Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Tetranychus_20urticae_20[refseq_20GCF_5F000239435.1_202011-12-20]
641 sequences; 90,828,597 total letters
Query= NC_032001.1
Length=327147
Score E
Sequences producing significant alignments: (Bits) Value
seq444 159 7e-34
seq448 123 5e-23
seq478 116 8e-21
>seq444
Length=5217058
Score = 159 bits (176), Expect = 7e-34
Identities = 172/228 (75%), Gaps = 0/228 (0%)
Strand=Plus/Plus
Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931
||||||||| || || | ||| | |||||| || |||||| || |||||||||||||
Sbjct 3541572 ACCACCACGAAGTCGTAATACTAAATGTAAAGTTGATTCTTTCTGAATGTTGTAGTCAGA 3541631
Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991
||| || || |||||||| || ||||| || || ||||| | ||| ||||| ||| ||
Sbjct 3541632 AAGGGTTCGACCATCCTCAAGCTGTTTACCAGCGAAGATGAGACGCTGTTGATCAGGTGG 3541691
Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051
|| || |||||||||||||| || || || || | || || ||||| |||| ||| ||
Sbjct 3541692 GATTCCTTCCTTGTCTTGGATTTTAGCCTTGACATTTTCAATGGTGTCGGAAGGTTCAAC 3541751
Query 283052 TTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099
||| | ||||| || ||||| || | || || ||||| || |||||
Sbjct 3541752 TTCCAAGGTGATGGTTTTACCAGTGAGGGTTTTGACGAAAATTTGCAT 3541799
Score = 156 bits (172), Expect = 9e-33
Identities = 172/229 (75%), Gaps = 0/229 (0%)
Strand=Plus/Plus
Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931
||||||||| || || | |||| || | || ||||||||| || || || |||
Sbjct 3541800 ACCACCACGAAGTCGCAAGACCAAGTGAAGGGTAGATTCTTTTTGAATATTATAATCACT 3541859
Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991
|| || || || ||||| || ||||| || || ||||||||||||||||||||| ||
Sbjct 3541860 GAGAGTACGACCGTCCTCGAGCTGTTTACCAGCGAAGATCAAACGTTGTTGGTCAGGTGG 3541919
Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051
||||| || ||||||||||| || ||||| ||| | || ||||| || |||| ||| ||
Sbjct 3541920 GATACCTTCTTTGTCTTGGATTTTGGCTTTCACGTTTTCAATAGTATCAGAAGGTTCAAC 3541979
Query 283052 TTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCATT 283100
|| || || || |||||||| || | ||| || ||||| || ||||||
Sbjct 3541980 CTCAAGTGTAATGGTCTTACCAGTAAGAGTTTTTACGAAAATTTGCATT 3542028
Score = 150 bits (166), Expect = 4e-31
Identities = 170/228 (75%), Gaps = 0/228 (0%)
Strand=Plus/Plus
Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931
||||||||| || || | |||| || | || |||||||| |||||||| ||
Sbjct 3542376 ACCACCACGAAGTCGTAAGACCAAGTGAAGGGTAGACTCTTTTTGAATGTTGTAATCGCT 3542435
Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991
