Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Tetranychus_20urticae_20[refseq_20GCF_5F000239435.1_202011-12-20]
641 sequences; 90,828,597 total letters
Query= NC_032111.1
Length=163005
Score E
Sequences producing significant alignments: (Bits) Value
seq468 262 4e-65
seq453 262 4e-65
seq444 82.4 8e-11
>seq468
Length=1118636
Score = 262 bits (290), Expect = 4e-65
Identities = 501/732 (68%), Gaps = 12/732 (2%)
Strand=Plus/Plus
Query 23341 CTATCTGCTACAAATTCAATATATTGACACATCAAATCATAGTTTATACCTATTAGTTTT 23400
|| ||||| ||||| ||||| ||||| ||||| | | ||| || ||||| ||
Sbjct 1106111 CTGTCTGCAACAAACTCAATGTATTGGGCCATCATTTTGTTGTTCATTCCTATGAGAGAA 1106170
Query 23401 ACTGGAATCGCATCATATAAGAATAGTTTTTCAATGGAAACAGCATCTTTAATTATTTGA 23460
||||| | || || ||| ||| | || || ||||||||| | |||||
Sbjct 1106171 ACTGGCAATGCCTCGGTTAAAAATTTCTGCTCGATTTCCACAGCATCTCGCACTATTTCT 1106230
Query 23461 ACAATAACTTCTTCACTAGGTGGATATTTTAA----ATACTTAAACAATAAACATGCAAA 23516
||||| || |||||| ||| |||||| ||| ||||| || ||||| |||||
Sbjct 1106231 TGAATAATTTTTTCACTCGGTC----TTTTAACAACATATTTAAATAACAAACAGGCAAA 1106286
Query 23517 ATCACAATGTAGGCCTTCATCCCTACTAATCAATTCATTAGAAAATGTTAATCCTGGCAT 23576
||||||||||| |||||||| | | || | ||| ||||| || ||||| ||||||||
Sbjct 1106287 ATCACAATGTAATCCTTCATCTCGAGAGATAAGTTCGTTAGAGAAAGTTAAACCTGGCAT 1106346
Query 23577 TAATCCTCGTTTTTTAATCCAAAATATTGCAGCAAATGATCCGGAAAAGAAAATACCCTC 23636
| || || ||||||| |||||| || || || || || || || || || ||||| ||
Sbjct 1106347 CAGGCCACGCTTTTTAAGCCAAAAGATAGCGGCGAAAGAGCCTGAGAAAAAGATACCTTC 1106406
Query 23637 AACAGCCGCAAAGGCCACAAGACGTGTACCAAATGTTGCATTATA-ATCAGAAATCCAtt 23695
|||| |||||||| | | | | |||| | | | || || | | |||| |
Sbjct 1106407 AACACATGCAAAGGCAATCAATCTTTCGGCAAAAGAGAC-TGATGGATTTGCAGTCCAGT 1106465
Query 23696 tttttGTCCAATTAGCCTTCAATTTTACACACTCAATTGTTTCAATTGCTTTTAAGAGAA 23755
|| ||| ||| | |||||| ||||| | |||||||| ||||| || ||||
Sbjct 1106466 TTATTGCCCATTCAGCCTTTTGAGCAACACATGGGACAGTTTCAATAGCTTTGAAAAGAA 1106525
Query 23756 AAGTTTTTTCTTCATTATCTGTTATATATGTATCAATTAGTAAACTATACATTTCAGAAT 23815
| | ||| ||| | || || || || || |||| || ||||| ||||| |
Sbjct 1106526 ACTCCCGCTGGTCAGGATCACTGATGTAAGTGTCTATCAGTAGGCTGTACATCTCAGAGT 1106585
Query 23816 GAATATTTTCAATAGCAATCTGAAACCCATAAAAACATCTAGCTTCAGACAATTGAACAT 23875
| | ||| ||||| ||||| ||||| ||||||||||||| |||||| | | || | ||
Sbjct 1106586 GCACATTCTCAATCGCAATTTGAAAACCATAAAAACATCGAGCTTCGGTAATCTGGATAT 1106645
Query 23876 CATTAAAAAATCTTTTAGCTAAATTTTCGTTAACAATACCATCACTAGCAGCAAAGAAAG 23935
|| || |||||||| |||||||||||| || |||||||| || |||| ||||| |
Sbjct 1106646 CACGAATAAATCTTTCAGCTAAATTTTCATTTACAATACCGTCTGAGGCAGAGAAGAATG 1106705
