Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Themira_20minor_20[genbank_20GCA_5F001014575.1_202015-05-28] 33,166 sequences; 99,885,510 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq15048 508 5e-139 seq7146 315 6e-81 seq3053 96.9 3e-15 >seq15048 Length=4365 Score = 508 bits (562), Expect = 5e-139 Identities = 1250/1890 (66%), Gaps = 29/1890 (2%) Strand=Plus/Plus Query 22106 TTGTCCACTGTAAACTGTATGGCGTTTGCGGCCGGTTTGGTGCGAAGATAATACATGCCC 22165 ||||| || || || || ||||| || || || ||||| || | ||| |||||||| || Sbjct 1283 TTGTCAACCGTGAATTGAATGGCATTCGCTGCTGGTTTAGTTCTAAGGTAATACATTCCA 1342 Query 22166 GTCTTCAGACCCATCTTCCACGCGTAAAAATGTATCGACGTCAATTTTCCATAACTCGGC 22225 || || ||||| |||||||| | ||||| ||||| || || || |||||| | ||| Sbjct 1343 GTTTTTAGACCAGCTTTCCACGCAAAGAAATGAATCGATGTTAACTTCCCATAATTTGGC 1402 Query 22226 AAGTCCATGTACACATTGAACGACTGACTCTGATCGATAAACGCTCCTCGATCGGCGGCC 22285 | | | | ||| || ||||| || ||||||||||| ||||||| ||| || ||| Sbjct 1403 TCTCCAACATGAATATTAAATGACTGGCTTTGATCGATAAATGCTCCTCTATCAGCAGCC 1462 Query 22286 AT---ATTTATCAATGTACGCATCGACATTTCCCATACGGTCTTGTACAGTTGCCTGATC 22342 || | || | || || | || |||||||| || || ||||| || | || || Sbjct 1463 ATTAAAATTGTTGATTTA---ACTGATATTTCCCAAACAGTTTTGTAAAGATCCCGTATG 1519 Query 22343 TCTAACGGTATCGATTCGATCCTCTGGACGGACCCGTTATTGTGTATGATCAAATTTTTA 22402 | | ||||| |||||| | || | ||| || | ||| || ||||| Sbjct 1520 TTTTGTGGTATACTTTCGATATTTTGAATGGAACCACGGCTAGATATTATTTCGTTTTTC 1579 Query 22403 ATCGTATCGTTCCACAAACCGATGGCGGTCAAATCTTTGACCAGATGACGGTTCACCACT 22462 || || | ||||||| | | |||| | |||| | | | ||| |||| |||||| Sbjct 1580 ATTTGTTCATCCCACAAATCTAGTTCGGTTAGATCTCTTAGTAAGTGATGGTTAACCACT 1639 Query 22463 TGAAACTCGCCGGACAAGACGCGGCGTTGGTAAATGTTGGATGTGAACGGTTCGAAAGAT 22522 ||||| ||||| ||||| || || || |||||| || || || ||||||| |||||| Sbjct 1640 TGAAATTCGCCCGACAATACTCGCCGCGTGTAAATATTTGACGTATACGGTTCAAAAGAT 1699 Query 22523 TCATTGTTTCCCAGTATCTGAGCGGTCGAAGCGGTCGGCATCGGCGCCAACAGTAGCGAG 22582 || || ||||||| ||||| ||||| || || || ||||| || |||| ||||| ||| Sbjct 1700 TCGTTATTTCCCAAAATCTGCGCGGTGGATGCTGTTGGCATTGGTGCCACAAGTAGAGAG 1759 Query 22583 TTTCTCAAGCCGTGCTTTGAAATTTTACTCTTGAGCATCGA-CCAGTCCCACAGATCGGA 22641 || || | || | || |||||| | || | ||| | ||| ||||||| || | Sbjct 1760 TTCCTTATACCATATTTCTTTATTTTATTTTTTA-AATCAATCCAATCCCACAAATTTGT 1818 Query 22642 CGGCGTCACATTGTCCCACATATCGTATTGCAACACGCCGCGACTCGCCGGGCTGCCTTC 22701 || || || |||||||||| || |||| | || || | || || || || Sbjct 1819 AGGAGTTAC---TCCCCACATATCATACTGCAGTATTCCCTTGCTGACGGGACTTCCGTC 1875 Query 22702 GTACGTTTCGTACGGACCATATATCGCGGCAAGTTCGCAGCTCGCCTCCAACGCGCCGTA 22761 || ||||| || || ||| || | | || || || || || |||||||| ||||| | Sbjct 