Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Themira_20minor_20[genbank_20GCA_5F001014575.1_202015-05-28] 33,166 sequences; 99,885,510 total letters Query= NC_003391.1 Length=205719 Score E Sequences producing significant alignments: (Bits) Value seq15048 628 3e-175 >seq15048 Length=4365 Score = 628 bits (696), Expect = 3e-175 Identities = 1281/1893 (68%), Gaps = 25/1893 (1%) Strand=Plus/Plus Query 64818 TTTATT-TTATCCTTGTCCAATGTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAG 64876 |||||| ||| ||||| | ||||||||||||| | | ||| ||||| || | || Sbjct 1270 TTTATTGTTACTTTTGTCAACCGTGAATTGAATGGCATTCGCTGCTGGTTTAGTTCTAAG 1329 Query 64877 ATAGTACATTCCCGTTTTTAGACCGAGACTCCATCCGTAAAAATGCATACTCGTTAGTTT 64936 || |||||||| ||||||||||| |||| | | ||||| || |||| || Sbjct 1330 GTAATACATTCCAGTTTTTAGACCAGCTTTCCACGCAAAGAAATGAATCGATGTTAACTT 1389 Query 64937 GGAATAACTCGGATCTGCTATATGGATATTCATAGATTGACTTTGATCGATGAAGGCTCC 64996 |||| | || ||| | | ||| ||||| | || || ||||||||||| || ||||| Sbjct 1390 CCCATAATTTGGCTCTCCAACATGAATATTAAATGACTGGCTTTGATCGATAAATGCTCC 1449 Query 64997 CCTGTCTGCAGCCATTTTTATGATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATAAAC 65056 || || ||||||||| || | | || || |||||||||| |||||| |||| Sbjct 1450 TCTATCAGCAGCCATTAAAATTGTTGATTTAACTGATATTTCCCAAACAGTTTTGTAAAG 1509 Query 65057 -TCGCTTAATATCTTCTGGAAGGTTTG---TATTCTGAATGGATCCACCATCTGCCATAA 65112 || | || | | || ||| | || |||| |||||||| |||| | || | Sbjct 1510 ATCCCGTA-TGTTTTGTGGTATACTTTCGATATTTTGAATGGAACCACGGCTAGATATTA 1568 Query 65113 TCCTATTCTTGATCTCATCATTCCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCG 65172 | || || || | |||| ||| || | | ||||||| | |||| || | || Sbjct 1569 TTTCGTTTTTCATTTGTTCATCCCACAAATCTAGTTCGGTTAGATCTCTTAGTAAGTGAT 1628 Query 65173 GATTAACTACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACG 65232 | ||||| ||||||||||| || |||||||||| ||| ||||||||||| ||||||| Sbjct 1629 GGTTAACCACTTGAAATTCGCCCGACAATACTCGCCGCGTGTAAATATTTGACGTATACG 1688 Query 65233 GTTCCACAGACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCA 65292 |||| | ||| || |||||||||||||| || || || ||||| || ||||| ||||||| Sbjct 1689 GTTCAAAAGATTCGTTATTTCCCAAAATCTGCGCGGTGGATGCTGTTGGCATTGGTGCCA 1748 Query 65293 CCAATAAACTATTTCTAAGACCGTATGTTCTGATTTTATCTTTTAGAGGTTCCCAATTCC 65352 | | || | || || | ||| ||| | | ||||||| ||||| | ||||| || Sbjct 1749 CAAGTAGAGAGTTCCTTATACCATATTTCTTTATTTTATTTTTTAAATCAATCCAATCCC 1808 Query 65353 AAAGATCCGACGGTACAACNNNNNNNNNNNNNNNTTGTAGAATACCGTTACTGGCGTACG 65412 | | || | || || || || || || || ||| || Sbjct 1809 ACAAATTTGTAGGAGTTACTCCCCACATATCATACTGCAGTATTCCCTTGCTGACGGGAC 1868 Query 65413 ATCCTACATATGTATCGTATGGTCCTTCCTTCTCAGCTAGTTCACAACTCGCCTCTAATG 65472 ||| ||||||| || |||||||| || || || || |||||||| ||||| |||| Sbjct 1869 TTCCGTCATATGTTTCATATGGTCCAAATTTTTCTGCCAGCTCACAACTTGCCTCCAATG 