Query 23936 CAAGAACATATTTTATAAAATGTCTTTCATCAGTTGATAA-TTTTTTCCAATCATTAATA 23994
| | ||||| | |||||||| | ||| ||| | | ||| || ||| ||| | | |
Sbjct 1106706 CCAACACATAGCTGATAAAATGACGTTCTTCA-TCGTTAAGCTTAGCCCAGTCAGTTAAA 1106764
Query 23995 TCTTTTGATAAATCAACTTCATCAACTGTCCAAAAACTTGCCAAGGCACGCTTATACATT 24054
||| ||||| ||||| || ||||| ||||| || || || ||||||||||
Sbjct 1106765 TCTCGAGATAAGTCAACCTCTTCAACAGTCCAGAACGAGGCTTCAGCTTTCTTATACATT 1106824
Query 24055 AGCCAAATATCA 24066
||||||||||
Sbjct 1106825 TCCCAAATATCA 1106836
Score = 87.8 bits (96), Expect = 2e-12
Identities = 69/83 (83%), Gaps = 0/83 (0%)
Strand=Plus/Plus
Query 23216 ttttttGATATTCCCCAACACGTCTTTCGAAAAAATTTGTCTTACCCTCTAATGATATAT 23275
||||||||||||| ||||| | | | |||||||| ||||| ||||| || || || || |
Sbjct 1105889 TTTTTTGATATTCACCAACCCTTTTCTCGAAAAAGTTTGTTTTACCATCCAAAGAAATGT 1105948
Query 23276 TTTCCATAAAATCAAATGGATTA 23298
|||||||||||||||||||||
Sbjct 1105949 GATCCATAAAATCAAATGGATTA 1105971
>seq453
Length=2394413
Score = 262 bits (290), Expect = 4e-65
Identities = 501/732 (68%), Gaps = 12/732 (2%)
Strand=Plus/Plus
Query 23341 CTATCTGCTACAAATTCAATATATTGACACATCAAATCATAGTTTATACCTATTAGTTTT 23400
|| ||||| ||||| ||||| ||||| ||||| | | ||| || ||||| ||
Sbjct 11563 CTGTCTGCAACAAACTCAATGTATTGGGCCATCATTTTGTTGTTCATTCCTATGAGAGAA 11622
Query 23401 ACTGGAATCGCATCATATAAGAATAGTTTTTCAATGGAAACAGCATCTTTAATTATTTGA 23460
||||| | || || ||| ||| | || || ||||||||| | |||||
Sbjct 11623 ACTGGCAATGCCTCGGTTAAAAATTTCTGCTCGATTTCCACAGCATCTCGCACTATTTCT 11682
Query 23461 ACAATAACTTCTTCACTAGGTGGATATTTTAA----ATACTTAAACAATAAACATGCAAA 23516
||||| || |||||| ||| |||||| ||| ||||| || ||||| |||||
Sbjct 11683 TGAATAATTTTTTCACTCGGTC----TTTTAACAACATATTTAAATAACAAACAGGCAAA 11738
Query 23517 ATCACAATGTAGGCCTTCATCCCTACTAATCAATTCATTAGAAAATGTTAATCCTGGCAT 23576
||||||||||| |||||||| | | || | ||| ||||| || ||||| ||||||||
Sbjct 11739 ATCACAATGTAATCCTTCATCTCGAGAGATAAGTTCGTTAGAGAAAGTTAAACCTGGCAT 11798
Query 23577 TAATCCTCGTTTTTTAATCCAAAATATTGCAGCAAATGATCCGGAAAAGAAAATACCCTC 23636
| || || ||||||| |||||| || || || || || || || || || ||||| ||
Sbjct 11799 CAGGCCACGCTTTTTAAGCCAAAAGATAGCGGCGAAAGAGCCTGAGAAAAAGATACCTTC 11858
Query 23637 AACAGCCGCAAAGGCCACAAGACGTGTACCAAATGTTGCATTATA-ATCAGAAATCCAtt 23695
|||| |||||||| | | | | |||| | | | || || | | |||| |
Sbjct 11859 AACACATGCAAAGGCAATCAATCTTTCGGCAAAAGAGAC-TGATGGATTTGCAGTCCAGT 11917
Query 23696 tttttGTCCAATTAGCCTTCAATTTTACACACTCAATTGTTTCAATTGCTTTTAAGAGAA 23755
|| ||| ||| | |||||| ||||| | |||||||| ||||| || ||||
Sbjct 11918 TTATTGCCCATTCAGCCTTTTGAGCAACACATGGGACAGTTTCAATAGCTTTGAAAAGAA 11977
