Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tetranychus_20urticae_20[refseq_20GCF_5F000239435.1_202011-12-20] 641 sequences; 90,828,597 total letters Query= NC_030656.1 Length=133492 Score E Sequences producing significant alignments: (Bits) Value seq468 286 3e-72 seq453 286 3e-72 seq451 122 7e-23 seq444 107 2e-18 >seq468 Length=1118636 Score = 286 bits (316), Expect = 3e-72 Identities = 521/756 (69%), Gaps = 14/756 (2%) Strand=Plus/Plus Query 4371 ACAAGCAATCGGTCAGCTACAAATTCTATATACTGGCTCATGAGTTCGCAGTTAATTCCA 4430 || ||||||| ||| || ||||| || || || ||| ||| | || | ||| ||||| Sbjct 1106102 ACCAGCAATCTGTCTGCAACAAACTCAATGTATTGGGCCATCATTTTGTTGTTCATTCCT 1106161 Query 4431 ATTAATCTCACAGGTAGCGCGTATGTCAAAAACTCTTGTTCTATAGTTACGGCTTCTGTG 4490 || | || || | || | || ||||| | || || || || || ||| Sbjct 1106162 ATGAGAGAAACTGGCAATGCCTCGGTTAAAAATTTCTGCTCGATTTCCACAGCATCTCGC 1106221 Query 4491 ATTATATCTTTTATTTTATCTTTAGATGGTTTATTTACTAAGTATCCAAACAATAAACAC 4550 | ||| |||| || | | || | ||| | || || | ||| ||| || ||||| Sbjct 1106222 ACTATTTCTTGAATAATTTTTTCACTCGGTCTTTTAACAACATATTTAAATAACAAACAG 1106281 Query 4551 GCAAAATCACAATGCAAACCTTCGTCTCTGCTAATCAGTTCGTTAGAAAACGTTAATCCG 4610 |||||||||||||| || ||||| |||| || ||||||||||| || ||||| || Sbjct 1106282 GCAAAATCACAATGTAATCCTTCATCTCGAGAGATAAGTTCGTTAGAGAAAGTTAAACCT 1106341 Query 4611 GGCATTAAACCTCTCTTTTTAAGCCAAAATATAGCGGCAAATGACCCAGAAAAGAATATG 4670 ||||| | || | ||||||||||||||| |||||||| || || || || || || || Sbjct 1106342 GGCATCAGGCCACGCTTTTTAAGCCAAAAGATAGCGGCGAAAGAGCCTGAGAAAAAGATA 1106401 Query 4671 CCTTCTACGGCGGCAAACGCTACTAATCGGGACCCGAACGAG-CTGGCTTTGTCTTT--A 4727 ||||| || ||||| || | |||| | || ||| ||| || ||| | Sbjct 1106402 CCTTCAACACATGCAAAGGCAATCAATCTTTCGGCAAAAGAGACTGA---TGGATTTGCA 1106458 Query 4728 ATCCATTTTAATGCCCAGTTAGCTTTTTTCTTAACGCACGGAATTGTGTATATAGCGTTA 4787 |||| |||| |||||| | ||| |||| ||| || || | || | ||||| || Sbjct 1106459 GTCCAGTTTATTGCCCATTCAGCCTTTTGAGCAACACATGGGACAGTTTCAATAGCTTTG 1106518 Query 4788 AATA---ATTTACTTTTTTCAAATGGGTCTTGAATATAAGTGTCTATTAGTAGGCTATAC 4844 || | | | | | ||| || || || ||||||||||| |||||||| ||| Sbjct 1106519 AAAAGAAACTCCCGCTGGTCA---GGATCACTGATGTAAGTGTCTATCAGTAGGCTGTAC 1106575 Query 4845 ATTTCAGAATGTATATTTTCTATAGCAATCTGAAATCCGTAAAAGCATCTAGCTTCTGTT 4904 || ||||| || | ||| || || ||||| ||||| || ||||| |||| |||||| || Sbjct 1106576 ATCTCAGAGTGCACATTCTCAATCGCAATTTGAAAACCATAAAAACATCGAGCTTCGGTA 1106635 Query 4905 ACTTGAACTTCGTTACAAAATCTTTCTACTAAGTTTTCGTTTACTATACCGTCACTGGCT 4964 | || | || | ||||||||| |||| ||||| ||||| |||||||| ||| Sbjct 1106636 ATCTGGATATCACGAATAAATCTTTCAGCTAAATTTTCATTTACAATACCGTCTGAGGCA 1106695 Query 4965 GCAAAAAACGCCAAAACATGAGAT-ATAAAGTACTGTTCGTCAGGCTTAAGTTTTTTCCA 5023 | || || ||||| |||| || | ||||| | |||| ||| ||||| || ||| Sbjct 1106696 GAGAAGAATGCCAACACAT-AGCTGATAAAATGACGTTCTTCATCGTTAAGCTTAGCCCA 1106754 Query 5024 GTGGGGCAAATCTTTAGTTAAATCAACTTCTTCAACAGTCCAAAACGACGCTTCCGCTTT 5083 || | |||||| || ||| ||||| |||||||||||||| ||||| ||||| ||||| Sbjct 1106755 GTCAGTTAAATCTCGAGATAAGTCAACCTCTTCAACAGTCCAGAACGAGGCTTCAGCTTT 1106814 Query 5084 TTTGTACATAGACCAAATATCAGGATACTGAATCGG 5119 || ||||| ||||||||||||||||| ||| || Sbjct 1106815 CTTATACATTTCCCAAATATCAGGATACTCAATAGG 1106850 >seq453 Length=2394413 Score = 286 bits (316), Expect = 3e-72 Identities = 521/756 (69%), Gaps = 14/756 (2%) Strand=Plus/Plus Query 4371 ACAAGCAATCGGTCAGCTACAAATTCTATATACTGGCTCATGAGTTCGCAGTTAATTCCA 4430 || ||||||| ||| || ||||| || || || ||| ||| | || | ||| ||||| Sbjct 11554 ACCAGCAATCTGTCTGCAACAAACTCAATGTATTGGGCCATCATTTTGTTGTTCATTCCT 11613 Query 4431 ATTAATCTCACAGGTAGCGCGTATGTCAAAAACTCTTGTTCTATAGTTACGGCTTCTGTG 4490 || | || || | || | || ||||| | || || || || || ||| Sbjct 11614 ATGAGAGAAACTGGCAATGCCTCGGTTAAAAATTTCTGCTCGATTTCCACAGCATCTCGC 11673 Query 4491 ATTATATCTTTTATTTTATCTTTAGATGGTTTATTTACTAAGTATCCAAACAATAAACAC 4550 | ||| |||| || | | || | ||| | || || | ||| ||| || ||||| Sbjct 11674 ACTATTTCTTGAATAATTTTTTCACTCGGTCTTTTAACAACATATTTAAATAACAAACAG 11733 Query 4551 GCAAAATCACAATGCAAACCTTCGTCTCTGCTAATCAGTTCGTTAGAAAACGTTAATCCG 4610 |||||||||||||| || ||||| |||| || ||||||||||| || ||||| || Sbjct 11734 GCAAAATCACAATGTAATCCTTCATCTCGAGAGATAAGTTCGTTAGAGAAAGTTAAACCT 11793 Query 4611 GGCATTAAACCTCTCTTTTTAAGCCAAAATATAGCGGCAAATGACCCAGAAAAGAATATG 4670 ||||| | || | ||||||||||||||| |||||||| || || || || || || || Sbjct 11794 GGCATCAGGCCACGCTTTTTAAGCCAAAAGATAGCGGCGAAAGAGCCTGAGAAAAAGATA 11853 Query 4671 CCTTCTACGGCGGCAAACGCTACTAATCGGGACCCGAACGAG-CTGGCTTTGTCTTT--A 4727 ||||| || ||||| || | |||| | || ||| ||| || ||| | Sbjct 11854 CCTTCAACACATGCAAAGGCAATCAATCTTTCGGCAAAAGAGACTGA---TGGATTTGCA 11910 Query 4728 ATCCATTTTAATGCCCAGTTAGCTTTTTTCTTAACGCACGGAATTGTGTATATAGCGTTA 4787 |||| |||| |||||| | ||| |||| ||| || || | || | ||||| || Sbjct 11911 GTCCAGTTTATTGCCCATTCAGCCTTTTGAGCAACACATGGGACAGTTTCAATAGCTTTG 11970 Query 4788 AATA---ATTTACTTTTTTCAAATGGGTCTTGAATATAAGTGTCTATTAGTAGGCTATAC 4844 || | | | | | ||| || || || ||||||||||| |||||||| ||| Sbjct 11971 AAAAGAAACTCCCGCTGGTCA---GGATCACTGATGTAAGTGTCTATCAGTAGGCTGTAC 12027 Query 4845 ATTTCAGAATGTATATTTTCTATAGCAATCTGAAATCCGTAAAAGCATCTAGCTTCTGTT 4904 || ||||| || | ||| || || ||||| ||||| || ||||| |||| |||||| || Sbjct 12028 ATCTCAGAGTGCACATTCTCAATCGCAATTTGAAAACCATAAAAACATCGAGCTTCGGTA 12087 Query 4905 ACTTGAACTTCGTTACAAAATCTTTCTACTAAGTTTTCGTTTACTATACCGTCACTGGCT 4964 | || | || | ||||||||| |||| ||||| ||||| |||||||| ||| Sbjct 12088 