Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Themira_20minor_20[genbank_20GCA_5F001014575.1_202015-05-28] 33,166 sequences; 99,885,510 total letters Query= NC_003310.1 Length=196858 Score E Sequences producing significant alignments: (Bits) Value seq15048 623 1e-173 >seq15048 Length=4365 Score = 623 bits (690), Expect = 1e-173 Identities = 1283/1894 (68%), Gaps = 27/1894 (1%) Strand=Plus/Plus Query 62025 TTTATT-TTATCCTTGTCCAATGTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAG 62083 |||||| ||| ||||| | ||||||||||||| | | ||| ||||| || | || Sbjct 1270 TTTATTGTTACTTTTGTCAACCGTGAATTGAATGGCATTCGCTGCTGGTTTAGTTCTAAG 1329 Query 62084 ATAGTACATTCCCGTTTTTAGACCGAGACTCCATCCGTAAAAATGCATACTCGTTAGTTT 62143 || |||||||| ||||||||||| |||| | | ||||| || |||| || Sbjct 1330 GTAATACATTCCAGTTTTTAGACCAGCTTTCCACGCAAAGAAATGAATCGATGTTAACTT 1389 Query 62144 GGAATAACTCGGATCTGCTATATGGATATTCATAGATTGACTTTGATCGATGAAGGCTCC 62203 |||| | || ||| | | ||| ||||| | || || ||||||||||| || ||||| Sbjct 1390 CCCATAATTTGGCTCTCCAACATGAATATTAAATGACTGGCTTTGATCGATAAATGCTCC 1449 Query 62204 CCTGTCTGCAGCCATTTTTATGATCGTCTTTTGTGCAATTTCCCAAATAGTTTTATAAAC 62263 || || ||||||||| || | | || || |||||||||| |||||| |||| Sbjct 1450 TCTATCAGCAGCCATTAAAATTGTTGATTTAACTGATATTTCCCAAACAGTTTTGTAAAG 1509 Query 62264 -TCGCTTAATATCTTCTGGAAGGTTTG---TATTCTGAATGGATCCACCATCTACC-ATA 62318 || | || | | || ||| | || |||| |||||||| |||| ||| || Sbjct 1510 ATCCCGTA-TGTTTTGTGGTATACTTTCGATATTTTGAATGGAACCACGG-CTAGATATT 1567 Query 62319 ATCCTATTCTTGATCTCATCATTCCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGC 62378 || || || || | |||| ||| || | | ||||||| | |||| || | || Sbjct 1568 ATTTCGTTTTTCATTTGTTCATCCCACAAATCTAGTTCGGTTAGATCTCTTAGTAAGTGA 1627 Query 62379 GGGTTAACTACTTGGAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATAC 62438 ||||||| ||||| ||||| || |||||||||| ||| ||||||||||| |||||| Sbjct 1628 TGGTTAACCACTTGAAATTCGCCCGACAATACTCGCCGCGTGTAAATATTTGACGTATAC 1687 Query 62439 GGTTCCACCGACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCC 62498 ||||| | || || |||||||||||||| || || || ||||| || ||||| |||||| Sbjct 1688 GGTTCAAAAGATTCGTTATTTCCCAAAATCTGCGCGGTGGATGCTGTTGGCATTGGTGCC 1747 Query 62499 ACCAATAAACTATTTCTAAGACCGTATGTTCTGATTTTATCTTTTAGATGTTCCCAATTC 62558 || | || | || || | ||| ||| | | ||||||| ||||| || ||||| | Sbjct 1748 ACAAGTAGAGAGTTCCTTATACCATATTTCTTTATTTTATTTTTTAAATCAATCCAATCC 1807 Query 62559 CAAAGATCCGACGGTACAACANNNNNNNNNNNATATTGTAGAATACCGTTACTGGCGTAC 