Query 23756 AAGTTTTTTCTTCATTATCTGTTATATATGTATCAATTAGTAAACTATACATTTCAGAAT 23815
| | ||| ||| | || || || || || |||| || ||||| ||||| |
Sbjct 11978 ACTCCCGCTGGTCAGGATCACTGATGTAAGTGTCTATCAGTAGGCTGTACATCTCAGAGT 12037
Query 23816 GAATATTTTCAATAGCAATCTGAAACCCATAAAAACATCTAGCTTCAGACAATTGAACAT 23875
| | ||| ||||| ||||| ||||| ||||||||||||| |||||| | | || | ||
Sbjct 12038 GCACATTCTCAATCGCAATTTGAAAACCATAAAAACATCGAGCTTCGGTAATCTGGATAT 12097
Query 23876 CATTAAAAAATCTTTTAGCTAAATTTTCGTTAACAATACCATCACTAGCAGCAAAGAAAG 23935
|| || |||||||| |||||||||||| || |||||||| || |||| ||||| |
Sbjct 12098 CACGAATAAATCTTTCAGCTAAATTTTCATTTACAATACCGTCTGAGGCAGAGAAGAATG 12157
Query 23936 CAAGAACATATTTTATAAAATGTCTTTCATCAGTTGATAA-TTTTTTCCAATCATTAATA 23994
| | ||||| | |||||||| | ||| ||| | | ||| || ||| ||| | | |
Sbjct 12158 CCAACACATAGCTGATAAAATGACGTTCTTCA-TCGTTAAGCTTAGCCCAGTCAGTTAAA 12216
Query 23995 TCTTTTGATAAATCAACTTCATCAACTGTCCAAAAACTTGCCAAGGCACGCTTATACATT 24054
||| ||||| ||||| || ||||| ||||| || || || ||||||||||
Sbjct 12217 TCTCGAGATAAGTCAACCTCTTCAACAGTCCAGAACGAGGCTTCAGCTTTCTTATACATT 12276
Query 24055 AGCCAAATATCA 24066
||||||||||
Sbjct 12277 TCCCAAATATCA 12288
Score = 87.8 bits (96), Expect = 2e-12
Identities = 69/83 (83%), Gaps = 0/83 (0%)
Strand=Plus/Plus
Query 23216 ttttttGATATTCCCCAACACGTCTTTCGAAAAAATTTGTCTTACCCTCTAATGATATAT 23275
||||||||||||| ||||| | | | |||||||| ||||| ||||| || || || || |
Sbjct 11341 TTTTTTGATATTCGCCAACCCTTTTCTCGAAAAAGTTTGTTTTACCATCCAAAGAAATGT 11400
Query 23276 TTTCCATAAAATCAAATGGATTA 23298
|||||||||||||||||||||
Sbjct 11401 GATCCATAAAATCAAATGGATTA 11423
>seq444
Length=5217058
Score = 82.4 bits (90), Expect = 8e-11
Identities = 139/196 (71%), Gaps = 4/196 (2%)
Strand=Plus/Minus
Query 21146 TTTTTCAAAAATTATTTGTGCTACTCTATCACCCTTAGAAATATG-AAATGTAGATTTTC 21204
||||||| |||||| || || | |||||| || || || || |||| | || | ||
Sbjct 5155818 TTTTTCACAAATTAGCTGAGCAATTCTATCTCCTTTTTTAACTTGGAAATCT-GAATCTC 5155760
Query 21205 CATTATTAATTAGAATAATTCCAACAATACCTCTATAATCCCTATCTATAACACCTCCAC 21264
| ||| | | |||| ||||||| ||||||| ||||| || ||||||||| | |
Sbjct 5155759 CGAAATTGAACAAGATAACTCCAACATTACCTCTGTAATCAGCGTCAATAACACCTGCTC 5155700
Query 21265 CGATATCAATATTTTTATTTAAG-GATAATCCTGATCTTGACGCTATTCTACCATAATAT 21323
| | |||||| | |||||| | |||||| |||| || || |||||||||||| |
Sbjct 5155699 CAACATCAATCGAATG-TTTAAGAGCTAATCCAGATCGTGGAGCAATTCTACCATAACAA 5155641
Query 21324 CCTTCTGGTATTTCTA 21339
|| ||||| | || ||
Sbjct 5155640 CCATCTGGCACTTGTA 5155625
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 521483821577400
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |