Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Themira_20minor_20[genbank_20GCA_5F001014575.1_202015-05-28] 33,166 sequences; 99,885,510 total letters Query= NC_001317.1 Length=30624 Score E Sequences producing significant alignments: (Bits) Value seq13683 123 5e-24 >seq13683 Length=3702 Score = 123 bits (136), Expect = 5e-24 Identities = 157/216 (73%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 11859 CACAAAGGCACGATAGGCGCTGTCAGGCGAGTTATTGAGCCGCTCGGATACATAATCAAC 11918 |||||||| ||||| ||||| | | || || ||||||| | || || |||| Sbjct 1295 CACAAAGGTACGATTGGCGCATTGCGTCGTGTGGTTGAGCCATTGGGTTATTTAATTCGG 1354 Query 11919 GTTACGGAATGGTGGGAGACAGGTGACCCGGCGGGAACGTTTCGTCTTGATATCGGTGTG 11978 |||| || |||||| | || || | || || |||||||||||||||||||| ||| Sbjct 1355 GTTATTGAGTGGTGGAAAACTAACGAAACCGCCGGCACGTTTCGTCTTGATATCGGGGTG 1414 Query 11979 CTGGAAAGCGGTATTACCGAAGAAATGTATTTAGAAATGGAGCGGTTGATTGCTGATGCG 12038 || |||| |||||||| |||||||||||| ||| | || |||||| |||||| Sbjct 1415 CTTGAAACGGGTATTACTGAAGAAATGTATCAAGAGTTAGAAGCATTGATTTTTGATGCA 1474 Query 12039 AAACCTGCGAGCCGTCATTTGATTGGCCTGAATATT 12074 ||||| ||||||||||| | || || || | |||| Sbjct 1475 AAACCGGCGAGCCGTCACCTTATCGGTCTCACTATT 1510 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 97836652219512