|| || || ||||| || || ||||| || || ||||||||||| ||||| || ||
Sbjct 3542436 CAGGGTACGTCCATCTTCAAGCTGTTTACCAGCGAAGATCAAACGCTGTTGATCGGGTGG 3542495
Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051
||||| ||||||||||||||||| ||||| || | || ||||||||||| | ||| ||
Sbjct 3542496 GATACCTTCCTTGTCTTGGATCTTGGCTTTAACATTTTCAATAGTGTCCGATGGTTCAAC 3542555
Query 283052 TTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099
|| || ||||| || || || || | |||||| ||||| || |||||
Sbjct 3542556 CTCAAGGGTGATGGTTTTTCCAGTAAGAGTCTTGACGAAAATTTGCAT 3542603
Score = 140 bits (154), Expect = 7e-28
Identities = 145/190 (76%), Gaps = 0/190 (0%)
Strand=Plus/Plus
Query 282910 CTTTTTGGATGTTGTAGTCAGCAAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGA 282969
|||||||||| || || |||| | || || ||||| || |||||||| || || ||||
Sbjct 3542186 CTTTTTGGATATTATAATCAGATAATGTACGTCCATCTTCGAGTTGTTTTCCAGCGAAGA 3542245
Query 282970 TCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTAT 283029
|||||||||||||||| |||||||| |||||||| ||||| || || || ||| | |
Sbjct 3542246 TCAAACGTTGTTGGTCGGGGGGAATACCTTCCTTGTCCTGGATTTTAGCCTTGACGTTTT 3542305
Query 283030 CGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGA 283089
| || || || |||| ||| ||||| | ||| || || || || || | || |||||||
Sbjct 3542306 CAATGGTATCGGAAGGTTCAACTTCCAAAGTAATGGTTTTTCCAGTGAGGGTTTTAACGA 3542365
Query 283090 ATATCTGCAT 283099
| || |||||
Sbjct 3542366 AAATTTGCAT 3542375
>seq448
Length=3678511
Score = 123 bits (136), Expect = 5e-23
Identities = 373/569 (66%), Gaps = 14/569 (2%)
Strand=Plus/Minus
Query 273499 TTTCCTCGATCTTACCTTTGAAACCTTTGTACCACGGCTTCATGGCTACCATAGGTTCAC 273558
||| ||| ||| |||| ||| |||||| |||| || ||||| | || || ||| |
Sbjct 51875 TTTTCTCAATCAAACCTCGGAATCCTTTGAACCAGGGTTTCATCGGAACAATTTCTTCTC 51816
Query 273559 CCTTCATCAGTCGCTCCACATTACCAATAATATCTTTAGGGTTGTAACTCGGAACGTTCG 273618
| || |||| || || || || ||| || |||| | || || ||| | |||| || |
Sbjct 51815 CTTTAATCAATCTCTTCAAGTTTGCAACAACATCTCTTGGATTATAATTGGGAATCTTAG 51756
Query 273619 TAGACCAACCGGTGCCAATACCGGAAGAACCATTCACCAGAATACTCGGGATAATTGGGA 273678
| ||| ||||| ||||| ||| || ||||| |||| | | |||| || ||||
Sbjct 51755 TGCTCCATCCGGTTCCAATTCCGTCAGCTCCATTTACCAACACCATTGGGAGTATAGGGA 51696
Query 273679 CATAATATTCGGGCTCAATTTTATCACCATCGTCGTAAAGGTACTTCAACAAAGCATCAT 273738
|||||||||| || |||| | | | ||| ||||| || || | | |||| ||||
Sbjct 51695 CATAATATTCTGGTTCAACTCGTTGATTATCATCGTATAGATAATGGAGTAAAGGTTCAT 51636
Query 273739 CCGTATCAACGAAA--ACCTTTCGCGTCTGAGGATTCAGTTTCGTGAAAATGTACCTGGC 273796