62618 || | || | || || ||| || || || || || ||| || Sbjct 1808 CACAAATTTGTAGGAGTTACTCCCCACATATCATACTGCAGTATTCCCTTGCTGACGGGA 1867 Query 62619 GATCCTACATATGTATCATATGGTCCTTCCTTCTCAGCTAGTTTACAACTCGCCTCTAAT 62678 ||| ||||||| ||||||||||| || || || || | |||||| ||||| ||| Sbjct 1868 CTTCCGTCATATGTTTCATATGGTCCAAATTTTTCTGCCAGCTCACAACTTGCCTCCAAT 1927 Query 62679 GCACCGTAATAAATGGTTTCAAAGATCTTCTTATTTAGATCTTGTGCTTCCGGGCTATCA 62738 || || ||||||| ||||||||||| | |||||| | | || | | || ||| Sbjct 1928 GCGCCAAAATAAATTGTTTCAAAGATTTGCTTATTCAAAAGAAACGCGTTCTCACTTTCA 1987 Query 62739 AATGGATAATTTAAGAGAATAAACGCGTCCGCTAATCCTTGAACACCAATACCGATAGGT 62798 | || || | | | |||||| ||||| || | ||||||||||||||||| |||||| Sbjct 1988 TAAGGGTATCTCATTAAAATAAAAGCGTCGGCCAGCCCTTGAACACCAATACCAATAGGT 2047 Query 62799 CTATGTCTCTTATTAGAGATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATT 62858 ||||||| | ||| || ||| ||||| || | ||||||||||| | ||| || ||| Sbjct 2048 CTATGTCGCAAATTCGATTTTTTTGCTTCGGGTAATGGATAATAATTTACATCAATTATT 2107 Query 62859 TTATTGAGATTTCTG---ACAATTACTTTGACCACATCCTTCAGTTTGAGAAAATCAAAT 62915 ||||| | ||| || || ||| | ||||| || || | ||| ||| ||||| Sbjct 2108 TTATTTAAATTCTTGGTGACTATTTTTGTGACC---TCTTTTAATTTTTTAAAGTCAAAG 2164 Query 62916 CGCCCATC---TATTACAAACATGTTCAATGCAACAGATGCCAGATTACACACGGCTACC 62972 ||| | | |||||||| || || |||| || || || || || ||||||| | Sbjct 2165 ACTTTATCCGCTGTCACAAACATATTTAAAGCAATCGAAGCGAGGTTGCAAACGGCTATC 2224 Query 62973 TCATTAGCATCCGCATATTGTATTATCTCAGTGCAAAGATTACTACACTTGATAGTTCCT 63032 |||| | ||| ||||| | || ||||| || |||||||| || || ||||| || Sbjct 2225 TCATCTGGTGCCGAATATTCAACAATTTCAGTACATAGATTACTGCATTTTATAGTACCG 2284 Query 63033 AAATTTTGTTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAATGAATGGAGTACCA 63092 | |||||||| || || ||| | || || | ||| || || || || |||| ||||| Sbjct 2285 AGGTTTTGTTGGTTGCTTTTTCTATTGCATGAATCTTTGTATAGCATATATGGGGTACCT 2344 Query 63093 GTTTCAATCTGAGATTCTATAATCGCTTTCCAGA-CGACTCGAGCCTTTA-TTATAGATT 63150 ||||| | || | ||||||||||| ||| | |||| | || |||| || | ||| Sbjct 2345 GTTTCCACTTGTGCCTCTATAATCGCAAACCAAAGGGACT-GGGCTTTTACTTTTCTATT 2403 Query 63151 TGTATCTCCTTTCTCTTTCGTATAGAGT--ATACAATCGTTCGAACTCGTCTCCCCAAAC 63208 | | | | ||||||| ||| | |||||| || || || |||||||| Sbjct 2404 CG---CGCGTCCCTCTTTCTCATATTTTTCATACAAGGTCTCAAATTCCGAACCCCAAAC 2460 Query 63209 ATTGTCCAATCTAGGACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCAC 63268 | | ||| | |||||| | | || ||||| | ||||| ||| ||| | | | || Sbjct 