Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Themira_20minor_20[genbank_20GCA_5F001014575.1_202015-05-28] 33,166 sequences; 99,885,510 total letters Query= NC_003356.1 Length=42575 Score E Sequences producing significant alignments: (Bits) Value seq23044 208 2e-49 seq26734 102 2e-17 seq12086 84.2 6e-12 >seq23044 Length=7840 Score = 208 bits (230), Expect = 2e-49 Identities = 220/290 (76%), Gaps = 0/290 (0%) Strand=Plus/Plus Query 23698 CCTATAGATCCCCACGGAGCCACAAACCTTTCTCACCACCTTGCTGATGAAAACTTAAAC 23757 || || || || ||||| || |||||| | |||||||| || |||||||| |||||| Sbjct 2442 CCGATTGACCCTCACGGCGCAACAAACTTATCTCACCAACTGGCTGATGAGGGATTAAAC 2501 Query 23758 CCTATTACCATCATTCAGAACTACACCAATATGTCGGATCCCATGAAGGAACTTGAGGCG 23817 ||||| ||||| |||| |||||||| |||||||| || || ||||| || ||||| ||| Sbjct 2502 CCTATCACCATTGTTCAAAACTACACGAATATGTCTGACCCGATGAAAGAGCTTGAAGCG 2561 Query 23818 GCTATTGAGGCCGGGCGTTTTCATCATGATGGTAATCCTGTGATGACATGGTGTATCAGC 23877 || |||| | ||||| |||||||||||||| || || | |||||||||||||| | Sbjct 2562 GCGATTGCTTCAGGGCGCTTTCATCATGATGGCAACCCAATCATGACATGGTGTATGGGG 2621 Query 23878 AACGTGATTGGAAAGCACATTCCCGGCGACGATGATGTTGTTCGTCCGATCAAACAAGGC 23937 || ||| | || || | | || || |||||||||| ||| | || || ||| | Sbjct 2622 AATGTGGTGGGTAAATATTTACCGGGTAACGATGATGTCGTTAGGCCTATAAAAGAGCAA 2681 Query 23938 AACGAAAACAAAATCGATGGTGCTGTGGCGCTGATTATGGCGATTGGTCG 23987 |||||||| ||||| || |||||||| ||| | |||||||| || || || Sbjct 2682 AACGAAAATAAAATTGACGGTGCTGTCGCGTTAATTATGGCTATCGGACG 2731 Score = 165 bits (182), Expect = 2e-36 Identities = 184/243 (76%), Gaps = 2/243 (1%) Strand=Plus/Plus Query 22996 ACGATGCAAACTGGGATGGGGGCACGTCGTCAGCCGCTGATTTTTGGTATCACCACTGCG 23055 || ||| ||| |||||||||||| | || |||||| |||| | | ||| ||||| || Sbjct 1637 ACCATGTTAACGGGGATGGGGGCAAGACGGCAGCCGTTGATGTGGGCTATTACCACAGCA 1696 Query 23056 GGCTATAACATTGAAGGACCATGCTACGACAAACGTCGTGAAGTGATCGAAATGCTTGAA 23115 || |||||||| ||||| || |||||||| || ||||| |||||||| || ||| ||||| Sbjct 1697 GGTTATAACATCGAAGGGCCTTGCTACGATAAGCGTCGCGAAGTGATTGAGATG-TTGAA 1755 Query 23116 -GGGATTGTGCCCAATGATGAACTGTTCGGGATTATTTATACCATTGACGACGGGGATGA 23174 || | || |||||||| ||| | ||||| |||| |||||| | || || || || || Sbjct 1756 TGGTACGGTTCCCAATGAGGAATTATTCGGTGTTATCTATACCGTGGATGAGGGCGACGA 1815 Query 23175 CTGGACAGATCCGGCGGTATTGCGTAAAGCGAACCCCAATATGGGGATTTCTGTCTACAG 