| || | |||| | |||| | | ||| ||| ||| |||||||| || | ||
Sbjct 51635 C--TAACTTGGAAAATATTTTTCTAGCAAGTGGACTCAATTTGGTGAAAATATAGCGAGC 51578
Query 273797 ACTCGCATGGTCCTTGCCACCTTGCAGCCTCGAACCAAACTGACCCTCGGGCAGTAGCCA 273856
||| ||| || || ||||| |||| || | || || ||||| || || |
Sbjct 51577 ACTGGCAGCATCTTTACCACCCTGCAATCTAGTCCCGAATTGACCAAGTGGAAGCAATAG 51518
Query 273857 GTTTATGTTGTTGCTACCGACGTAATCCTGAGCCATATTCACGATAGTCCCCTGAAGGGA 273916
|||||||||||||| || || |||| ||||||| | | || || || | | ||
Sbjct 51517 ATTTATGTTGTTGCTGCCAACAAAATCTTGAGCCAAACTGACAATTGTAGACATCAAAGA 51458
Query 273917 TACCTCGCCGTGGTGATAGGCGCTGTGTTCGGCGATATAAC---CACTG--AACTGAGCA 273971
|| || ||||| || || |||| ||| ||| ||| ||| ||||||||
Sbjct 51457 CACTTCACCGTGATGGTA--TGCTG-ATTC--CGAACCAACGGTACCTGCTAACTGAGCT 51403
Query 273972 ACCTTCACATCGCTCGTCAAGTTTCGCTTGAATGCGGAATACAACACCTTCCGCTGCGAG 274031
|| || || || |||| ||||||||||| | | |||| || || | ||
Sbjct 51402 ACTTTAGTTTCATTCTTCAAATTTCGCTTGAAACATGTAAACAAAACTTTTCTTTGGCCA 51343
Query 274032 GGCTTGAACCCATCAACGACCGATGGAAT 274060
|| ||||| ||||| | || ||||||||
Sbjct 51342 GGTTTGAATCCATCCATTACTGATGGAAT 51314
Score = 122 bits (134), Expect = 2e-22
Identities = 370/567 (65%), Gaps = 10/567 (2%)
Strand=Plus/Plus
Query 273499 TTTCCTCGATCTTACCTTTGAAACCTTTGTACCACGGCTTCATGGCTACCATAGGTTCAC 273558
||| ||| ||| |||| ||| |||||| |||| || ||||| | || | ||| |
Sbjct 133744 TTTTCTCAATCAAACCTCGGAATCCTTTGAACCAGGGTTTCATCGGAACAACTTCTTCTC 133803
Query 273559 CCTTCATCAGTCGCTCCACATTACCAATAATATCTTTAGGGTTGTAACTCGGAACGTTCG 273618
| || |||| || || || || ||| || |||| | || || ||| | |||| || |
Sbjct 133804 CATTAATCAATCTCTTCAAGTTTGCAACAACATCTCTTGGATTATAATTGGGAATCTTAG 133863
Query 273619 TAGACCAACCGGTGCCAATACCGGAAGAACCATTCACCAGAATACTCGGGATAATTGGGA 273678
| ||| ||||| ||||| ||| || ||||| |||| | | |||| || ||||
Sbjct 133864 TGCTCCATCCGGTTCCAATTCCGTCAGCTCCATTTACCAACACCATTGGGAGTATAGGGA 133923
Query 273679 CATAATATTCGGGCTCAATTTTATCACCATCGTCGTAAAGGTACTTCAACAAAGCATCAT 273738
|||||||||| || |||| | | | ||| ||||| || || | | |||| ||||
Sbjct 133924 CATAATATTCTGGTTCAACTCGTTGATTATCATCGTATAGATAATGGAGTAAAGGTTCAT 133983
Query 273739 CCGTATCAACGAAA--ACCTTTCGCGTCTGAGGATTCAGTTTCGTGAAAATGTACCTGGC 273796
| || | |||| | |||| | | ||| ||| ||| |||||||| || | ||
Sbjct 133984 C--TAACTTGGAAAATATTTTTCTAGCAAGTGGACTCAATTTGGTGAAAATATAACGAGC 134041
Query 273797 ACTCGCATGGTCCTTGCCACCTTGCAGCCTCGAACCAAACTGACCCTCGGGCAGTAGCCA 273856
||| || || || ||||| |||| || | || || ||||| || || |
