Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tetranychus_20urticae_20[refseq_20GCF_5F000239435.1_202011-12-20] 641 sequences; 90,828,597 total letters Query= NC_032111.1 Length=163005 Score E Sequences producing significant alignments: (Bits) Value seq468 262 4e-65 seq453 262 4e-65 seq444 82.4 8e-11 >seq468 Length=1118636 Score = 262 bits (290), Expect = 4e-65 Identities = 501/732 (68%), Gaps = 12/732 (2%) Strand=Plus/Plus Query 23341 CTATCTGCTACAAATTCAATATATTGACACATCAAATCATAGTTTATACCTATTAGTTTT 23400 || ||||| ||||| ||||| ||||| ||||| | | ||| || ||||| || Sbjct 1106111 CTGTCTGCAACAAACTCAATGTATTGGGCCATCATTTTGTTGTTCATTCCTATGAGAGAA 1106170 Query 23401 ACTGGAATCGCATCATATAAGAATAGTTTTTCAATGGAAACAGCATCTTTAATTATTTGA 23460 ||||| | || || ||| ||| | || || ||||||||| | ||||| Sbjct 1106171 ACTGGCAATGCCTCGGTTAAAAATTTCTGCTCGATTTCCACAGCATCTCGCACTATTTCT 1106230 Query 23461 ACAATAACTTCTTCACTAGGTGGATATTTTAA----ATACTTAAACAATAAACATGCAAA 23516 ||||| || |||||| ||| |||||| ||| ||||| || ||||| ||||| Sbjct 1106231 TGAATAATTTTTTCACTCGGTC----TTTTAACAACATATTTAAATAACAAACAGGCAAA 1106286 Query 23517 ATCACAATGTAGGCCTTCATCCCTACTAATCAATTCATTAGAAAATGTTAATCCTGGCAT 23576 ||||||||||| |||||||| | | || | ||| ||||| || ||||| |||||||| Sbjct 1106287 ATCACAATGTAATCCTTCATCTCGAGAGATAAGTTCGTTAGAGAAAGTTAAACCTGGCAT 1106346 Query 23577 TAATCCTCGTTTTTTAATCCAAAATATTGCAGCAAATGATCCGGAAAAGAAAATACCCTC 23636 | || || ||||||| |||||| || || || || || || || || || ||||| || Sbjct 1106347 CAGGCCACGCTTTTTAAGCCAAAAGATAGCGGCGAAAGAGCCTGAGAAAAAGATACCTTC 1106406 Query 23637 AACAGCCGCAAAGGCCACAAGACGTGTACCAAATGTTGCATTATA-ATCAGAAATCCAtt 23695 |||| |||||||| | | | | |||| | | | || || | | |||| | Sbjct 1106407 AACACATGCAAAGGCAATCAATCTTTCGGCAAAAGAGAC-TGATGGATTTGCAGTCCAGT 1106465 Query 23696 tttttGTCCAATTAGCCTTCAATTTTACACACTCAATTGTTTCAATTGCTTTTAAGAGAA 23755 || ||| ||| | |||||| ||||| | |||||||| ||||| || |||| Sbjct 1106466 TTATTGCCCATTCAGCCTTTTGAGCAACACATGGGACAGTTTCAATAGCTTTGAAAAGAA 1106525 Query 23756 AAGTTTTTTCTTCATTATCTGTTATATATGTATCAATTAGTAAACTATACATTTCAGAAT 23815 | | ||| ||| | || || || || || |||| || ||||| ||||| | Sbjct 1106526 ACTCCCGCTGGTCAGGATCACTGATGTAAGTGTCTATCAGTAGGCTGTACATCTCAGAGT 1106585 Query 23816 GAATATTTTCAATAGCAATCTGAAACCCATAAAAACATCTAGCTTCAGACAATTGAACAT 23875 | | ||| ||||| ||||| ||||| ||||||||||||| |||||| | | || | || Sbjct 1106586 GCACATTCTCAATCGCAATTTGAAAACCATAAAAACATCGAGCTTCGGTAATCTGGATAT 1106645 Query 23876 CATTAAAAAATCTTTTAGCTAAATTTTCGTTAACAATACCATCACTAGCAGCAAAGAAAG 23935 || || |||||||| |||||||||||| || |||||||| || |||| ||||| | Sbjct 1106646 