1876 ATATGTTTCATATGGTCCAAATTTTTCTGCCAGCTCACAACTTGCCTCCAATGCGCCAAA 1935 Query 22762 ATATATAGTCTCGAAGATTTTCTTGTTCAATTCGGCGGCGGCGACGCTTTCGTACGGCAT 22821 ||| || || || ||||||| ||| ||||| ||| | ||||| || || Sbjct 1936 ATAAATTGTTTCAAAGATTTGCTTATTCAAAAGAAACGCGTTCTCACTTTCATAAGGGTA 1995 Query 22822 ACGCATCATCACGAACGCGTCCGCCATACCCTGAACGCCTATACCGATCGGTCGGTTTTT 22881 | ||| | | || ||||| |||| || ||||| || ||||| || |||| | | Sbjct 1996 TCTCATTAAAATAAAAGCGTCGGCCAGCCCTTGAACACCAATACCAATAGGTCTATGTCG 2055 Query 22882 CAGATTCGACACTTTTGCCTCGGGCAAAGGATACCAATTCGAATCGATTGTTCTGTTCAA 22941 || |||||| |||||| ||||| || ||||| |||| ||| ||| || | || || Sbjct 2056 CAAATTCGATTTTTTTGCTTCGGGTAATGGATAATAATTTACATCAATTATTTTATTTAA 2115 Query 22942 GTTTCTGGTCACAATTTTCGTTATNNNNNNNNNNNNNTCAAAGTCGTAAAC---GCCCGA 22998 || |||| || ||||| || | | |||||| | || ||| Sbjct 2116 ATTCTTGGTGACTATTTTTGTGACCTCTTTTAATTTTTTAAAGTCAAAGACTTTATCCG- 2174 Query 22999 TTGTACAACAAACTTGTTGACGGCGATCGAGGCAAGATTGCATACGGCCACCTCGTCTTT 23058 ||| |||||| | || | || ||||| || || ||||| ||||| | ||| ||| Sbjct 2175 CTGT--CACAAACATATTTAAAGCAATCGAAGCGAGGTTGCAAACGGCTATCTCATCTGG 2232 Query 23059 GGACGTGTACTCTACAATTTCGGTACATAGATTGCTACACTTTATCGTGCCCAAATTGCT 23118 | || || || |||||||| ||||||||||| || || ||||| || || | || Sbjct 2233 TGCCGAATATTCAACAATTTCAGTACATAGATTACTGCATTTTATAGTACCGAGGTTTTG 2292 Query 23119 CTGGTTGCTTTTTCGATTGCACGAATCCTTGTAGAGCATGTACGGCGTGCCCGTCTCGAC 23178 ||||||||||||| |||||| ||||| ||||| ||||| || || || || || || || Sbjct 2293 TTGGTTGCTTTTTCTATTGCATGAATCTTTGTATAGCATATATGGGGTACCTGTTTCCAC 2352 Query 23179 CTGCGACTCGATGATCGCTCGCCACATAGTCTGAGCGTGAA-----CACGTCGCACGTAC 23233 || | ||| || ||||| ||| | | ||| || | | | |||| ||| Sbjct 2353 TTGTGCCTCTATAATCGCAAACCAAAGGGACTGGGCTTTTACTTTTCTATTCGCGCGT-- 2410 Query 23234 CTGCCTTCTTCCTCGTACTTTTGGTACAACGCGTCAAATTCGGCACCGTAACAGTCGGCC 23293 || |||| ||| || |||| ||||| | |||||||| | ||| || || | Sbjct 2411 ---CCCTCTTTCTCATATTTTTCATACAAGGTCTCAAATTCCGAACCCCAAACTTCATGC 2467 Query 23294 AGGCCGGGCGATTGCATCGGACACATGAGACTCCACATTGAGTCATTTTCAACGCGTCTC 23353 | ||| || | | || ||||| || ||| | || | |||||| ||| || Sbjct 2468 AAGCCAGGACACTTGTGAGGGCACATAAGGGACCAATCTTCGTTAGCTTCAACTCGTTTC 2527 Query 23354 ATAAAAAGATCCGGTATCCATAGAGCGTAGAACAGTTCGCGGGCGCGCACCTCCTCTTTG 23413 ||||| | ||| || ||||| | ||| || || | || || || | || || ||| Sbjct 2528 ATAAACAAATCGGGAATCCACAAAGCATAAAATAAATCACGAGCTCTATGTTCTTCCTTG 2587 Query 23414 CCGGTGTTCTTTTTCAAATCCAAAAAGTCCAACACGTCCGCATGCCACGGCTCGAGGTAA 23473 || ||||| || || ||||||||||| || || | || | ||||| ||||| | ||| Sbjct 2588 CCCGTGTTTTTCTTTAAATCCAAAAACTCAAAAATATCAGAGTGCCAAGGCTCTAAGTAG 2647 Query 23474 