Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Themira_20minor_20[genbank_20GCA_5F001014575.1_202015-05-28] 33,166 sequences; 99,885,510 total letters Query= NC_003313.1 Length=33106 Score E Sequences producing significant alignments: (Bits) Value seq13268 80.6 6e-11 >seq13268 Length=3871 Score = 80.6 bits (88), Expect = 6e-11 Identities = 98/134 (73%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 796 AAATGCGCATAAGCCATCGTTTGTTCAATCTTCTGATGGCCGAGTATTCGTTGCAAAATC 855 || || ||||||||||| || |||| ||| || || || | |||| |||||| | Sbjct 3100 AAGTGAGCATAAGCCATTGTCTGTTGAATATTGGCGTGACCTAATATTTGTTGCAGAGCA 3159 Query 856 AGGATGTCGCCACGGTTCATCATAAAGTGAGTGGCAAAGGTATGCCGTAAAACGTGGGTG 915 | || | ||||| |||||||| |||||| | || || ||||||| | |||||| || Sbjct 3160 ACAATATTGCCACCATTCATCATGAAGTGACTTGCGAAAGTATGCCTAAGAACGTGCGTA 3219 Query 916 GCTTGACCTTCCGG 929 |||||||| || || Sbjct 3220 GCTTGACCGTCTGG 3233 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 105775924135056