CACGAATAAATCTTTCAGCTAAATTTTCATTTACAATACCGTCTGAGGCAGAGAAGAATG 1106705 Query 23936 CAAGAACATATTTTATAAAATGTCTTTCATCAGTTGATAA-TTTTTTCCAATCATTAATA 23994 | | ||||| | |||||||| | ||| ||| | | ||| || ||| ||| | | | Sbjct 1106706 CCAACACATAGCTGATAAAATGACGTTCTTCA-TCGTTAAGCTTAGCCCAGTCAGTTAAA 1106764 Query 23995 TCTTTTGATAAATCAACTTCATCAACTGTCCAAAAACTTGCCAAGGCACGCTTATACATT 24054 ||| ||||| ||||| || ||||| ||||| || || || |||||||||| Sbjct 1106765 TCTCGAGATAAGTCAACCTCTTCAACAGTCCAGAACGAGGCTTCAGCTTTCTTATACATT 1106824 Query 24055 AGCCAAATATCA 24066 |||||||||| Sbjct 1106825 TCCCAAATATCA 1106836 Score = 87.8 bits (96), Expect = 2e-12 Identities = 69/83 (83%), Gaps = 0/83 (0%) Strand=Plus/Plus Query 23216 ttttttGATATTCCCCAACACGTCTTTCGAAAAAATTTGTCTTACCCTCTAATGATATAT 23275 ||||||||||||| ||||| | | | |||||||| ||||| ||||| || || || || | Sbjct 1105889 TTTTTTGATATTCACCAACCCTTTTCTCGAAAAAGTTTGTTTTACCATCCAAAGAAATGT 1105948 Query 23276 TTTCCATAAAATCAAATGGATTA 23298 ||||||||||||||||||||| Sbjct 1105949 GATCCATAAAATCAAATGGATTA 1105971 >seq453 Length=2394413 Score = 262 bits (290), Expect = 4e-65 Identities = 501/732 (68%), Gaps = 12/732 (2%) Strand=Plus/Plus Query 23341 CTATCTGCTACAAATTCAATATATTGACACATCAAATCATAGTTTATACCTATTAGTTTT 23400 || ||||| ||||| ||||| ||||| ||||| | | ||| || ||||| || Sbjct 11563 CTGTCTGCAACAAACTCAATGTATTGGGCCATCATTTTGTTGTTCATTCCTATGAGAGAA 11622 Query 23401 ACTGGAATCGCATCATATAAGAATAGTTTTTCAATGGAAACAGCATCTTTAATTATTTGA 23460 ||||| | || || ||| ||| | || || ||||||||| | ||||| Sbjct 11623 ACTGGCAATGCCTCGGTTAAAAATTTCTGCTCGATTTCCACAGCATCTCGCACTATTTCT 11682 Query 23461 ACAATAACTTCTTCACTAGGTGGATATTTTAA----ATACTTAAACAATAAACATGCAAA 23516 ||||| || |||||| ||| |||||| ||| ||||| || ||||| ||||| Sbjct 11683 TGAATAATTTTTTCACTCGGTC----TTTTAACAACATATTTAAATAACAAACAGGCAAA 11738 Query 23517 ATCACAATGTAGGCCTTCATCCCTACTAATCAATTCATTAGAAAATGTTAATCCTGGCAT 23576 ||||||||||| |||||||| | | || | ||| ||||| || ||||| |||||||| Sbjct 11739 ATCACAATGTAATCCTTCATCTCGAGAGATAAGTTCGTTAGAGAAAGTTAAACCTGGCAT 11798 Query 23577 TAATCCTCGTTTTTTAATCCAAAATATTGCAGCAAATGATCCGGAAAAGAAAATACCCTC 23636 | || || ||||||| |||||| || || || || || || || || || ||||| || Sbjct 11799 CAGGCCACGCTTTTTAAGCCAAAAGATAGCGGCGAAAGAGCCTGAGAAAAAGATACCTTC 11858 Query 23637 AACAGCCGCAAAGGCCACAAGACGTGTACCAAATGTTGCATTATA-ATCAGAAATCCAtt 23695 |||| |||||||| | | | | |||| | | | || || | | |||| | Sbjct 11859 AACACATGCAAAGGCAATCAATCTTTCGGCAAAAGAGAC-TGATGGATTTGCAGTCCAGT 11917 Query 23696 tttttGTCCAATTAGCCTTCAATTTTACACACTCAATTGTTTCAATTGCTTTTAAGAGAA 23755 || ||| ||| | |||||| ||||| | |||||||| ||||| || |||| Sbjct 11918 