Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Themira_20minor_20[genbank_20GCA_5F001014575.1_202015-05-28] 33,166 sequences; 99,885,510 total letters Query= NC_001875.2 Length=131995 Score E Sequences producing significant alignments: (Bits) Value seq31959 114 1e-20 >seq31959 Length=2257 Score = 114 bits (126), Expect = 1e-20 Identities = 108/138 (78%), Gaps = 0/138 (0%) Strand=Plus/Plus Query 23811 GTTGCCCAGGTCGCCGACGTGTCGCTCCGCGGCGTCGGGCGCGCCGTGTCTCTGGCGGGT 23870 ||||||||||||||||| || |||||| || || ||| |||||||| || || Sbjct 794 GTTGCCCAGGTCGCCGAGATGGCGCTCCTCGTCGGTGGGGGCGCCGTGCTCCTTGCCCAG 853 Query 23871 GGGGTTAAAGTGCTCGCCAGCGGACGTGCAGCCGTTGCTGGTGTCGCCGAATTCGTGCAC 23930 ||||| ||||| ||| ||||| ||||||||||| || |||||||||| |||||||| Sbjct 854 CGGGTTGAAGTGGGGGCCGGCGGAGATGCAGCCGTTGGTGTTGTCGCCGAACTCGTGCAC 913 Query 23931 GTGAAAACCGTGCAGCCC 23948 || || ||||||||||| Sbjct 914 ATGGAAGCCGTGCAGCCC 931 Score = 86.0 bits (94), Expect = 5e-12 Identities = 104/142 (73%), Gaps = 0/142 (0%) Strand=Plus/Plus Query 23626 CCGCAGCCCAGCCGGCCGCCAGAATTGCCCGTGGTCTTGCTGAGCGGGTGCTCGCCGAGG 23685 |||||||| | ||| | |||| |||||| ||||||||||| ||| ||| |||| | Sbjct 521 CCGCAGCCGACGCGGGCCCCAGCATTGCCGGTGGTCTTGCTCAGCTCGTGGCCGCCCTTG 580 Query 23686 CCCAGGTCATCGCGGTCCGTGTGCACGACCAGGCTGCGGCCCAATATACTCAACGGCCCA 23745 |||||||| ||| | || | ||||||||||| | |||| || | || || | ||| Sbjct 581 CCCAGGTCGTCGGGATCGGCGTGCACGACCATGGTGCGCCCGATGATGCTGTTGGCCCCG 640 Query 23746 AACAGGGTTATCACGTTGTCGC 23767 ||||| | ||| |||||||| Sbjct 641 AACAGCGAGATCTTGTTGTCGC 662 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 422088518344856