Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tetranychus_20urticae_20[refseq_20GCF_5F000239435.1_202011-12-20] 641 sequences; 90,828,597 total letters Query= NC_032001.1 Length=327147 Score E Sequences producing significant alignments: (Bits) Value seq444 159 7e-34 seq448 123 5e-23 seq478 116 8e-21 >seq444 Length=5217058 Score = 159 bits (176), Expect = 7e-34 Identities = 172/228 (75%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931 ||||||||| || || | ||| | |||||| || |||||| || ||||||||||||| Sbjct 3541572 ACCACCACGAAGTCGTAATACTAAATGTAAAGTTGATTCTTTCTGAATGTTGTAGTCAGA 3541631 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991 ||| || || |||||||| || ||||| || || ||||| | ||| ||||| ||| || Sbjct 3541632 AAGGGTTCGACCATCCTCAAGCTGTTTACCAGCGAAGATGAGACGCTGTTGATCAGGTGG 3541691 Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051 || || |||||||||||||| || || || || | || || ||||| |||| ||| || Sbjct 3541692 GATTCCTTCCTTGTCTTGGATTTTAGCCTTGACATTTTCAATGGTGTCGGAAGGTTCAAC 3541751 Query 283052 TTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 ||| | ||||| || ||||| || | || || ||||| || ||||| Sbjct 3541752 TTCCAAGGTGATGGTTTTACCAGTGAGGGTTTTGACGAAAATTTGCAT 3541799 Score = 156 bits (172), Expect = 9e-33 Identities = 172/229 (75%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931 ||||||||| || || | |||| || | || ||||||||| || || || ||| Sbjct 3541800 ACCACCACGAAGTCGCAAGACCAAGTGAAGGGTAGATTCTTTTTGAATATTATAATCACT 3541859 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991 || || || || ||||| || ||||| || || ||||||||||||||||||||| || Sbjct 3541860 GAGAGTACGACCGTCCTCGAGCTGTTTACCAGCGAAGATCAAACGTTGTTGGTCAGGTGG 3541919 Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051 ||||| || ||||||||||| || ||||| ||| | || ||||| || |||| ||| || Sbjct 3541920 GATACCTTCTTTGTCTTGGATTTTGGCTTTCACGTTTTCAATAGTATCAGAAGGTTCAAC 3541979 Query 283052 TTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCATT 283100 || || || || |||||||| || | ||| || ||||| || |||||| Sbjct 3541980 CTCAAGTGTAATGGTCTTACCAGTAAGAGTTTTTACGAAAATTTGCATT 3542028 Score = 150 bits (166), Expect = 4e-31 Identities = 170/228 (75%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931 ||||||||| || || | |||| || | || |||||||| |||||||| || Sbjct 3542376 ACCACCACGAAGTCGTAAGACCAAGTGAAGGGTAGACTCTTTTTGAATGTTGTAATCGCT 3542435 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991 || || || ||||| || || ||||| || || ||||||||||| ||||| || || Sbjct 3542436 CAGGGTACGTCCATCTTCAAGCTGTTTACCAGCGAAGATCAAACGCTGTTGATCGGGTGG 3542495 Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051 ||||| ||||||||||||||||| ||||| || | || ||||||||||| | ||| || Sbjct 3542496 GATACCTTCCTTGTCTTGGATCTTGGCTTTAACATTTTCAATAGTGTCCGATGGTTCAAC 3542555 Query 283052 TTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 || || ||||| || || || || | |||||| ||||| || ||||| Sbjct 3542556 CTCAAGGGTGATGGTTTTTCCAGTAAGAGTCTTGACGAAAATTTGCAT 3542603 Score = 140 bits (154), Expect = 7e-28 Identities = 145/190 (76%), Gaps = 0/190 (0%) Strand=Plus/Plus Query 282910 CTTTTTGGATGTTGTAGTCAGCAAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGA 282969 |||||||||| || || |||| | || || ||||| || |||||||| || || |||| Sbjct 3542186 CTTTTTGGATATTATAATCAGATAATGTACGTCCATCTTCGAGTTGTTTTCCAGCGAAGA 