Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Themira_20minor_20[genbank_20GCA_5F001014575.1_202015-05-28] 33,166 sequences; 99,885,510 total letters Query= NC_001611.1 Length=185578 Score E Sequences producing significant alignments: (Bits) Value seq15048 618 5e-172 >seq15048 Length=4365 Score = 618 bits (684), Expect = 5e-172 Identities = 1280/1894 (68%), Gaps = 27/1894 (1%) Strand=Plus/Plus Query 52787 TTTATT-TTATCCTTGTCCAATGTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAG 52845 |||||| ||| ||||| | ||||||||||||| | | ||| ||||| || | || Sbjct 1270 TTTATTGTTACTTTTGTCAACCGTGAATTGAATGGCATTCGCTGCTGGTTTAGTTCTAAG 1329 Query 52846 ATAGTACATTCCCGTTTTTAGACCGAGACTCCATCCGTAAAAATGCATACTTGTTAGTTT 52905 || |||||||| ||||||||||| |||| | | ||||| || ||||| || Sbjct 1330 GTAATACATTCCAGTTTTTAGACCAGCTTTCCACGCAAAGAAATGAATCGATGTTAACTT 1389 Query 52906 GGAATAACTCGGATCTGCTATATGGATATTCATAGATTGACTTTGATCGATGAAGGCTCC 52965 |||| | || ||| | | ||| ||||| | || || ||||||||||| || ||||| Sbjct 1390 CCCATAATTTGGCTCTCCAACATGAATATTAAATGACTGGCTTTGATCGATAAATGCTCC 1449 Query 52966 CCTGTCTGCAGCCATTTTTATGATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATAAAC 53025 || || ||||||||| || | | || || |||||||||| |||||| |||| Sbjct 1450 TCTATCAGCAGCCATTAAAATTGTTGATTTAACTGATATTTCCCAAACAGTTTTGTAAAG 1509 Query 53026 -TCGCTTAATATCTTCTGGAAGGTTTG---TATTCTGAATAGATCCACCATCTACC-ATA 53080 || | || | | || ||| | || |||| ||||| || |||| ||| || Sbjct 1510 ATCCCGTA-TGTTTTGTGGTATACTTTCGATATTTTGAATGGAACCACGG-CTAGATATT 1567 Query 53081 ATCCTATTCTTGATCTCATCATTCCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGC 53140 || || || || | |||| ||| || | | ||||||| | |||| || | || Sbjct 1568 ATTTCGTTTTTCATTTGTTCATCCCACAAATCTAGTTCGGTTAGATCTCTTAGTAAGTGA 1627 Query 53141 GGATTAACTACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATAC 53200 | ||||| ||||||||||| || |||||||||| ||| ||||||||||| |||||| Sbjct 1628 TGGTTAACCACTTGAAATTCGCCCGACAATACTCGCCGCGTGTAAATATTTGACGTATAC 1687 Query 53201 GGTTCCACAGACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCC 53260 ||||| | ||| || |||||||||||||| || || || ||||| || ||||| |||||| Sbjct 1688 GGTTCAAAAGATTCGTTATTTCCCAAAATCTGCGCGGTGGATGCTGTTGGCATTGGTGCC 1747 Query 53261 ACCAATAAACTATTTCTAAGACCGTATGTTCTGATTTTATCTTTTAGAGGTTCCCAATTC 53320 || | || | || || | ||| ||| | | ||||||| ||||| | ||||| | Sbjct 1748 ACAAGTAGAGAGTTCCTTATACCATATTTCTTTATTTTATTTTTTAAATCAATCCAATCC 1807 Query 53321 CAAAGATCCGACGGTACAACNNNNNNNNNNNNNNNTTGTAGAATACCGTTACTGGCGTAC 53380 || | || | || || || || || || || ||| || Sbjct 1808 CACAAATTTGTAGGAGTTACTCCCCACATATCATACTGCAGTATTCCCTTGCTGACGGGA 1867 Query 53381 GATCCTACATATGTATCGTATGGTCCTTCCTTCTCAGCTAGTTCACAACTCGCCTCTAAT 53440 ||| ||||||| || |||||||| || || || || |||||||| ||||| ||| Sbjct 1868 CTTCCGTCATATGTTTCATATGGTCCAAATTTTTCTGCCAGCTCACAACTTGCCTCCAAT 1927 Query 53441 GCACCGTAATAAATGGTTTCGAAGATCTTCTTATTTAGATCTTGTGCTTCCAGGCTATCA 53500 || || ||||||| ||||| ||||| | |||||| | | || | | || ||| Sbjct 1928 GCGCCAAAATAAATTGTTTCAAAGATTTGCTTATTCAAAAGAAACGCGTTCTCACTTTCA 1987 Query 53501 AATGGATAATTTAAGAGAATAAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGT 53560 | || || | | | |||||| ||||| || | ||||||||||||||||| |||||| Sbjct 1988 TAAGGGTATCTCATTAAAATAAAAGCGTCGGCCAGCCCTTGAACACCAATACCAATAGGT 2047 Query 53561 CTATGTCTCTTATTAGAGATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATT 53620 ||||||| | ||| || ||| ||||| || | ||||||||||| | ||| || ||| Sbjct 2048 CTATGTCGCAAATTCGATTTTTTTGCTTCGGGTAATGGATAATAATTTACATCAATTATT 2107 Query 53621 TTATTGAGGTTTCTG---ACAATTACTTTGACCACATCCTTCAGTTTGAGAAAATCAAA- 53676 ||||| | || || || ||| | ||||| || || | ||| ||| ||||| Sbjct 2108 TTATTTAAATTCTTGGTGACTATTTTTGTGACC---TCTTTTAATTTTTTAAAGTCAAAG 