Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Themira_20minor_20[genbank_20GCA_5F001014575.1_202015-05-28] 33,166 sequences; 99,885,510 total letters Query= NC_003309.1 Length=53373 Score E Sequences producing significant alignments: (Bits) Value seq23044 188 2e-43 >seq23044 Length=7840 Score = 188 bits (208), Expect = 2e-43 Identities = 221/299 (74%), Gaps = 0/299 (0%) Strand=Plus/Plus Query 1903 CCGCTCGACCCGCACGGCGCAACGAACCTGTCGCACCAGCTTGCGGACGAAGGGTTGACG 1962 ||| | ||||| ||||||||||| ||| | || ||||| || || || || || || | Sbjct 2442 CCGATTGACCCTCACGGCGCAACAAACTTATCTCACCAACTGGCTGATGAGGGATTAAAC 2501 Query 1963 CCAGTCACCATCGTGCAGAACTACACGAACATGTCGGACCCAATGAAGGAGCTTGAAGCG 2022 || ||||||| || || ||||||||||| ||||| ||||| ||||| |||||||||||| Sbjct 2502 CCTATCACCATTGTTCAAAACTACACGAATATGTCTGACCCGATGAAAGAGCTTGAAGCG 2561 Query 2023 GCGATTACGTCGGGCCGGTTCCATCACGACGGAAACCCGATCATGACATGGTGCGTTAGC 2082 |||||| | || || || || ||||| || || ||||| |||||||||||||| | | Sbjct 2562 GCGATTGCTTCAGGGCGCTTTCATCATGATGGCAACCCAATCATGACATGGTGTATGGGG 2621 Query 2083 AACGTCATCGGCAAGAACTTGCCGGGCAATGACGACGTGGTGCGCCCGATCAAGCAGGGT 2142 || || | || || | || ||||| || || || || || | || || || || Sbjct 2622 AATGTGGTGGGTAAATATTTACCGGGTAACGATGATGTCGTTAGGCCTATAAAAGAGCAA 2681 Query 2143 AACGACAACAAAATCGACGGCGCTGTTGCGCTCATCATGGCGGTGGGGCGTGCAATGCT 2201 ||||| || ||||| ||||| ||||| ||| | || ||||| | || || || ||||| Sbjct 2682 AACGAAAATAAAATTGACGGTGCTGTCGCGTTAATTATGGCTATCGGACGGGCGATGCT 2740 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 170604781472820