Sbjct 134042 ACTGGCGGCATCTTTACCACCCTGCAATCTAGTCCCGAATTGACCAAGTGGAAGCAATAG 134101
Query 273857 GTTTATGTTGTTGCTACCGACGTAATCCTGAGCCATATTCACGATAGTCCCCTGAAGGGA 273916
|||||||||||||| || || |||| ||||||| | | || || || | | ||
Sbjct 134102 ATTTATGTTGTTGCTGCCAACAAAATCTTGAGCCAAACTGACAATTGTAGACATCAAAGA 134161
Query 273917 TACCTCGCCGTGGTGATAGGCGCTGTGTTCGG---CGATATAACCACTGAACTGAGCAAC 273973
|| || ||||| || || |||| ||||| | | |||| |||||||| ||
Sbjct 134162 CACTTCACCGTGATGGTA--TGCTG-ATTCGGAGCCAACGGTACCAGCTAACTGAGCTAC 134218
Query 273974 CTTCACATCGCTCGTCAAGTTTCGCTTGAATGCGGAATACAACACCTTCCGCTGCGAGGG 274033
|| || || |||| ||||| ||||| | | |||| ||||| | || ||
Sbjct 134219 TTTAGTTTCATTCTTCAAATTTCGTTTGAAACATGTAAACAAAACCTTTCTTTGGCCAGG 134278
Query 274034 CTTGAACCCATCAACGACCGATGGAAT 274060
||||| ||||| | || ||||||||
Sbjct 134279 TTTGAATCCATCCATTACTGATGGAAT 134305
>seq478
Length=629985
Score = 116 bits (128), Expect = 8e-21
Identities = 253/374 (68%), Gaps = 6/374 (2%)
Strand=Plus/Minus
Query 273564 ATCAGTCGCTCCACATTACCAATAATATCTTTAGGGTTGTAACTCGGAACGTTCGTAGAC 273623
|| ||||||| || ||| | |||| |||| ||| ||| || | |||| || ||| |
Sbjct 272680 ATGAGTCGCTTCAAATTCTCGATAAGATCTCGAGGATTGAAATTGGGAATTTTTGTACTC 272621
Query 273624 CAACCGGTGCCAATACCGGAAGAACCATTCACCAGAATACTCGGGATAATTGGGACATAA 273683
||||| || |||||||| || ||| ||||||| || | || | || ||| ||||||
Sbjct 272620 CAACCTGTACCAATACCTTCAGCACCGTTCACCAAAACCATTGGAAGAACTGGTACATAA 272561
Query 273684 TATTCGGGCTCAATTTTATCACCATCGTCGTAAAGGTACTTCAACAAAGCATCATC-CGT 273742
|||||||| |||| |||| ||| || || || || || | |||| |||||| ||
Sbjct 272560 TATTCGGGTTCAACTTTACTGTTATCATCATATAGATAATTGAGTAAAGGATCATCAAGT 272501
Query 273743 ATCAACGAAAACCTTTCGCG-TCTGA-GGATTCAGTTTCGTGAAAATGTACCTGGCACTC 273800
|| | ||| ||| || || | ||| | | || ||||||||||| | | |||
Sbjct 272500 AT---GGGAAATATTTTACGAGCTAATGGACTTAACTTAGTGAAAATGTAACGAGGACTG 272444
Query 273801 GCATGGTCCTTGCCACCTTGCAGCCTCGAACCAAACTGACCCTCGGGCAGTAGCCAGTTT 273860
|| || || ||||| | | | | |||||| ||||| ||||| || |||
Sbjct 272443 GCCGCATCTTTACCACCAAGTAAACGTGTACCAAATTGACCAAGGGGCATGAGAAGGTTA 272384
Query 273861 ATGTTGTTGCTACCGACGTAATCCTGAGCCATATTCACGATAGTCCCCTGAAGGGATACC 273920
|| |||||||| || || ||| ||||||| ||| | ||||| || ||| || |
Sbjct 272383 ATATTGTTGCTTCCAACAAAATTTTGAGCCAAATTTATAATAGTTGCCATAAGTGAAGCT 272324
Query 273921 TCGCCGTGGTGATA 273934
|| || || |||||
Sbjct 272323 TCACCATGATGATA 272310
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1046730603327214
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