Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Themira_20minor_20[genbank_20GCA_5F001014575.1_202015-05-28] 33,166 sequences; 99,885,510 total letters Query= NC_001973.1 Length=161046 Score E Sequences producing significant alignments: (Bits) Value seq7146 464 6e-126 seq31959 127 2e-24 >seq7146 Length=6253 Score = 464 bits (514), Expect = 6e-126 Identities = 551/756 (73%), Gaps = 36/756 (5%) Strand=Plus/Plus Query 116655 AGGCCGAGGCGTCGTTCTGGACCGTCGAGGAGGTGGACCTGTCCAAGGACACGAGCGACT 116714 |||| || || || || ||||| || || ||||||||||| |||||||||| || ||||| Sbjct 5185 AGGCTGAAGCCTCATTTTGGACGGTTGAAGAGGTGGACCTCTCCAAGGACATGACCGACT 5244 Query 116715 GGGAGCGCTTGAACGACAACGAGCGCCATTTCAT-------------------------- 116748 |||| || | | |||||||||||| || ||||| Sbjct 5245 GGGAACGGCTCACCGACAACGAGCGTCACTTCATTTCGCACGTGCTGGCCTTCTTCGCCG 5304 Query 116749 -CAA---------GCACGTGCTGGCCTTTTTCGCCGCCAGCGACGGCATCGTCAACGAGA 116798 | | ||||||||||||||| ||||||||| ||| ||||| |||||||||| Sbjct 5305 CCNACTTCATTTCGCACGTGCTGGCCTTCTTCGCCGCCTCCGATGGCATTGTCAACGAGA 5364 Query 116799 ATCTGGTCGAGCGTTTCGCTCAGGAGGTGCAGGTGGCCGAGGCGCGGTGCTTCTACGGCT 116858 ||||||| ||||||||| || |||||||| ||| | |||||||| ||||||||||||| Sbjct 5365 ATCTGGTGGAGCGTTTCAGCCAAGAGGTGCAAGTGACAGAGGCGCGCTGCTTCTACGGCT 5424 Query 116859 TTCAGATCGCCATGGAGAACGTGCACTCGGAAATGTATTCGACCCTCATCGACACGTACG 116918 | ||||||||||||||||| || |||||||| ||||| | || || ||||| ||| Sbjct 5425 TCCAGATCGCCATGGAGAATGTCCACTCGGAGATGTACAGCATTCTGATTGACACCTACA 5484 Query 116919 TGCGCTCTTCGGAGGAGAAGCTCCGTTTGTTGAACGCCATCGAGACGATGCCGTGCGTCA 116978 | | | || | || | | |||| || || |||| || ||||| |||| Sbjct 5485 TCAGGGATCCGCATCAGCGGGACTTCCTGTTCAATGCGGTCGAAACATTGCCGGCGGTCA 5544 Query 116979 AAGAGAAGGCCGAGTGGGCGCTGCGCTGGATCGCCGGCAGAGAGGCCGCCTTCGGCGAGC 117038 | |||||||||| |||||| || |||||| || | |||| |||||| |||| Sbjct 5545 AGAAGAAGGCCGACTGGGCGATGGCATGGATCTCCTCGAAGTCGGCCAACTTCGGTGAGC 5604 Query 117039 GCCTGGTGGCCTTCGCGGCCGTCGAGGGCGTCTTCTTTTCGGGCAGTTTCGCCGCCATAT 117098 || | | || ||||| |||||||||||| | ||||| ||||||||||||||| | || | Sbjct 5605 GCATCATTGCGTTCGCCGCCGTCGAGGGCATTTTCTTCTCGGGCAGTTTCGCCTCGATCT 5664 Query 117099 TTTGGCTCAAGAAACGCGGCCTCATGCCCGGCCTGACTTTCAGCAACGAGCTCATCTCCA 117158 | ||||| ||||| |||||||||||||||||||| || ||| ||||||| | ||||| Sbjct 5665 TCTGGCTGAAGAAGCGCGGCCTCATGCCCGGCCTCACCTTCTCCAACGAGTTGATCTCAC 5724 Query 117159 GGGACGAGGGTCTGCATTGCGACTTTGCCTGTTTGCTGTTCAAGCATTTGGTGCAGCGAC 117218 | |||||||| |||||||| || || ||||| || ||||| ||||| |||||||||| | Sbjct 5725 GCGACGAGGGCCTGCATTGTGATTTCGCCTGCCTGATGTTCCAGCATCTGGTGCAGCGTC 5784 Query 117219 CGAGCGCGGCGCGCGTCAGGGAGATCGTCACCGACGCGGTCGCCATCGAGCAGCGCTTCC 117278 | ||| | ||| ||| |||||| || ||| ||||| ||||| ||| |||| Sbjct 5785 CCAGCCGCGAACGCATCATCGAGATCATCGACGAAGCGGTGAAGATCGAACAGGAGTTCC 5844 Query 117279 TCACCGAAGCGCTGCCGGTGCGTCTGCTGGGACTCAATTGCGAAACGATGTCGCAATACA 117338 ||||||||||||||||||| | || | || | || ||| || |||||| | |||| Sbjct 5845 TCACCGAAGCGCTGCCGGTCAATTTGATCGGCATGAACTGCAAACTGATGTCCGAGTACA 5904 Query 117339 TCGAGTTCGTCGCCGACAGGCTGCTGCTCGAGCTGG 117374 |||| ||||| |||||| | |||||| |||| |||| Sbjct 5905 TCGAATTCGTGGCCGACCGTCTGCTGGTCGAACTGG 5940 >seq31959 Length=2257 Score = 127 bits (140), Expect = 2e-24 Identities = 134/176 (76%), Gaps = 3/176 (2%) Strand=Plus/Minus Query 139373 GGCCTGCACGGCTTCCACGTGCACGAGTTCGGCGACGCGAGCAACGGGTGCACGTCGGCC 139432 || |||||||||||||| |||||||||||||||||| | |||||| |||| || ||| Sbjct 931 GGGCTGCACGGCTTCCATGTGCACGAGTTCGGCGACAACACCAACGGCTGCATCTCCGCC 872 Query 139433 GGCGAGCACTTCAACCCCGCGCGCCGGGACCACGGCGCGCCCGACGCCGAGATCAGGCAC 139492 ||| ||||||||||| | || ||| |||||||| ||| || |||| | || Sbjct 871 GGCCCCCACTTCAACCCGCTGGGCAAGGAGCACGGCGCCCCCACCGACGAGGAGCGCCAT 812 Query 139493 GTCGGCGACCTGGGCAACCTCGAGTCGGCGGGCCGCGACGCGCTCACCGAGGTGAG 139548 ||||||||||||||||| |||| ||| || |||| || | |||| ||||||| Sbjct 811 CTCGGCGACCTGGGCAACATCGA---GGCCAGCGGCGATGCCCCCACCAAGGTGAG 759 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 515005603000160