3542245 Query 282970 TCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTAT 283029 |||||||||||||||| |||||||| |||||||| ||||| || || || ||| | | Sbjct 3542246 TCAAACGTTGTTGGTCGGGGGGAATACCTTCCTTGTCCTGGATTTTAGCCTTGACGTTTT 3542305 Query 283030 CGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGA 283089 | || || || |||| ||| ||||| | ||| || || || || || | || ||||||| Sbjct 3542306 CAATGGTATCGGAAGGTTCAACTTCCAAAGTAATGGTTTTTCCAGTGAGGGTTTTAACGA 3542365 Query 283090 ATATCTGCAT 283099 | || ||||| Sbjct 3542366 AAATTTGCAT 3542375 >seq448 Length=3678511 Score = 123 bits (136), Expect = 5e-23 Identities = 373/569 (66%), Gaps = 14/569 (2%) Strand=Plus/Minus Query 273499 TTTCCTCGATCTTACCTTTGAAACCTTTGTACCACGGCTTCATGGCTACCATAGGTTCAC 273558 ||| ||| ||| |||| ||| |||||| |||| || ||||| | || || ||| | Sbjct 51875 TTTTCTCAATCAAACCTCGGAATCCTTTGAACCAGGGTTTCATCGGAACAATTTCTTCTC 51816 Query 273559 CCTTCATCAGTCGCTCCACATTACCAATAATATCTTTAGGGTTGTAACTCGGAACGTTCG 273618 | || |||| || || || || ||| || |||| | || || ||| | |||| || | Sbjct 51815 CTTTAATCAATCTCTTCAAGTTTGCAACAACATCTCTTGGATTATAATTGGGAATCTTAG 51756 Query 273619 TAGACCAACCGGTGCCAATACCGGAAGAACCATTCACCAGAATACTCGGGATAATTGGGA 273678 | ||| ||||| ||||| ||| || ||||| |||| | | |||| || |||| Sbjct 51755 TGCTCCATCCGGTTCCAATTCCGTCAGCTCCATTTACCAACACCATTGGGAGTATAGGGA 51696 Query 273679 CATAATATTCGGGCTCAATTTTATCACCATCGTCGTAAAGGTACTTCAACAAAGCATCAT 273738 |||||||||| || |||| | | | ||| ||||| || || | | |||| |||| Sbjct 51695 CATAATATTCTGGTTCAACTCGTTGATTATCATCGTATAGATAATGGAGTAAAGGTTCAT 51636 Query 273739 CCGTATCAACGAAA--ACCTTTCGCGTCTGAGGATTCAGTTTCGTGAAAATGTACCTGGC 273796 | || | |||| | |||| | | ||| ||| ||| |||||||| || | || Sbjct 51635 C--TAACTTGGAAAATATTTTTCTAGCAAGTGGACTCAATTTGGTGAAAATATAGCGAGC 51578 Query 273797 ACTCGCATGGTCCTTGCCACCTTGCAGCCTCGAACCAAACTGACCCTCGGGCAGTAGCCA 273856 ||| ||| || || ||||| |||| || | || || ||||| || || | Sbjct 51577 ACTGGCAGCATCTTTACCACCCTGCAATCTAGTCCCGAATTGACCAAGTGGAAGCAATAG 51518 Query 273857 GTTTATGTTGTTGCTACCGACGTAATCCTGAGCCATATTCACGATAGTCCCCTGAAGGGA 273916 |||||||||||||| || || |||| ||||||| | | || || || | | || Sbjct 51517 ATTTATGTTGTTGCTGCCAACAAAATCTTGAGCCAAACTGACAATTGTAGACATCAAAGA 51458 Query 273917 TACCTCGCCGTGGTGATAGGCGCTGTGTTCGGCGATATAAC---CACTG--AACTGAGCA 273971 || || ||||| || || |||| ||| ||| ||| ||| |||||||| Sbjct 51457 CACTTCACCGTGATGGTA--TGCTG-ATTC--CGAACCAACGGTACCTGCTAACTGAGCT 51403 Query 273972 ACCTTCACATCGCTCGTCAAGTTTCGCTTGAATGCGGAATACAACACCTTCCGCTGCGAG 274031 || || || || |||| ||||||||||| | | |||| || || | || Sbjct 51402 ACTTTAGTTTCATTCTTCAAATTTCGCTTGAAACATGTAAACAAAACTTTTCTTTGGCCA 51343 Query 274032 GGCTTGAACCCATCAACGACCGATGGAAT 274060 || ||||| ||||| | || |||||||| Sbjct 51342 GGTTTGAATCCATCCATTACTGATGGAAT 51314 Score = 122 bits (134), Expect = 2e-22 Identities = 370/567 (65%), Gaps = 10/567 (2%) Strand=Plus/Plus Query 273499 TTTCCTCGATCTTACCTTTGAAACCTTTGTACCACGGCTTCATGGCTACCATAGGTTCAC 273558 ||| ||| ||| |||| ||| |||||| |||| || ||||| | || | ||| | Sbjct 133744 TTTTCTCAATCAAACCTCGGAATCCTTTGAACCAGGGTTTCATCGGAACAACTTCTTCTC 133803 Query 273559 CCTTCATCAGTCGCTCCACATTACCAATAATATCTTTAGGGTTGTAACTCGGAACGTTCG 273618 | || |||| || || || || ||| || |||| | || || ||| | |||| || | Sbjct 133804 CATTAATCAATCTCTTCAAGTTTGCAACAACATCTCTTGGATTATAATTGGGAATCTTAG 