ACGGCAAACGCGCCCGGTCTCTTATTGCCGCCCTGATCGACGTAACGGGCCGTGTTGTTG 23533 | ||||| || || || || || ||| || || || ||||| |||||| |||||| Sbjct 2648 ATTGCAAAAGCTCCAGGCCTTTTTCCGCCTCCTTGGTCAACGTAGCGGGCCACATTGTTG 2707 Query 23534 TACACTCTTAGCATCGGCACGAGACCGTTGGACGCGCCGCCTACGCCCGCCACACTCGAA 23593 | ||||||||||| ||||| || ||||| || | || || | | | | Sbjct 2708 AAAACTCTTAGCATTGGCACCAGGCCGTTAGAAGTTCCATTAGTTCCTGATATAGATGTG 2767 Query 23594 CCTTTTGCTCGAACGTTGTGAACGTGGAAACCTATGCCTCCGCCCGATTTCGATATCATC 23653 ||||| ||||| | | ||||| | | || || ||||| | ||||| |||||||| Sbjct 2768 CCTTTAGCTCGTATGCAATGAACATTTATTCCAATACCTCCAGCTGATTTAGATATCATA 2827 Query 23654 GCGCATTGTTTCAGAGTGTCGTAGATGCCCTCGATGCTGTCCTCTTTGGTCGCGACCAAG 23713 |||||||||| | | | | || || || || || | | | | | | Sbjct 2828 GCGCATTGTTCAACTGATTTAAAAATACCTTCAATTGAATCTGCAACCATTGTAAGTAGG 2887 Query 23714 AAACACGAAGACATTTGCGCTTTGGGCGTAGCGGCCGAGAACAGTGTCGGGCTGGCGTGC 23773 || || || || | ||||| | || || || | || |||||||| || ||| Sbjct 2888 AAGCAAGATGAAAGTTGCGGTCGAATTGTTGCAGCAGCAAAAAGTGTCGGTGATGCATGC 2947 Query 23774 GTAAAGTATCCATTCGACA-TTAGATTGTACGTGTCGATGGCGGCATCAATGTCCTCTCC 23832 ||||| ||| | ||||| ||| ||||| || || || |||| ||| || || || || Sbjct 2948 GTAAAAAATCTTTCCGACAGATAG-TTGTAGGTTTCAATTGCGGAATCTATATCATCACC 3006 Query 23833 GTGTATACCGATGGCGACGCGCATCATCATGTATTGAGGTCTCTCGACCGTGACGCCGTT 23892 || ||||| || | || | ||||| ||||| |||||||| || | | |||||| Sbjct 3007 ATGAATACCTATAGACACCCTCATCAACATGTGCTGAGGTCTTTCAGCGATTTTGCCGTT 3066 Query 23893 AATTTTGAACAGATATGAACGTTGCATCGTTTTAAATCCAAAATAGTCATAGTTAAAGTC 23952 ||||| || | ||| || |||| | ||||||||||||||||| | ||| ||| || Sbjct 3067 GATTTTCAATAAATAAGACCGTTCAAGTGTTTTAAATCCAAAATAATTGTAGCCAAAATC 3126 Query 23953 ACGATCGTGCACTATGGCCGAATTCAAACG 23982 |||||| | | || || || |||| ||| Sbjct 3127 ACGATCATATATGATAGCTGAGTTCAGACG 3156 >seq7146 Length=6253 Score = 315 bits (348), Expect = 6e-81 Identities = 451/630 (72%), Gaps = 18/630 (3%) Strand=Plus/Plus Query 57687 CACGTGTTGGCGTTTTTCGCCGCATCCGATGGTATTGTTAACGAGAATTTGGTCGAAAGA 57746 |||||| |||| || |||||||| |||||||| ||||| ||||||||| |||| || | Sbjct 5319 CACGTGCTGGCCTTCTTCGCCGCCTCCGATGGCATTGTCAACGAGAATCTGGTGGAGCG- 5377 Query 57747 TTTTCA--CAAGAAGTGCAAGTGACGGAGGCGAGATGCTTTTACGGATTTCAAGTGGCCA 57804 ||||| ||||| ||||||||||| |||||| | ||||| ||||| || || | |||| Sbjct 5378 -TTTCAGCCAAGAGGTGCAAGTGACAGAGGCGCGCTGCTTCTACGGCTTCCAGATCGCCA 5436 Query 57805 TTGAAAACGTGCATTCAGAAATGTATTCGCTACTCATCGATACGTACGTGAAGGA----C 57860 | || || || || || || ||||| | || || || || ||| | | ||| | Sbjct 5437 TGGAGAATGTCCACTCGGAGATGTACAGCATTCTGATTGACACCTACATCAGGGATCCGC 5496 Query 57861 AACGACGAGAAACGTAGACTGTTCAACGCGATCGAAACAATGCCCGCGATCGCCAAGAAG 57920 | | || || | | |||||||| ||| |||||||| |||| ||| || |||||| Sbjct 5497 ATCAGCGGGA--CTTC--CTGTTCAATGCGGTCGAAACATTGCCGGCGGTCAAGAAGAAG 5552 Query 57921 GCAGAGTGGTCAATCAAATGGATAAAAAGCGCCA---CGGCCACGTTCGCCGAGAGGCTA 57977 || || ||| | || |||||| | | | |||||| |||| ||| | | Sbjct 5553 GCCGACTGGGCGATGGCATGGATCTC---CTCGAAGTCGGCCAACTTCGGTGAGCGCATC 5609 Query 57978 ATCGCGTTCGCCGCCGTCGAAGGTATATTCTTTTCGGGCAGCTTTGCGGCAATATTTTGG 58037 || ||||||||||||||||| || || ||||| |||||||| || || | || || ||| Sbjct 5610 ATTGCGTTCGCCGCCGTCGAGGGCATTTTCTTCTCGGGCAGTTTCGCCTCGATCTTCTGG 5669 Query 58038 ATGAAGAAACGCGGCCTGATGCCCGGCCTGACGTTTAGCAACGAGTTGATATCGCGCGAC 58097 ||||||| |||||||| ||||||||||| || || |||||||||||| || |||||| Sbjct 5670 CTGAAGAAGCGCGGCCTCATGCCCGGCCTCACCTTCTCCAACGAGTTGATCTCACGCGAC 5729 Query 58098 GAGGGTCTCCATACTGATTTTGCGTGCCTAATGTACTCTCACATTGTCAATAAACCGACG 58157 ||||| || ||| |||||| || ||||| |||| | || | || | || | Sbjct 5730 GAGGGCCTGCATTGTGATTTCGCCTGCCTGATGTTCCAGCATCTGGTGCAGCGTCCCAGC 5789 Query 58158 CGGGATCGCATCTTGGACATTATCACCGAGGCGGTCGCGATCGAAAATGAGTTTGTCACC 58217 || || |||||| | || || ||| ||| ||||| ||||||| | ||||| ||||| Sbjct 5790 CGCGAACGCATCATCGAGATCATCGACGAAGCGGTGAAGATCGAACAGGAGTTCCTCACC 5849 Query 58218 GAAGCCCTACCGGTGGCCATGCTCGGTATGAACAATGATTTGATGTCAAAGTACATTGAG 58277 ||||| || ||||| || |||| |||||| | ||||||| ||||||| || Sbjct 5850 GAAGCGCTGCCGGTCAATTTGATCGGCATGAACTGCAAACTGATGTCCGAGTACATCGAA 5909 Query 58278 TTTGTTGCCGACAGACTTTTGCTCGAACTG 58307 || || |||||| | || || |||||||| Sbjct 5910 TTCGTGGCCGACCGTCTGCTGGTCGAACTG 5939 >seq3053 Length=25279 Score = 96.9 bits (106), Expect = 3e-15 Identities = 169/243 (70%), Gaps = 6/243 (2%) Strand=Plus/Plus Query 31190 AACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCG 31249 || ||||| || || ||||| || || || || || || |||||| | || || ||||| Sbjct 9960 AAAATGCAGATCTTTGTAAAAACCCTCACGGGGAAGACCATCACCTTAGAGGTCGAACCT 10019 Query 31250 TCCGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGAC 31309 || |||| |||| | || ||| | || |||||| || || | || || || Sbjct 10020 TCGGACACAATCGAGAATGTGAAAGCCAAGATTCAGGACAAAGAGGGAATTCCTCCAGAT 10079 Query 31310 CAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATG-ACTATGAGCGATTA 31368 || || |||||||| || ||||| || || || ||||| | | | || || |||||| Sbjct 10080 CAACAACGTCTAATTTTTGCTGGAAAGCAATTAGAAGA-TGGACGTACATTGTCCGATTA 10138 Query 31369 TAACATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGT----AGAA 31424 |||||||||||| || || || | |||||||| ||| | || | || ||| |||| Sbjct 10139 TAACATTCAAAAGGAGTCAACATTACATCTGGTTCTTCGTCTTCGTGGTGGTGCCAAGAA 10198 Query 31425 GCG 31427 ||| Sbjct 10199 GCG 10201 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445581596394720