2461 TTCATGCAAGCCAGGACACTTGTGAGGGCACATAAGGGACCAATCTTCGTTAGCTTCAAC 2520 Query 63269 TCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTTGTTCTATGTTC 63328 |||||||||||| | ||| |||||||| | ||| ||||| ||| | | ||||||||| Sbjct 2521 TCGTTTCATAAACAAATCGGGAATCCACAAAGCATAAAATAAATCACGAGCTCTATGTTC 2580 Query 63329 CTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTC 63388 || || || || || || || | ||| | ||| | | ||||||||| ||||| || || Sbjct 2581 TTCCTTGCCCGTGTTTTTCTTTAAATCCAAAAACTCAAAAATATCAGAGTGCCAAGGCTC 2640 Query 63389 CAAGTATATGGCCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGT 63448 ||||| || || | | ||||||||| ||| ||||| || || | ||| | || Sbjct 2641 TAAGTAGATTGCAAAAGCTCCAGGCCTTTTTCCGCCTCCTTGGTCAACGTAGCGGGCCAC 2700 Query 63449 GTTATTATAAACTCTCAACATTGGAATAATACCGTTTGATATACCATTGGTACCGGAGAT 63508 || || ||||||| | |||||| | | ||||| || | ||||| || || || || Sbjct 2701 ATTGTTGAAAACTCTTAGCATTGGCACCAGGCCGTTAGAAGTTCCATTAGTTCCTGATAT 2760 Query 63509 ATAGCCTCCACTGGCACGAATATTACTAATTGATAGACCTATTCCCCCTGCCATTTTAGA 63568 | | || | || || || | || || || || || || || |||||| Sbjct 2761 AGATGTGCCTTTAGCTCGTATGCAATGAACATTTATTCCAATACCTCCAGCTGATTTAGA 2820 Query 63569 GATTAATGCGCATCGTTTTAACGTGTCATAGATGCCTTCTATGCTATCATCGATCATGTT 63628 || | |||||| ||| | | | | | || ||||| || ||| | | ||| | Sbjct 2821 TATCATAGCGCATTGTTCAACTGATTTAAAAATACCTTCAATTGAATCTGCAACCATTGT 2880 Query 63629 AAGTAGAAAACAGCTAGACATTTGGTGACGAGTAGTTCCCGCATTAAATAAGGTAGGAGA 63688 |||||| || || || | ||| | ||| | ||| | ||| ||| | || || || Sbjct 2881 AAGTAGGAAGCAAGATGAAAGTTGCGGTCGAATTGTTGCAGCAGCAAAAAGTGTCGGTGA 2940 Query 63689 AGCGTGCGTAAACCATTTTTCAGAAAG-TAGATTGTACGTCTCAATAGCTGAGTCTATAT 63747 || |||||||| || |||| || || ||| ||||| || ||||| || || ||||||| Sbjct 2941 TGCATGCGTAAAAAATCTTTCCGACAGATAG-TTGTAGGTTTCAATTGCGGAATCTATAT 2999 Query 63748 CCCATTGATGAATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACAATTT 63807 | |||||| |||| | || | ||| ||||||||||||||||||||| | |||| Sbjct 3000 CATCACCATGAATACCTATAGACACCCTCATCAACATGTGCTGAGGTCTTTCAGCGATTT 3059 Query 63808 TGTTGTTTATTTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATG 63867 || ||| |||||||| || || || ||| | |||||||| |||||||| ||||| Sbjct 3060 TGCCGTTGATTTTCAATAAATAAGACCGTTCAAGTGTTTTAAATCCAAAATAATTGTAGC 3119 Query 63868 AAAAGTCTCGTTCGTAAATAATAACCGAATTGAG 63901 ||| || || || || || ||| | || || || Sbjct 3120 CAAAATCACGATCATATATGATAGCTGAGTTCAG 3153 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 629556493368480