Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Themira_20minor_20[genbank_20GCA_5F001014575.1_202015-05-28] 33,166 sequences; 99,885,510 total letters Query= NC_000935.1 Length=36524 Score E Sequences producing significant alignments: (Bits) Value seq26497 156 1e-33 seq28844 140 8e-29 seq13007 134 3e-27 seq12086 102 2e-17 seq22958 93.3 1e-14 seq6436 82.4 2e-11 >seq26497 Length=2520 Score = 156 bits (172), Expect = 1e-33 Identities = 147/186 (79%), Gaps = 1/186 (1%) Strand=Plus/Minus Query 25361 TTTTCCTTTGGGAAAGGCTTTTAATAAACGCTCGAGGTCATGTTTCCAGTGGTAAGCGAC 25420 ||| ||||| ||||||| |||||||| || || | ||| || |||||||||||||| || Sbjct 2479 TTTACCTTTAGGAAAGGATTTTAATAGGCGTTCTAAGTCGTGCTTCCAGTGGTAAGCAAC 2420 Query 25421 CAGTACTGGCGTCCCTCCTGATTCATTAACAATACTCTCTAGCGCCTGAATTTTGGCATC 25480 |||| |||| | || ||||||||| ||| ||||| || | |||||||||||| ||||| Sbjct 2419 AAGTATTGGCATACCACCTGATTCACTAATGATACTTTCCAACGCCTGAATTTTTGCATC 2360 Query 25481 GTGTATCTCTGTCCAATTGCGATTGTCATCGCTATAAATAGCGCCACTGGCAATTTGCAA 25540 ||| | || |||||| | |||||||| | || ||||| |||||||| |||||||| Sbjct 2359 GTGCAGTTCGACCCAATTTTTACTGTCATCGGTGTAGATAGCACCACTGGCGATTTGCAA 2300 Query 25541 A-ATTT 25545 | |||| Sbjct 2299 ACATTT 2294 Score = 150 bits (166), Expect = 4e-32 Identities = 137/173 (79%), Gaps = 0/173 (0%) Strand=Plus/Minus Query 26100 GTAAATACGCTGGCATGGGTATTTTTGAGTGCCGCTATCCGTGCTTTGGCAGAGCCAATG 26159 |||||||| ||||||| ||||||||||| ||||| || || ||||||| | ||||| Sbjct 1802 GTAAATACACTGGCATTGGTATTTTTGATAGCCGCCATACGCTCTTTGGCGGTACCAATA 1743 Query 26160 ATGGGTTGTACTTCAATATTACGCAGGTGGCTCCATTTAAGCGCTTCATCTGGCCAGGTG 26219 || ||||| || || |||||||| | ||| ||||||||| |||||| |||||||| || Sbjct 1742 ATCGGTTGAACATCGATATTACGTAAGTGATTCCATTTAATCGCTTCGTCTGGCCATGTT 1683 Query 26220 GATTGCGCTACCCGTAACGGGGCTAACACTAATGTCGGTTTGGTTTCACTGCC 26272 || ||||||||||| ||||||| ||||| | ||||| |||||||| || Sbjct 1682 GAACTAGCTACCCGTAATGGGGCTAGAACTAAAGCCGGTTGCGTTTCACTACC 1630 Score = 111 bits (122), Expect = 4e-20 Identities = 197/286 (69%), Gaps = 1/286 (0%) Strand=Plus/Minus Query 28378 GCAAAAAGCCGTGCGTGTTCGCGTAATTGGTAAGGGGTAGGTTTTTCGCCCGGTGCTTTA 28437 |||||||||| || ||||| |||| ||| | ||| || ||||| || || |||||| Sbjct 1027 GCAAAAAGCCTAGCATGTTCCCGTAGTTGATCGGGGCGGGGCTTTTCTCCGGGGGCTTTA 968 Query 28438 CACTCCACAAAAATAATCTTGCCATTGGGCAGGGCGACTAATCGGTCAGGCACGCCTCGT 28497 ||||| ||||||||||| |||| ||| |||| || | | || ||||| ||||| Sbjct 967 CACTCAACAAAAATAATTTTGCTATTAGGCAAAAGTACGATCCTATCTGGCACACCTCGA 908 Query 28498 CGTCCGGGTGAAACGAATTTATAGGCAATACCGCCGATTTTTCGCACTTCACTCACCAGG 28557 || || |||||| || ||||| | ||||| || |||| ||||||| | |||| | Sbjct 907 CGACCCGGTGAAGTAAACTTATAAGTGATACCACCTGCTTTTTTCACTTCATTGACCAAG 848 Query 28558 TGTTTTTCAATGCTGTCTTCCCTAATTAACCGCATGGATACATCCTTTTTATGTTTTCCC 28617 || |||| || ||||| | | | | ||| | ||||| || |||| | Sbjct 847 TGCCTTTCGATTACATCTTCACGTACTTTGCTCATTGCCTGTGCCTTTGTA-CATTTCGC 789 Query 28618 GTTTAATTTGCATCAGGCAAAAATCGGCGCGGTTCTCACTCCAGAT 28663 |||||| ||| ||| |||||||| | ||| | || ||||| || Sbjct 788 GTTTAAGTTGTTTCATACAAAAATCAGAGCGTCTTTCGCTCCAAAT 743 >seq28844 Length=1855 