TTATTGCCCATTCAGCCTTTTGAGCAACACATGGGACAGTTTCAATAGCTTTGAAAAGAA 11977 Query 23756 AAGTTTTTTCTTCATTATCTGTTATATATGTATCAATTAGTAAACTATACATTTCAGAAT 23815 | | ||| ||| | || || || || || |||| || ||||| ||||| | Sbjct 11978 ACTCCCGCTGGTCAGGATCACTGATGTAAGTGTCTATCAGTAGGCTGTACATCTCAGAGT 12037 Query 23816 GAATATTTTCAATAGCAATCTGAAACCCATAAAAACATCTAGCTTCAGACAATTGAACAT 23875 | | ||| ||||| ||||| ||||| ||||||||||||| |||||| | | || | || Sbjct 12038 GCACATTCTCAATCGCAATTTGAAAACCATAAAAACATCGAGCTTCGGTAATCTGGATAT 12097 Query 23876 CATTAAAAAATCTTTTAGCTAAATTTTCGTTAACAATACCATCACTAGCAGCAAAGAAAG 23935 || || |||||||| |||||||||||| || |||||||| || |||| ||||| | Sbjct 12098 CACGAATAAATCTTTCAGCTAAATTTTCATTTACAATACCGTCTGAGGCAGAGAAGAATG 12157 Query 23936 CAAGAACATATTTTATAAAATGTCTTTCATCAGTTGATAA-TTTTTTCCAATCATTAATA 23994 | | ||||| | |||||||| | ||| ||| | | ||| || ||| ||| | | | Sbjct 12158 CCAACACATAGCTGATAAAATGACGTTCTTCA-TCGTTAAGCTTAGCCCAGTCAGTTAAA 12216 Query 23995 TCTTTTGATAAATCAACTTCATCAACTGTCCAAAAACTTGCCAAGGCACGCTTATACATT 24054 ||| ||||| ||||| || ||||| ||||| || || || |||||||||| Sbjct 12217 TCTCGAGATAAGTCAACCTCTTCAACAGTCCAGAACGAGGCTTCAGCTTTCTTATACATT 12276 Query 24055 AGCCAAATATCA 24066 |||||||||| Sbjct 12277 TCCCAAATATCA 12288 Score = 87.8 bits (96), Expect = 2e-12 Identities = 69/83 (83%), Gaps = 0/83 (0%) Strand=Plus/Plus Query 23216 ttttttGATATTCCCCAACACGTCTTTCGAAAAAATTTGTCTTACCCTCTAATGATATAT 23275 ||||||||||||| ||||| | | | |||||||| ||||| ||||| || || || || | Sbjct 11341 TTTTTTGATATTCGCCAACCCTTTTCTCGAAAAAGTTTGTTTTACCATCCAAAGAAATGT 11400 Query 23276 TTTCCATAAAATCAAATGGATTA 23298 ||||||||||||||||||||| Sbjct 11401 GATCCATAAAATCAAATGGATTA 11423 >seq444 Length=5217058 Score = 82.4 bits (90), Expect = 8e-11 Identities = 139/196 (71%), Gaps = 4/196 (2%) Strand=Plus/Minus Query 21146 TTTTTCAAAAATTATTTGTGCTACTCTATCACCCTTAGAAATATG-AAATGTAGATTTTC 21204 ||||||| |||||| || || | |||||| || || || || |||| | || | || Sbjct 5155818 TTTTTCACAAATTAGCTGAGCAATTCTATCTCCTTTTTTAACTTGGAAATCT-GAATCTC 5155760 Query 21205 CATTATTAATTAGAATAATTCCAACAATACCTCTATAATCCCTATCTATAACACCTCCAC 21264 | ||| | | |||| ||||||| ||||||| ||||| || ||||||||| | | Sbjct 5155759 CGAAATTGAACAAGATAACTCCAACATTACCTCTGTAATCAGCGTCAATAACACCTGCTC 5155700 Query 21265 CGATATCAATATTTTTATTTAAG-GATAATCCTGATCTTGACGCTATTCTACCATAATAT 21323 | | |||||| | |||||| | |||||| |||| || || |||||||||||| | Sbjct 5155699 CAACATCAATCGAATG-TTTAAGAGCTAATCCAGATCGTGGAGCAATTCTACCATAACAA 5155641 Query 21324 CCTTCTGGTATTTCTA 21339 || ||||| | || || Sbjct 5155640 CCATCTGGCACTTGTA 5155625 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 521483821577400