTCAATCGCAATTTGAAAACCATAAAAACATCGAGCTTCGGTA 12087
Query 4905 ACTTGAACTTCGTTACAAAATCTTTCTACTAAGTTTTCGTTTACTATACCGTCACTGGCT 4964
| || | || | ||||||||| |||| ||||| ||||| |||||||| |||
Sbjct 12088 ATCTGGATATCACGAATAAATCTTTCAGCTAAATTTTCATTTACAATACCGTCTGAGGCA 12147
Query 4965 GCAAAAAACGCCAAAACATGAGAT-ATAAAGTACTGTTCGTCAGGCTTAAGTTTTTTCCA 5023
| || || ||||| |||| || | ||||| | |||| ||| ||||| || |||
Sbjct 12148 GAGAAGAATGCCAACACAT-AGCTGATAAAATGACGTTCTTCATCGTTAAGCTTAGCCCA 12206
Query 5024 GTGGGGCAAATCTTTAGTTAAATCAACTTCTTCAACAGTCCAAAACGACGCTTCCGCTTT 5083
|| | |||||| || ||| ||||| |||||||||||||| ||||| ||||| |||||
Sbjct 12207 GTCAGTTAAATCTCGAGATAAGTCAACCTCTTCAACAGTCCAGAACGAGGCTTCAGCTTT 12266
Query 5084 TTTGTACATAGACCAAATATCAGGATACTGAATCGG 5119
|| ||||| ||||||||||||||||| ||| ||
Sbjct 12267 CTTATACATTTCCCAAATATCAGGATACTCAATAGG 12302
>seq451
Length=2993488
Score = 122 bits (134), Expect = 7e-23
Identities = 195/278 (70%), Gaps = 4/278 (1%)
Strand=Plus/Plus
Query 31711 TGCGGGATATGATTTATATAGCGCCTACGACTATGTGGTAGAGGCAAAATCTAGAGCGCT 31770
||| || || ||||||| || |||||||| || || || ||| | ||| ||
Sbjct 1199662 TGCTGGTTACGATTTATTCAGTGCCTACGATACGGTTGTTCCCGCCAAAGGAAAAGCTCT 1199721
Query 31771 AGTTAAAACCGATATTCAAATTTCTTTACCTTCAGGGTGCTACGGACGAATAGCTCCTAG 31830
|||||||| ||| | ||| || | ||| | || || |||||| |||| || || |
Sbjct 1199722 TGTTAAAACTGATTTACAACTTCAAATTCCTGCTGGCTGTTACGGAAGAATCGCGCCACG 1199781
Query 31831 ATCTGGATTGGCAGTTAAACACTTTATCGACGTGGGTGCGGGTGTTATAGATTCAGACTA 31890
||| ||||| || | ||||| | |||||| || || || |||||| | || |||| ||
Sbjct 1199782 ATCCGGATTAGCTCTCAAACATTCTATCGATGTAGGAGCTGGTGTTGTCGACGCAGATTA 1199841
Query 31891 TAGAGGAAACGTTGGAATTGTGTTGTTTAATTTTGGAGA--AAAATCATACAGTATAAAA 31948
| ||||||| |||||| || | || || ||||||||||| || | | || ||||
Sbjct 1199842 TCGAGGAAATGTTGGAGTTATCTTATTCAATTTTGGAGACGAAGAGTTTCAAG--TAAAC 1199899
Query 31949 AAGGGCGATAGGGTAGCTCAACTAATTTGCGAAAAAAT 31986
|| || || || | |||||||| || ||||||| |||
Sbjct 1199900 AAAGGAGACAGAATCGCTCAACTTATCTGCGAAAGAAT 1199937
>seq444
Length=5217058
Score = 107 bits (118), Expect = 2e-18
Identities = 138/187 (74%), Gaps = 4/187 (2%)
Strand=Plus/Plus
Query 31805 GGGTGCTACGGACGAATAGCTCCTAGATCTGGATTGGCAGTTAAACACTTTATCGACGTG 31864
|| || || || |||| ||||| |||||||||| || ||||||| | || || ||
Sbjct 5155639 GGTTGTTATGGTAGAATTGCTCCACGATCTGGATTAGCTCTTAAACATTCGATTGATGTT 5155698
Query 31865 GGTGCGGGTGTTATAGATTCAGACTATAGAGGAAACGTTGGAATTGTGTTGTTTAATTTT 31924
|| || |||||||| || | || || ||||| || |||||| || | ||||| |||||
Sbjct 5155699 GGAGCAGGTGTTATTGACGCTGATTACAGAGGTAATGTTGGAGTTATCTTGTTCAATTTC 5155758
Query 31925 GGAGAAAAATCATAC--AGTATAAAAAAGGGCGATAGGGTAGCTCAACTAATTTGCGAAA 31982
||||| | | | ||| ||||||||| ||||| | ||||| |||||||| ||||
Sbjct 5155759 GGAGATTCAGATTTCCAAGT-TAAAAAAGGA-GATAGAATTGCTCAGCTAATTTGTGAAA 5155816
Query 31983 AAATAGA 31989
|||||||
Sbjct 5155817 AAATAGA 5155823
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 427046263808453
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