Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Themira_20minor_20[genbank_20GCA_5F001014575.1_202015-05-28] 33,166 sequences; 99,885,510 total letters Query= NC_002169.1 Length=135611 Score E Sequences producing significant alignments: (Bits) Value seq3053 111 1e-19 seq31959 102 7e-17 seq15048 102 7e-17 >seq3053 Length=25279 Score = 111 bits (122), Expect = 1e-19 Identities = 150/209 (72%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 118530 ACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCG 118589 |||| || | ||| ||||| ||||||||||| |||||| || || || ||| || Sbjct 10171 ACCAGATGTAATGTTGACTCCTTTTGAATGTTATAATCGGACAATGTACGTCCATCTTCT 10112 Query 118590 AGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTA 118649 | || |||||||| | || ||||| || ||||| ||||| || ||||| ||||| | Sbjct 10111 AATTGCTTTCCAGCAAAAATTAGACGTTGTTGATCTGGAGGAATTCCCTCTTTGTCCTGA 10052 Query 118650 ATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTG 118709 || || ||| || | |||| ||||||| |||||||| | ||| | || || Sbjct 10051 ATCTTGGCTTTCACATTCTCGATTGTGTCCGAAGGTTCGACCTCTAAGGTGATGGTCTTC 9992 Query 118710 CCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 || || || ||||||||||| |||||||| Sbjct 9991 CCCGTGAGGGTTTTTACAAAGATCTGCAT 9963 >seq31959 Length=2257 Score = 102 bits (112), Expect = 7e-17 Identities = 112/149 (75%), Gaps = 0/149 (0%) Strand=Plus/Plus Query 47170 GCTTCAATGTTACCCAGATCGCCTACGTGACGCTCGGCGGCGTTGGGAGCGCCGTGATTG 47229 || || ||||| ||||| ||||| | || ||||| || || |||| |||||||| | Sbjct 786 GCCTCGATGTTGCCCAGGTCGCCGAGATGGCGCTCCTCGTCGGTGGGGGCGCCGTGCTCC 845 Query 47230 CGGCCCAACGGATTATAGTGTTCGCCGGCCGACGTGCAGCCGTTGCTCGTGTCGCCGAAT 47289 ||||| ||| || |||| |||||| || ||||||||||| | |||||||||| Sbjct 846 TTGCCCAGCGGGTTGAAGTGGGGGCCGGCGGAGATGCAGCCGTTGGTGTTGTCGCCGAAC 905 Query 47290 TCGTGCACGTGAAATCCGTGAAGCCCCTT 47318 |||||||| || || ||||| ||||| || Sbjct 906 TCGTGCACATGGAAGCCGTGCAGCCCTTT 934 >seq15048 Length=4365 Score = 102 bits (112), Expect = 7e-17 Identities = 226/337 (67%), Gaps = 19/337 (6%) Strand=Plus/Plus Query 133221 TGGTTGACCACTTGAAACTCGCCGGCGAGAACGCGTCTGAGATATACATTCGACGTGAAC 133280 ||||| ||||||||||| ||||| | | || || | || | ||| ||||| || Sbjct 1628 TGGTTAACCACTTGAAATTCGCCCGACAATACTCGCCGCGTGTAAATATTTGACGTATAC 1687 Query 133281 GGTTCGAAAGATTCGTTGTTGCCGAGTATCTGCGCCGTCGTCGCCGTGGGCATGTACGCC 133340 ||||| ||||||||||| || || | |||||||| || | || || ||||| ||| Sbjct 1688 GGTTCAAAAGATTCGTTATTTCCCAAAATCTGCGCGGTGGATGCTGTTGGCATTGGTGCC 1747 Query 133341 ACCAACAAAGAGTTTCTTACGCCGTACTTGTTTATGTTGCACTGCAATTCGTTCCAGTCC 133400 || | | |||||| |||| || || || ||||| || | || || |||| ||| Sbjct 1748 ACAAGTAGAGAGTTCCTTATACCATATTTCTTTATTTTATTTTTTAAATCAATCCAATCC 1807 Query 133401 CACAGA-TTGTTGGAATGATAGACGCCGTTCTCGTCGTCGTAGTTGTGAAAATGCAAAAT 133459 |||| | |||| ||| | | ||| | | | | | | |||| || Sbjct 1808 CACAAATTTGTAGGAGT-----------TACTC-----CCCACATATCATACTGCAGTAT 1851 Query 133460 ACCCCTGCTCACCGGACTGTCCGT-GTACGATTCATAGGGTCCGTTGATTTTGGCCAGCT 133518 ||| |||| || ||||| ||||| || | |||||| ||||| ||| ||||||| Sbjct 1852 TCCCTTGCTGACGGGACT-TCCGTCATATGTTTCATATGGTCCAAATTTTTCTGCCAGCT 1910 Query 133519 CGCAGCTAGCCTCCAAAGCGGCAAAGTAAATGGTTTC 133555 | || || |||||||| ||| |||| ||||| ||||| Sbjct 1911 CACAACTTGCCTCCAATGCGCCAAAATAAATTGTTTC 1947 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433655041142872