Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Themira_20minor_20[genbank_20GCA_5F001014575.1_202015-05-28] 33,166 sequences; 99,885,510 total letters Query= NC_002331.1 Length=178733 Score E Sequences producing significant alignments: (Bits) Value seq8405 104 3e-17 seq8890 98.7 1e-15 seq25582 96.9 4e-15 seq3053 93.3 5e-14 seq29710 91.5 2e-13 >seq8405 Length=2727 Score = 104 bits (114), Expect = 3e-17 Identities = 72/82 (88%), Gaps = 0/82 (0%) Strand=Plus/Minus Query 60057 AAAAATTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATAC 60116 ||||||| ||||| || | |||||| |||||| ||||||||||||||||||||| |||| Sbjct 2244 AAAAATTATCTCCCCGACGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGATAC 2185 Query 60117 TCACCACTATACTACCGAGGAT 60138 | |||||||||||| ||||||| Sbjct 2184 TGACCACTATACTATCGAGGAT 2163 >seq8890 Length=5443 Score = 98.7 bits (108), Expect = 1e-15 Identities = 73/84 (87%), Gaps = 1/84 (1%) Strand=Plus/Minus Query 60057 AAAAATTT-TCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATA 60115 ||| |||| ||||| || | |||||| |||||| ||||||||||||||||||||| ||| Sbjct 2068 AAATATTTATCTCCCCGACGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGATA 2009 Query 60116 CTCACCACTATACTACCGAGGATT 60139 || |||||||||||| |||||||| Sbjct 2008 CTGACCACTATACTATCGAGGATT 1985 Score = 96.9 bits (106), Expect = 4e-15 Identities = 74/87 (85%), Gaps = 3/87 (3%) Strand=Plus/Minus Query 60057 AAAAATT---TTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACA 60113 ||||||| | |||| || | |||||| |||||| ||||||||||||||||||||| | Sbjct 961 AAAAATTGGATCCTCCCCGACGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGA 902 Query 60114 TACTCACCACTATACTACCGAGGATTG 60140 |||| |||||||||||| ||||||||| Sbjct 901 TACTGACCACTATACTATCGAGGATTG 875 >seq25582 Length=1440 Score = 96.9 bits (106), Expect = 4e-15 Identities = 67/76 (88%), Gaps = 0/76 (0%) Strand=Plus/Minus Query 60065 TCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACT 60124 ||||| || | |||||| |||||| ||||||||||||||||||||| ||||| |||||| Sbjct 269 TCTCCCCGACGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTGACCACT 210 Query 60125 ATACTACCGAGGATTG 60140 |||||| ||||||||| Sbjct 209 ATACTATCGAGGATTG 194 >seq3053 Length=25279 Score = 93.3 bits (102), Expect = 5e-14 Identities = 150/213 (70%), Gaps = 2/213 (1%) Strand=Plus/Minus Query 42975 ACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCT 43034 |||| ||| ||||| |||||||||||| || ||||| | || || || | || ||| Sbjct 10171 ACCAGATGTAATGTTGACTCCTTTTGAATGTTATAATCGGACAATGTACGTCCATCTTCT 10112 Query 43035 AGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATG 43094 | ||||| ||||| || || || || || || || | || | | ||| |||||| || Sbjct 10111 AATTGCTTTCCAGCAAAAATTAGACGTTGTTGATCTGGAGGAATTCCCTCTTTGTCC-TG 10053 Query 43095 ATTTTTTG-TTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTT 43153 | | || | ||| | || | | ||||| | ||| || || | |||||||| || Sbjct 10052 AATCTTGGCTTTCACATTCTCGATTGTGTCCGAAGGTTCGACCTCTAAGGTGATGGTCTT 9993 Query 43154 GCCCGTTAGCGTCTTTACAAAGATTTGCATTTT 43186 ||||| || || ||||||||||| |||||||| Sbjct 9992 CCCCGTGAGGGTTTTTACAAAGATCTGCATTTT 9960 >seq29710 Length=1637 Score = 91.5 bits (100), Expect = 2e-13 Identities = 64/73 (88%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 |||| || | |||||| |||||| ||||||||||||||||||||| ||||| ||||||| Sbjct 262 CTCCCCGACGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTGACCACTA 203 Query 60126 TACTACCGAGGAT 60138 ||||| ||||||| Sbjct 202 TACTATCGAGGAT 190 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 571580538718480