Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Themira_20minor_20[genbank_20GCA_5F001014575.1_202015-05-28] 33,166 sequences; 99,885,510 total letters Query= NC_001132.2 Length=161773 Score E Sequences producing significant alignments: (Bits) Value seq7146 145 8e-30 seq5502 84.2 2e-11 >seq7146 Length=6253 Score = 145 bits (160), Expect = 8e-30 Identities = 422/640 (66%), Gaps = 16/640 (3%) Strand=Plus/Minus Query 16778 CCCAGTTCGGCGATTAATCTATCCGCTACAAATTCTATATATTGGCACATTAATTCGCAG 16837 ||||||||| | | | | || || || ||||| || || | | |||| | || |||| Sbjct 5941 CCCAGTTCGACCAGCAGACGGTCGGCCACGAATTCGATGTACTCGGACATCAGTTTGCAG 5882 Query 16838 TTCATTCCTATAAGACGTACCGGAAGAGCTTCCGTCAAAAATCGTTGCTCTATAACAACC 16897 ||||| || || | | ||||| || ||||| || | || || || || ||| Sbjct 5881 TTCATGCCGATCAAATTGACCGGCAGCGCTTCGGTGAGGAACTCCTGTTCGATCTTCACC 5822 Query 16898 GCTTCCTTAATAATACTAGCAACT-CGTTC----CTCGGACGGTGTATGTTTAAGATGTT 16952 ||||| | || || || | | ||||| || ||||| || | ||||| | Sbjct 5821 GCTTCGTCGATGAT-CTCGATGATGCGTTCGCGGCTGGGACGCTGCACC----AGATGCT 5767 Query 16953 TAAACATCAGACATGCGAAATCGCAATGTAATCCCTCGTCTCTGCTGATAAGTTCGTTAG 17012 |||||||| || |||||||| ||||| | |||||||| | ||| | ||||| | Sbjct 5766 GGAACATCAGGCAGGCGAAATCACAATGCAGGCCCTCGTCGCGTGAGATCAACTCGTTGG 5707 Query 17013 AAAATGTCAACCCGGGCATCTTTCCTCGTTTCTTTAACCAAAATATCGCGGCGAACGACC 17072 | || || | |||||||| || || ||||| | ||| || |||| |||||| | Sbjct 5706 AGAAGGTGAGGCCGGGCATGAGGCCGCGCTTCTTCAGCCAGAAGATCGAGGCGAAACTGC 5647 Query 17073 CAGAAAAGAATATACCCTCGACGGATGCAAACGCGATTAATCGTTCGGCGTACGTCGC-G 17131 | || ||||| || |||||||||| || ||||| || | || || || | | || | Sbjct 5646 CCGAGAAGAAAATGCCCTCGACGGCGGCGAACGCAATGATGCGCTCACCGAAGTTGGCCG 5587 Query 17132 TCTTTGTTACGA-ATCCATTTCTGCACCCACTCGGCTTTTTGCTTTAT-GCAATCCATCG 17189 ||| | | || |||||| | | |||| ||||| || | ||| | || | || | Sbjct 5586 ACTTCG--AGGAGATCCATGCCATCGCCCAGTCGGCCTTCTTCTTGACCGCCGGCAAT-G 5530 Query 17190 TTTCTATGGCCTTAAATAATTTCTCTTTTTCCTGTAGGTCGATTATATACGTATCGATGA 17249 |||| | || || || | || | || | || | || || || || || | Sbjct 5529 TTTCGACCGCATTGAACAGGAAGTCCCGCTGATGCGGATCCCTGATGTAGGTGTCAATCA 5470 Query 17250 GTAGGCTGTACATTTCGGAGTGTATGTTCTCCATGGCTATCTGAAATCCGTAAAAGCATC 17309 | | ||||||||| || ||||| | ||||||||||| ||||| || ||||| ||||| | Sbjct 5469 GAATGCTGTACATCTCCGAGTGGACATTCTCCATGGCGATCTGGAAGCCGTAGAAGCAGC 5410 Query 17310 GGGCTTCCGCTATTTGAACTTCCACGTAGAATCGTTCCGCTAGATTTTCGTTCACGATGC 17369 | || || | | ||| || || | ||| || ||| | ||||| ||||| || |||| Sbjct 5409 GCGCCTCTGTCACTTGCACCTCTTGGCTGAAACGCTCCACCAGATTCTCGTTGACAATGC 5350 Query 17370 CGTCGCTCGCGGCGAAAAACGCCAATATATGCTTAATGAA 17409 | ||| |||||||| || |||| | ||| |||||| Sbjct 5349 CATCGGAGGCGGCGAAGAAGGCCAGCACGTGCGAAATGAA 5310 >seq5502 Length=7310 Score = 84.2 bits (92), Expect = 2e-11 Identities = 79/101 (78%), Gaps = 0/101 (0%) Strand=Plus/Minus Query 119936 TCAGGAGTCTCGCTCCATTCCAGTAtttttttAGCCCAGTACATACGTAAGTATCCATGC 119995 || || | ||| ||||||| |||||||| || |||||||||||||| | | | || ||| Sbjct 5991 TCCGGCGACTCAGTCCATTCGAGTATTTTCTTCGCCCAGTACATACGCAGGAAGCCGTGC 5932 Query 119996 ATTTTACCTTCACGAACCATTTGAAGTTGTGCGGCGTTCCA 120036 ||||| || || || |||| || | ||| ||||||||||| Sbjct 5931 ATTTTGCCCTCGCGCACCAGCTGCAATTGCGCGGCGTTCCA 5891 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 517331038532880