Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Themira_20minor_20[genbank_20GCA_5F001014575.1_202015-05-28] 33,166 sequences; 99,885,510 total letters Query= NC_003389.1 Length=146454 Score E Sequences producing significant alignments: (Bits) Value seq15048 443 2e-119 >seq15048 Length=4365 Score = 443 bits (490), Expect = 2e-119 Identities = 1231/1869 (66%), Gaps = 42/1869 (2%) Strand=Plus/Plus Query 36790 TCAACTGTGAATTTTATAGGATTTGATGCCGATTTTGTTCTCATATAATACATTCCAGTT 36849 ||||| ||||||| || | ||| | ||| | ||| ||||| | ||||||||||||||| Sbjct 1286 TCAACCGTGAATTGAATGGCATTCGCTGCTGGTTTAGTTCTAAGGTAATACATTCCAGTT 1345 Query 36850 TTTAGCCCCAATCTCCATCCGTAAAAATGCATACTGGTCAGTTTTGCGTATGTAGGATTA 36909 ||||| || | |||| | | ||||| || || | || | || | || | Sbjct 1346 TTTAGACCAGCTTTCCACGCAAAGAAATGAATCGATGTTAACTTCCCATAATTTGGCTCT 1405 Query 36910 TCTATATATATTGTCATTGATTGACTTTGATCTATAAACGCACCTCTGTCGGCTGCCATT 36969 | | || || | | ||| || |||||||| ||||| || ||||| || || |||||| Sbjct 1406 CCAACATGAATATTAAATGACTGGCTTTGATCGATAAATGCTCCTCTATCAGCAGCCATT 1465 Query 36970 TCTAAAATACATTTTTGA---GATATCTCCCAAACCGTTTTATATATTTGTTTTATATTA 37026 ||||| | || | ||||| |||||||| ||||| || | | ||| || Sbjct 1466 ---AAAATTGTTGATTTAACTGATATTTCCCAAACAGTTTTGTAAAGATCCCGTATGTTT 1522 Query 37027 TCTGGTAAA---TCTAAATGTTGAATAGAACCATTATGTAACACAATTGTATTCTTTATG 37083 | ||||| | || | || |||||| |||||| | | ||| || || || Sbjct 1523 TGTGGTATACTTTCGATATTTTGAATGGAACCACGGCTAGATATTATTTCGTTTTTCATT 1582 Query 37084 TCATTATTCCACATATTTCTACTTA--TTAGTTCTCTCAATAGGTGTGGATTTACAACCT 37141 | | || ||||| || ||| || |||| ||||| | || ||| | || || || | Sbjct 1583 TGTTCATCCCACAAAT--CTAGTTCGGTTAGATCTCTTAGTAAGTGATGGTTAACCACTT 1640 Query 37142 GAAAATCTCCAGATAATACTCTTCTTGTATATATATTGCTAGTATATGGTTCAATGGACT 37201 |||| || || || ||||||| | || || ||||| ||||| ||||||| || | Sbjct 1641 GAAATTCGCCCGACAATACTCGCCGCGTGTAAATATTTGACGTATACGGTTCAAAAGATT 1700 Query 37202 CATTATTACTTAATATTTGAGATGTAGATGCAGTAGGCATTGGTGCTATTAGAAGGCTAT 37261 | ||||| | || || || | || ||||| || ||||||||||| | || || | Sbjct 1701 CGTTATTTCCCAAAATCTGCGCGGTGGATGCTGTTGGCATTGGTGCCACAAGTAGAGAGT 1760 Query 37262 TTCTCAATCCATGTGTATTAATTCTCTTTTTTAGTTCATTCCAATCCCATAAATCTGTTG 37321 | || | |||| | | || ||| | ||||||| ||| |||||||||| |||| ||| | Sbjct 1761 TCCTTATACCATATTTCTTTATTTTATTTTTTAAATCAATCCAATCCCACAAATTTGTAG 1820 Query 37322 GGTTCTTTAACCACATATCATATTGTAGAATACCTTTACTCGCTGGAGAATCGTTATATG 