2164 Query 53677 ---TTGTCCATCTATTACAAACATGTTCAATGCAATAGATGCCAGATTACAAACGGCTAC 53733 || ||| || | |||||||| || || ||||| || || || || |||||||||| Sbjct 2165 ACTTTATCCG-CTGTCACAAACATATTTAAAGCAATCGAAGCGAGGTTGCAAACGGCTAT 2223 Query 53734 CTCATTAGCATCCGCATATTGTATTATCTCAGTGCAAAGATTACTACACTTGATGGTTCC 53793 ||||| | ||| ||||| | || ||||| || |||||||| || || || || || Sbjct 2224 CTCATCTGGTGCCGAATATTCAACAATTTCAGTACATAGATTACTGCATTTTATAGTACC 2283 Query 53794 TAAATTTTGTTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAATGAATGGCGTACC 53853 | |||||||| || || ||| | || || | ||| || || || || |||| ||||| Sbjct 2284 GAGGTTTTGTTGGTTGCTTTTTCTATTGCATGAATCTTTGTATAGCATATATGGGGTACC 2343 Query 53854 AGTTTCAATCTGGGATTCTATAATCGCTTTCCAGACGACACGAGCCTTTA-TTATAGATT 53912 ||||| | || | ||||||||||| ||| | | | || |||| || | ||| Sbjct 2344 TGTTTCCACTTGTGCCTCTATAATCGCAAACCAAAGGGACTGGGCTTTTACTTTTCTATT 2403 Query 53913 TGTATCTCTTTTCTCTTTCGTATAGTGT--ATACAATCGTTCAAACTCGTCTCCCCAAAC 53970 | | | | ||||||| ||| | | |||||| ||||| || |||||||| Sbjct 2404 CG---CGCGTCCCTCTTTCTCATATTTTTCATACAAGGTCTCAAATTCCGAACCCCAAAC 2460 Query 53971 ATTGTCCAATCCAGGACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCAC 54030 | | ||| |||||||| | | || ||||| | ||||| ||| ||| | | | || Sbjct 2461 TTCATGCAAGCCAGGACACTTGTGAGGGCACATAAGGGACCAATCTTCGTTAGCTTCAAC 2520 Query 54031 TCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGTTC 54090 |||||||||||| | ||| |||||||| | ||| ||||| ||| | | ||||||||| Sbjct 2521 TCGTTTCATAAACAAATCGGGAATCCACAAAGCATAAAATAAATCACGAGCTCTATGTTC 2580 Query 54091 CTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTC 54150 || || || || || || || | ||| | ||| | | ||||||||| ||||| || || Sbjct 2581 TTCCTTGCCCGTGTTTTTCTTTAAATCCAAAAACTCAAAAATATCAGAGTGCCAAGGCTC 2640 Query 54151 CAAGTATATGGTCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGT 54210 ||||| || | | | ||||||||| ||| ||||| || || | ||| | || Sbjct 2641 TAAGTAGATTGCAAAAGCTCCAGGCCTTTTTCCGCCTCCTTGGTCAACGTAGCGGGCCAC 2700 Query 54211 GTTATTATAAACTCTCAACATTGGAATAATACCATTGGATGCACCATTGGTCCCGGAGAT 54270 || || ||||||| | |||||| | | || || || | ||||| || || || || Sbjct 2701 ATTGTTGAAAACTCTTAGCATTGGCACCAGGCCGTTAGAAGTTCCATTAGTTCCTGATAT 2760 Query 54271 ATAGCTTCCACTGGCACGAATATTACTAATTGATAGACCTATCCCCCCTGCCATTTTAGA 54330 | | | || | || || || | || || || || || || || |||||| Sbjct 2761 AGATGTGCCTTTAGCTCGTATGCAATGAACATTTATTCCAATACCTCCAGCTGATTTAGA 2820 Query 54331 GATTAATGCGCATCGTTTTAACGTATCATAGATGCCCTCTATACTATCATCCATCATGTT 54390 || | |||||| ||| | | | | | || || || || ||| | | ||| | Sbjct 2821 TATCATAGCGCATTGTTCAACTGATTTAAAAATACCTTCAATTGAATCTGCAACCATTGT 2880 Query 54391 AAGTAGAAAACAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGA 54450 |||||| || || || | ||| | ||| | ||| | ||| ||| | || || || Sbjct 2881 AAGTAGGAAGCAAGATGAAAGTTGCGGTCGAATTGTTGCAGCAGCAAAAAGTGTCGGTGA 2940 Query 54451 AGCGTGCGTAAACCATTTTTCAGAAAG-TAGATTGTACGTCTCGATAGCTGAGTCTATAT 54509 || |||||||| || |||| || || ||| ||||| || || || || || ||||||| Sbjct 2941 TGCATGCGTAAAAAATCTTTCCGACAGATAG-TTGTAGGTTTCAATTGCGGAATCTATAT 2999 Query 54510 CCCATTGATGAATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCT 54569 | |||||| |||| | || | ||| ||||||||||||||||||||| |||| | Sbjct 3000 CATCACCATGAATACCTATAGACACCCTCATCAACATGTGCTGAGGTCTTTCAGCGATTT 3059 Query 54570 TGTTGTTTATTTTCAGCAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATG 54629 || ||| ||||||| || || || ||| | |||||||| |||||||| ||||| Sbjct 3060 TGCCGTTGATTTTCAATAAATAAGACCGTTCAAGTGTTTTAAATCCAAAATAATTGTAGC 3119 Query 54630 AAAAGTCTCGTTCGTAAATAATAACTGAGTTGAG 54663 ||| || || || || || ||| ||||||| || Sbjct 3120 CAAAATCACGATCATATATGATAGCTGAGTTCAG 3153 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 593475457867680