Score = 140 bits (154), Expect = 8e-29 Identities = 152/202 (75%), Gaps = 0/202 (0%) Strand=Plus/Minus Query 25525 CACTGGCAATTTGCAAAATTTTTATTGTTTTGGCCGCCGCGTTTAACGCTTCAATCGCAC 25584 ||||||| ||||||||| ||||| |||||| || |||||||||| |||||||| | Sbjct 218 CACTGGCGATTTGCAAACATTTTACTGTTTTAGCTGCCGCGTTTAGGGCTTCAATTCCTT 159 Query 25585 TCTCGCCCAATTCAAGAAACAGTTCTTTTTCCATGGCATGATAGTGTGCTCGCGCTTTTG 25644 | | | |||||||||| |||||||||||| | ||||| ||| ||| ||||| | Sbjct 158 CGTGTTCTAGCTCAAGAAACATTTCTTTTTCCATTTCTTGATATTGTTTTCGGGCTTTGG 99 Query 25645 CAGGTAGTTCAACGTTGATAACGTTGTGTATCGGTTCATCGATATCAAACCAGTCGGCTG 25704 || ||||||| || || | ||||| || || || || ||||| ||||| || || | Sbjct 98 TGGGGAGTTCAAGTTTAATGATATTGTGGATAGGCTCTTCAATATCGAACCAATCAGCGG 39 Query 25705 CATCAAGGGATAAGGTGACATC 25726 |||||||||| | |||||||| Sbjct 38 CATCAAGGGAGATAGTGACATC 17 >seq13007 Length=9541 Score = 134 bits (148), Expect = 3e-27 Identities = 119/149 (80%), Gaps = 0/149 (0%) Strand=Plus/Plus Query 23584 GCGTGTTCAGTAAGATGATTAGACGCTAAGTGTGCATATCGCCTTACCATTTCGACTGAT 23643 || |||||||| |||||||| | |||||| || ||||| | || |||||||| | |||| Sbjct 9393 GCATGTTCAGTTAGATGATTCGGCGCTAAATGAGCATACCTTCTCACCATTTCTATTGAT 9452 Query 23644 TCCCATCCACCCATTTCTTGTAAAACAGAAAGTGGAACGCCAGACTGAATTAACCAGCTA 23703 |||||||| ||||||||||| | |||| | |||||| || ||||||| | ||| || Sbjct 9453 TCCCATCCTCCCATTTCTTGAAGTGCAGATAATGGAACTCCGGACTGAACAAGCCAACTC 9512 Query 23704 GCCCAAGTATGTCTCAGATCATGAAAGCG 23732 ||||||||||| |||| |||||||| || Sbjct 9513 GCCCAAGTATGCCTCAAGTCATGAAATCG 9541 >seq12086 Length=38917 Score = 102 bits (112), Expect = 2e-17 Identities = 86/105 (82%), Gaps = 2/105 (2%) Strand=Plus/Plus Query 26886 TTCCAGTTCTTGCCAACGATCAACCAGGCAAGCCGTAAATTCAGGGCAAAGTTGAGCAAC 26945 ||| ||||||| ||| || ||||| || | ||| ||||||||||| | | ||||||||| Sbjct 1593 TTCGAGTTCTTTCCAGCGGTCAACTAGTCGAGCTGTAAATTCAGGCGATAATTGAGCAAC 1652 Query 26946 AACAATAATGCTGTCACGTTTACCTTGTTCACCTTCAAAAATAAA 26990 |||||||||||||| || ||||||| ||||||| |||||||| Sbjct 1653 TACAATAATGCTGTCGCGCTTACCTTCTTCACCT--GAAAATAAA 1695 >seq22958 Length=1552 Score = 93.3 bits (102), Expect = 1e-14 Identities = 90/116 (78%), Gaps = 0/116 (0%) Strand=Plus/Minus Query 31048 CCAAATGCAGAAGCGATATGTTGTAGCAGAGCATCGCGTTGTGTTGCGTTTTGTACGGCA 31107 ||||| || | | ||||||||||||||||||||| || |||||||| |||||| || Sbjct 848 CCAAAAGCGGCTGAGATATGTTGTAGCAGAGCATCACGCTGTGTTGCCACTTGTACTTCA 789 Query 31108 TTATCCGTTAATTGCTGGGTAACAGTTGATAGCCGCTTTTGCTCGTTTTCAACGGC 31163 ||||| ||||| | ||||| | ||| || |||||||| || |||||||||| Sbjct 788 TTATCGGTTAACTTTTGGGTTAATTTTGCTAAGCGCTTTTGTTCAATTTCAACGGC 733 >seq6436 Length=1597 Score = 82.4 bits (90), Expect = 2e-11 Identities = 62/73 (85%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 25812 AACCAGCGAGACGTAAACGCATTATAGGTTCTGCCTAAGCGCTCGCCCTGGTCAACAAAC 25871 ||||||||||| ||||| || |||||||||||||||| || | || || ||||||||| Sbjct 147 AACCAGCGAGAAGTAAATGCGCTATAGGTTCTGCCTAATCGTTGACCTTGATCAACAAAC 88 Query 25872 CACGCTTGACCCC 25884 |||||||| |||| Sbjct 87 CACGCTTGCCCCC 75 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 116709216402312