37381 | | | |||||||||||| || || || || || || | ||| ||| ||||| Sbjct 1821 GAGTTACTCCCCACATATCATACTGCAGTATTCCCTTGCTGACGGGACTTCCGTCATATG 1880 Query 37382 TCTCATAAGGTCCGTAAATTTT--AGCTAGTTCGCAACTAGATTCTAGTGCGGCATAATA 37439 | ||||| ||||| ||||||| || || || ||||| | || | |||| || |||| Sbjct 1881 TTTCATATGGTCC--AAATTTTTCTGCCAGCTCACAACTTGCCTCCAATGCGCCAAAATA 1938 Query 37440 TATTGTTTCGAAAATTTGTATATTTAATATTTTTGCTTCTTCGCTATCGAATGCATAGCC 37499 |||||||| || ||||| |||| || | || | || || || | | || | Sbjct 1939 AATTGTTTCAAAGATTTGCTTATTCAAAAGAAACGCGTTCTCACTTTCATAAGGGTATCT 1998 Query 37500 CAATAATATAAACACATCAGCCAAACCCTGAACACCGATACCTATGGGTCTATGTTTCTT 37559 || ||| ||||| | || |||| || |||||||| ||||| || ||||||||| | Sbjct 1999 CATTAAAATAAAAGCGTCGGCCAGCCCTTGAACACCAATACCAATAGGTCTATGTCGCAA 2058 Query 37560 ATTAGATCTAGACGATTCTATCACTGGATAATAATTGATATCTATTATTTTATTTAGATT 37619 ||| ||| | | ||| | |||||||||||| | ||| ||||||||||||| ||| Sbjct 2059 ATTCGATTTTTTTGCTTCGGGTAATGGATAATAATTTACATCAATTATTTTATTTAAATT 2118 Query 37620 TTTAACTAGTATTTTCGTAATTATTCTCAACTTGTCGAACATAAATACGTTAT---TATT 37676 || | |||||| || | | | || || | || ||| || |||| | Sbjct 2119 CTTGGTGACTATTTTTGTGACCTCTTTTAATTTTTTAAAGTCAAAGACTTTATCCGCTGT 2178 Query 37677 AACAAATTTACTCAACGAAATAGATCCTAGATTACATACAGCAACTTCATCTTCGTTACT 37736 ||||| || | || | ||| || | || || || || || | ||||| | || | Sbjct 2179 CACAAACATATTTAAAGCAATCGAAGCGAGGTTGCAAACGGCTATCTCATC-TGGTGCCG 2237 Query 37737 AA-ATTGTATAATCTCTGTACAGAGATTACTCGATCTAATTGTTCCCAAATTGCTTTGAT 37795 || ||| | ||| || ||||| |||||||| || | || || || | || ||| | Sbjct 2238 AATATTCAACAATTTCAGTACATAGATTACTGCATTTTATAGTACCGAGGTTTTGTTGGT 2297 Query 37796 TGGATTTTTTATTACAAGAATCTTTATATAGTATATACGGCGTTCCTTGTTCTATTTGAG 37855 || |||| |||| || |||||||| ||||| ||||| || || ||| ||| | ||| | Sbjct 2298 TGCTTTTTCTATTGCATGAATCTTTGTATAGCATATATGGGGTACCTGTTTCCACTTGTG 2357 Query 37856 CCTCGATAATAGATTTCCATAAACTTCT-TGCTTTAACGATCGCTTTAAtttttttCTTT 37914 |||| ||||| | ||| || || ||||| || | || | || | Sbjct 2358 CCTCTATAATCGCAAACCA-AAGGGACTGGGCTTTTACTTTTCTATTCGCGCGTCCCTCT 2416 Query 37915 GTTTCGTATTCTATATATAATTTGTTAAAATCATTCCCCCATACATCGCATAATCCTGGA 37974 | || |||| | ||| || | | ||| || ||||| || || || || ||| Sbjct 2417 TTCTCATATTTTTCATACAAGGTCTCAAATTCCGAACCCCAAACTTCATGCAAGCCAGGA 2476 Query 37975 CATTCGCATGGACACATTAGAGACCATTCTTCATCTTTTTCTACGCGTTCCATAAATAAA 38034 || | | || ||||| || ||||| ||||| | ||| || |||| |||||| ||| Sbjct 2477 CACTTGTGAGGGCACATAAGGGACCAATCTTCGTTAGCTTCAACTCGTTTCATAAACAAA 2536 Query 38035 TCAGGTACCCATAATGCAGTAAATAAATCTTTGGTTCTATATTCTTCGTTCCCTACATTC 38094 || || | ||| || ||| ||||||||| | ||||| |||||| || || || Sbjct 2537 TCGGGAATCCACAAAGCATAAAATAAATCACGAGCTCTATGTTCTTCCTTGCCCGTGTTT 2596 Query 38095 TTTCTTAAGCTTAGAAAATCGAATATATCAGCGTGCCATGGTTCTATATAAATCGACATT 38154 || |||| | ||| || || ||||||| |||||| || |||| || || | | Sbjct 2597 TTCTTTAAATCCAAAAACTCAAAAATATCAGAGTGCCAAGGCTCTAAGTAGATTGCAAAA 2656 Query 38155 GCTCCTGGTCTTTTATCACCTCCCTGATTAATATATCTAACTGTGTTATTATATATTCTT 38214 ||||| || ||||| | ||||| || | || || | | || || | | |||| Sbjct 2657 GCTCCAGGCCTTTTTCCGCCTCCTTGGTCAACGTAGCGGGCCACATTGTTGAAAACTCTT 2716 Query 38215 AACATAGGTACTATACCATTAGATTTGCCGTTTATACCGGATATATAAGTACCCTTAGCT 38274 | ||| || || | || ||||| | || || | || |||||| | || || |||||| Sbjct 2717 AGCATTGGCACCAGGCCGTTAGAAGTTCCATTAGTTCCTGATATAGATGTGCCTTTAGCT 2776 Query 38275 CGTAT---AT-TACTTATCGACAATCCTATTCCACCTGCATGTTTTGATATTAAAGCGCA 38330 ||||| || || | | | ||| || || || || ||| ||||| | |||||| Sbjct 2777 CGTATGCAATGAACATTT----ATTCCAATACCTCCAGCTGATTTAGATATCATAGCGCA 2832 Query 38331 TTGTTTTAACGTATCAAATATACCTTCTAT--ACTGT-CATCCTTTATTGGTAGTATAAA 38387 ||||| | | | ||| |||||||| || | | | || || |||| |||| || Sbjct 2833 TTGTTCAACTGATTTAAAAATACCTTCAATTGAATCTGCAACC---ATTGTAAGTAGGAA 2889 Query 38388 ACAACTAGACATTTGAGG--CAATGGAGTTCCGGCGTTAAATAATGTAGGAGATGCATGT 38445 ||| || | ||| || ||| ||| | || ||| | ||| || |||||||| Sbjct 2890 GCAAGATGAAAGTTGCGGTCGAAT--TGTTGCAGCAGCAAAAAGTGTCGGTGATGCATGC 2947 Query 38446 ATGAACCATTTTTCCGACAAATAATTATATGTTTCTATTACATCATCTATATCACCGCCG 38505 | || || ||||||||| ||| || || ||||| ||| | |||||||||| | || Sbjct 2948 GTAAAAAATCTTTCCGACAGATAGTTGTAGGTTTCAATTGCGGAATCTATATCATCACCA 3007 Query 38506 TGAATACCTAGAGATACCCTCATTAGCATATGTTGTGGTCTTTCTATTATTTTATTATTC 38565 |||||||||| ||| |||||||| | ||| || || |||||||| ||||| || Sbjct 3008 TGAATACCTATAGACACCCTCATCAACATGTGCTGAGGTCTTTCAGCGATTTTGCCGTTG 3067 Query 38566 TGTTTAAGTAGATACGATTTTTCTAATGTTTTTATTCCAAAATAACTATATGAATAATCT 38625 ||| | || ||| || ||| | |||||| | |||||||||| | || | |||| Sbjct 3068 ATTTTCAATAAATAAGACCGTTCAAGTGTTTTAAATCCAAAATAATTGTAGCCAAAATCA 3127 Query 38626 CTATCGTAT 38634 | ||| ||| Sbjct 3128 CGATCATAT 3136 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 468330561331040