ATCTGGATATCACGAATAAATCTTTCAGCTAAATTTTCATTTACAATACCGTCTGAGGCA 12147 Query 4965 GCAAAAAACGCCAAAACATGAGAT-ATAAAGTACTGTTCGTCAGGCTTAAGTTTTTTCCA 5023 | || || ||||| |||| || | ||||| | |||| ||| ||||| || ||| Sbjct 12148 GAGAAGAATGCCAACACAT-AGCTGATAAAATGACGTTCTTCATCGTTAAGCTTAGCCCA 12206 Query 5024 GTGGGGCAAATCTTTAGTTAAATCAACTTCTTCAACAGTCCAAAACGACGCTTCCGCTTT 5083 || | |||||| || ||| ||||| |||||||||||||| ||||| ||||| ||||| Sbjct 12207 GTCAGTTAAATCTCGAGATAAGTCAACCTCTTCAACAGTCCAGAACGAGGCTTCAGCTTT 12266 Query 5084 TTTGTACATAGACCAAATATCAGGATACTGAATCGG 5119 || ||||| ||||||||||||||||| ||| || Sbjct 12267 CTTATACATTTCCCAAATATCAGGATACTCAATAGG 12302 >seq451 Length=2993488 Score = 122 bits (134), Expect = 7e-23 Identities = 195/278 (70%), Gaps = 4/278 (1%) Strand=Plus/Plus Query 31711 TGCGGGATATGATTTATATAGCGCCTACGACTATGTGGTAGAGGCAAAATCTAGAGCGCT 31770 ||| || || ||||||| || |||||||| || || || ||| | ||| || Sbjct 1199662 TGCTGGTTACGATTTATTCAGTGCCTACGATACGGTTGTTCCCGCCAAAGGAAAAGCTCT 1199721 Query 31771 AGTTAAAACCGATATTCAAATTTCTTTACCTTCAGGGTGCTACGGACGAATAGCTCCTAG 31830 |||||||| ||| | ||| || | ||| | || || |||||| |||| || || | Sbjct 1199722 TGTTAAAACTGATTTACAACTTCAAATTCCTGCTGGCTGTTACGGAAGAATCGCGCCACG 1199781 Query 31831 ATCTGGATTGGCAGTTAAACACTTTATCGACGTGGGTGCGGGTGTTATAGATTCAGACTA 31890 ||| ||||| || | ||||| | |||||| || || || |||||| | || |||| || Sbjct 1199782 ATCCGGATTAGCTCTCAAACATTCTATCGATGTAGGAGCTGGTGTTGTCGACGCAGATTA 1199841 Query 31891 TAGAGGAAACGTTGGAATTGTGTTGTTTAATTTTGGAGA--AAAATCATACAGTATAAAA 31948 | ||||||| |||||| || | || || ||||||||||| || | | || |||| Sbjct 1199842 TCGAGGAAATGTTGGAGTTATCTTATTCAATTTTGGAGACGAAGAGTTTCAAG--TAAAC 1199899 Query 31949 AAGGGCGATAGGGTAGCTCAACTAATTTGCGAAAAAAT 31986 || || || || | |||||||| || ||||||| ||| Sbjct 1199900 AAAGGAGACAGAATCGCTCAACTTATCTGCGAAAGAAT 1199937 >seq444 Length=5217058 Score = 107 bits (118), Expect = 2e-18 Identities = 138/187 (74%), Gaps = 4/187 (2%) Strand=Plus/Plus Query 31805 GGGTGCTACGGACGAATAGCTCCTAGATCTGGATTGGCAGTTAAACACTTTATCGACGTG 31864 || || || || |||| ||||| |||||||||| || ||||||| | || || || Sbjct 5155639 GGTTGTTATGGTAGAATTGCTCCACGATCTGGATTAGCTCTTAAACATTCGATTGATGTT 5155698 Query 31865 GGTGCGGGTGTTATAGATTCAGACTATAGAGGAAACGTTGGAATTGTGTTGTTTAATTTT 31924 || || |||||||| || | || || ||||| || |||||| || | ||||| ||||| Sbjct 5155699 GGAGCAGGTGTTATTGACGCTGATTACAGAGGTAATGTTGGAGTTATCTTGTTCAATTTC 5155758 Query 31925 GGAGAAAAATCATAC--AGTATAAAAAAGGGCGATAGGGTAGCTCAACTAATTTGCGAAA 31982 ||||| | | | ||| ||||||||| ||||| | ||||| |||||||| |||| Sbjct 5155759 GGAGATTCAGATTTCCAAGT-TAAAAAAGGA-GATAGAATTGCTCAGCTAATTTGTGAAA 5155816 Query 31983 AAATAGA 31989 ||||||| Sbjct 5155817 AAATAGA 5155823 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 427046263808453