Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Themira_20minor_20[genbank_20GCA_5F001014575.1_202015-05-28] 33,166 sequences; 99,885,510 total letters Query= NC_001609.1 Length=11624 Score E Sequences producing significant alignments: (Bits) Value seq29176 102 6e-18 >seq29176 Length=3337 Score = 102 bits (112), Expect = 6e-18 Identities = 185/267 (69%), Gaps = 14/267 (5%) Strand=Plus/Plus Query 3694 TTAGCTTCATCGCGTTTTGCTCTTGCCTGAGCAAGCGTCACAGTAGGCCAAACACCAAAC 3753 || ||||| || | |||||| ||||| || ||||| | | | || | ||||| || Sbjct 1116 TTGGCTTCTTCTCTTTTTGCCCTTGCTTGTGCAAGTGATATTGATGGATATACACCTAAA 1175 Query 3754 GCAAGACGATCCTCTTTTTTGTCAGAGGGACGTCTGTATTTCATGCGCCAGTATTTGGAA 3813 || || | | |||||| || | ||| |||||||| ||||| || || ||| Sbjct 1176 GCCAGCCTTTTCTCTTTACCTGCATA------TCTATATTTCATACGCCAATACTTAGAA 1229 Query 3814 CCTTTGGCCGAAACCTCAAGATACAAACCACCACCATCGGCCATTTTGTAGGTTTTGTCT 3873 || || | | ||| || | ||||| || ||||| || | | ||| || | ||| ||| Sbjct 1230 CCATTTGGAGCAACTTCTAAATACATGCCCCCACCGTCAGAAAGTTTATAAGCTTTCTCT 1289 Query 3874 TTTGGCTTTGCGGTCTCGACCTGTCTGGCGTTGAGCTTCATTTGGGGGCAC--ATTTCTA 3931 |||||||| | || || || |||||||| | |||||||| ||||||||| |||| | Sbjct 1290 TTTGGCTTGGAAGTGTCTACTTGTCTGGCTGTTAGCTTCATCTGGGGGCACCGATTT-TC 1348 Query 3932 ATCGAA---GTTAAGATGCCCCCAATT 3955 || ||| | || |||||||||||| Sbjct 1349 ATTGAACGGGGTA--ATGCCCCCAATT 1373 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 37067764206112