23234 |||||||||||| || ||||| ||||| || |||||| |||| |||||||| Sbjct 1816 CTGGACAGATCCTAACACGCTGAAGAAAGCTAACCCGAACATGGGGGTTTCAGTCTACAG 1875 Query 23235 CGA 23237 || Sbjct 1876 TGA 1878 Score = 107 bits (118), Expect = 5e-19 Identities = 148/203 (73%), Gaps = 8/203 (4%) Strand=Plus/Plus Query 22661 ACAACGAAATACCCCGTAAAAACGGGAAATCAGCAATGTCTGCTGGCGTTGGTCTGTATA 22720 ||| ||| || ||||||||||| |||||||| || || ||||| || || | | ||| Sbjct 1292 ACACCGAGATCCCCCGTAAAAATGGGAAATCGGCTATTTCTGCGGGGGTCGCATTATATT 1351 Query 22721 TGTTTGCCTGCGATGATGAATTTGGCGCTGAAGTGTATTCCGGGGCCACAACAGAGAAAC 22780 ||| | || ||| | |||||||| |||||||| || || || || ||||| || || | Sbjct 1352 GTTTTACGTGTGATAACGAATTTGGTGCTGAAGTTTACTCGGGTGCAACAACCGAAAAGC 1411 Query 22781 AGGCGTGGGAAGTTTTTCGTCCAGCCAGACTGATGGCGCAA-CGCACGGAACCATTGC-- 22837 | ||||||||||| || | || || | | | || | |||| || || ||| || | Sbjct 1412 AAGCGTGGGAAGTGTTCAGGCCTGCAAAATTAAT-GTGCAAGCGTAC---ACCGTTACTC 1467 Query 22838 -GTGAAGCATTTGGTATTGAAGT 22859 |||||||||||||||||||| Sbjct 1468 ACAGAAGCATTTGGTATTGAAGT 1490 >seq26734 Length=1040 Score = 102 bits (112), Expect = 2e-17 Identities = 121/158 (77%), Gaps = 6/158 (4%) Strand=Plus/Plus Query 22528 TTGCCACACACCAAAGGGGAGTGGGCATTTAAACGGATGCCCATTACGCTTGAACCCTGG 22587 || || ||||| || |||||||||||||||||||| || || |||||||| ||||| ||| Sbjct 5 TTACCCCACACAAAGGGGGAGTGGGCATTTAAACGAATTCCGATTACGCTCGAACCGTGG 64 Query 22588 CAGTTGTTCTGTATTTGTGTTGTG--TTTGGGTGGGTGAGAAAAAAGAGCG-GCCTGCGT 22644 || | || | | || ||||||| ||||| |||||| ||||| | || || | Sbjct 65 CAACT-TTTTATCGTT-TGTTGTGCATTTGGCTGGGTG-CAAAAAGGTACGAAACTTAGG 121 Query 22645 CGATTTCGCGAGGCTTACAACGAAATACCCCGTAAAAA 22682 |||||||| || | ||||| ||| || ||||||||||| Sbjct 122 CGATTTCGTGAAGTTTACACCGAGATCCCCCGTAAAAA 159 >seq12086 Length=38917 Score = 84.2 bits (92), Expect = 6e-12 Identities = 73/89 (82%), Gaps = 4/89 (4%) Strand=Plus/Minus Query 8503 ATGGAGGAAGCAGAACCGCGAGGGACTCGCTGGTATCACCCGAAAATGGGGTTGTTTCAG 8562 ||| | ||||||||| ||| || ||||||||||||||||||||||||| ||||||||| Sbjct 1259 ATGAACGAAGCAGAAAAGCGCGGTGCTCGCTGGTATCACCCGAAAATGGGATTGTTTCAG 1200 Query 8563 GTTATTGGTTGGCAG---AAATAA-GAAA 8587 | ||||| ||| || |||||| |||| Sbjct 1199 GCGATTGGCTGGGAGGCTAAATAATGAAA 1171 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 136064790278604