133863 Query 273619 TAGACCAACCGGTGCCAATACCGGAAGAACCATTCACCAGAATACTCGGGATAATTGGGA 273678 | ||| ||||| ||||| ||| || ||||| |||| | | |||| || |||| Sbjct 133864 TGCTCCATCCGGTTCCAATTCCGTCAGCTCCATTTACCAACACCATTGGGAGTATAGGGA 133923 Query 273679 CATAATATTCGGGCTCAATTTTATCACCATCGTCGTAAAGGTACTTCAACAAAGCATCAT 273738 |||||||||| || |||| | | | ||| ||||| || || | | |||| |||| Sbjct 133924 CATAATATTCTGGTTCAACTCGTTGATTATCATCGTATAGATAATGGAGTAAAGGTTCAT 133983 Query 273739 CCGTATCAACGAAA--ACCTTTCGCGTCTGAGGATTCAGTTTCGTGAAAATGTACCTGGC 273796 | || | |||| | |||| | | ||| ||| ||| |||||||| || | || Sbjct 133984 C--TAACTTGGAAAATATTTTTCTAGCAAGTGGACTCAATTTGGTGAAAATATAACGAGC 134041 Query 273797 ACTCGCATGGTCCTTGCCACCTTGCAGCCTCGAACCAAACTGACCCTCGGGCAGTAGCCA 273856 ||| || || || ||||| |||| || | || || ||||| || || | Sbjct 134042 ACTGGCGGCATCTTTACCACCCTGCAATCTAGTCCCGAATTGACCAAGTGGAAGCAATAG 134101 Query 273857 GTTTATGTTGTTGCTACCGACGTAATCCTGAGCCATATTCACGATAGTCCCCTGAAGGGA 273916 |||||||||||||| || || |||| ||||||| | | || || || | | || Sbjct 134102 ATTTATGTTGTTGCTGCCAACAAAATCTTGAGCCAAACTGACAATTGTAGACATCAAAGA 134161 Query 273917 TACCTCGCCGTGGTGATAGGCGCTGTGTTCGG---CGATATAACCACTGAACTGAGCAAC 273973 || || ||||| || || |||| ||||| | | |||| |||||||| || Sbjct 134162 CACTTCACCGTGATGGTA--TGCTG-ATTCGGAGCCAACGGTACCAGCTAACTGAGCTAC 134218 Query 273974 CTTCACATCGCTCGTCAAGTTTCGCTTGAATGCGGAATACAACACCTTCCGCTGCGAGGG 274033 || || || |||| ||||| ||||| | | |||| ||||| | || || Sbjct 134219 TTTAGTTTCATTCTTCAAATTTCGTTTGAAACATGTAAACAAAACCTTTCTTTGGCCAGG 134278 Query 274034 CTTGAACCCATCAACGACCGATGGAAT 274060 ||||| ||||| | || |||||||| Sbjct 134279 TTTGAATCCATCCATTACTGATGGAAT 134305 >seq478 Length=629985 Score = 116 bits (128), Expect = 8e-21 Identities = 253/374 (68%), Gaps = 6/374 (2%) Strand=Plus/Minus Query 273564 ATCAGTCGCTCCACATTACCAATAATATCTTTAGGGTTGTAACTCGGAACGTTCGTAGAC 273623 || ||||||| || ||| | |||| |||| ||| ||| || | |||| || ||| | Sbjct 272680 ATGAGTCGCTTCAAATTCTCGATAAGATCTCGAGGATTGAAATTGGGAATTTTTGTACTC 272621 Query 273624 CAACCGGTGCCAATACCGGAAGAACCATTCACCAGAATACTCGGGATAATTGGGACATAA 273683 ||||| || |||||||| || ||| ||||||| || | || | || ||| |||||| Sbjct 272620 CAACCTGTACCAATACCTTCAGCACCGTTCACCAAAACCATTGGAAGAACTGGTACATAA 272561 Query 273684 TATTCGGGCTCAATTTTATCACCATCGTCGTAAAGGTACTTCAACAAAGCATCATC-CGT 273742 |||||||| |||| |||| ||| || || || || || | |||| |||||| || Sbjct 272560 TATTCGGGTTCAACTTTACTGTTATCATCATATAGATAATTGAGTAAAGGATCATCAAGT 272501 Query 273743 ATCAACGAAAACCTTTCGCG-TCTGA-GGATTCAGTTTCGTGAAAATGTACCTGGCACTC 273800 || | ||| ||| || || | ||| | | || ||||||||||| | | ||| Sbjct 272500 AT---GGGAAATATTTTACGAGCTAATGGACTTAACTTAGTGAAAATGTAACGAGGACTG 272444 Query 273801 GCATGGTCCTTGCCACCTTGCAGCCTCGAACCAAACTGACCCTCGGGCAGTAGCCAGTTT 273860 || || || ||||| | | | | |||||| ||||| ||||| || ||| Sbjct 272443 GCCGCATCTTTACCACCAAGTAAACGTGTACCAAATTGACCAAGGGGCATGAGAAGGTTA 272384 Query 273861 ATGTTGTTGCTACCGACGTAATCCTGAGCCATATTCACGATAGTCCCCTGAAGGGATACC 273920 || |||||||| || || ||| ||||||| ||| | ||||| || ||| || | Sbjct 272383 ATATTGTTGCTTCCAACAAAATTTTGAGCCAAATTTATAATAGTTGCCATAAGTGAAGCT 272324 Query 273921 TCGCCGTGGTGATA 273934 || || || ||||| Sbjct 272323 TCACCATGATGATA 272310 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1046730603327214