1928 Query 65473 CACCGTAATAAATGGTTTCGAAGATCTTCTTATTTAGATCTTGTGCTTCCAGGCTATCAA 65532 | || ||||||| ||||| ||||| | |||||| | | || | | || ||| Sbjct 1929 CGCCAAAATAAATTGTTTCAAAGATTTGCTTATTCAAAAGAAACGCGTTCTCACTTTCAT 1988 Query 65533 ATGGATAATTTAAGAGAATAAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGTC 65592 | || || | | | |||||| ||||| || | ||||||||||||||||| ||||||| Sbjct 1989 AAGGGTATCTCATTAAAATAAAAGCGTCGGCCAGCCCTTGAACACCAATACCAATAGGTC 2048 Query 65593 TATGTCTCTTATTAGAGATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTT 65652 |||||| | ||| || ||| ||||| || | ||||||||||| | ||| || |||| Sbjct 2049 TATGTCGCAAATTCGATTTTTTTGCTTCGGGTAATGGATAATAATTTACATCAATTATTT 2108 Query 65653 TATTGAGATTTCTG---ACAATTACTTTGACCACATCCTTCAGTTTGAGAAAATCAAATC 65709 |||| | ||| || || ||| | ||||| || || | ||| ||| ||||| Sbjct 2109 TATTTAAATTCTTGGTGACTATTTTTGTGACC---TCTTTTAATTTTTTAAAGTCAAAGA 2165 Query 65710 GCTCATC---TATTACAAACATGTTCAATGCAACAGATGCCAGATTACAAACGGCTACCT 65766 | ||| | | |||||||| || || |||| || || || || |||||||||| || Sbjct 2166 CTTTATCCGCTGTCACAAACATATTTAAAGCAATCGAAGCGAGGTTGCAAACGGCTATCT 2225 Query 65767 CATTAGCATCCGCATATTGTATTATCTCAGTGCAAAGATTACTACACTTGATGGTTCCTA 65826 ||| | ||| ||||| | || ||||| || |||||||| || || || || || | Sbjct 2226 CATCTGGTGCCGAATATTCAACAATTTCAGTACATAGATTACTGCATTTTATAGTACCGA 2285 Query 65827 AATTTTGTTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAATGAATGGAGTACCAG 65886 |||||||| || || ||| | || || | ||| || || || || |||| ||||| | Sbjct 2286 GGTTTTGTTGGTTGCTTTTTCTATTGCATGAATCTTTGTATAGCATATATGGGGTACCTG 2345 Query 65887 TTTCAATCTGAGATTCTATAATCGCTTTCCAGACG-ACTCGAGCCTTTA-TTATAGATTT 65944 |||| | || | ||||||||||| ||| | | ||| | || |||| || | ||| Sbjct 2346 TTTCCACTTGTGCCTCTATAATCGCAAACCAAAGGGACTGG-GCTTTTACTTTTCTATTC 2404 Query 65945 GTATCTCTTTTCTCTTTCGTATAGTGT--ATACAATCGTTCGAACTCGTCTCCCCAAACA 66002 | | | | ||||||| ||| | | |||||| || || || |||||||| Sbjct 2405 G---CGCGTCCCTCTTTCTCATATTTTTCATACAAGGTCTCAAATTCCGAACCCCAAACT 2461 Query 66003 TTGTCCAATCCAGGACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACT 66062 | | ||| |||||||| | | || ||||| | ||||| ||| ||| | | | ||| Sbjct 2462 TCATGCAAGCCAGGACACTTGTGAGGGCACATAAGGGACCAATCTTCGTTAGCTTCAACT 2521 Query 66063 CGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAAATCTCTGGTTCTATGTTCC 66122 ||||||||||| | ||| |||||||| | ||| ||||||||| | | ||||||||| Sbjct 2522 CGTTTCATAAACAAATCGGGAATCCACAAAGCATAAAATAAATCACGAGCTCTATGTTCT 2581 Query 66123 TCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCATAATGCCACGGTTCC 66182 || || || || || || || | ||| | ||| | | ||||||| | ||||| || || Sbjct 2582 TCCTTGCCCGTGTTTTTCTTTAAATCCAAAAACTCAAAAATATCAGAGTGCCAAGGCTCT 2641 Query 66183 AAGTATATGGCCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTG 66242 ||||| || || | | ||||||||| ||| ||||| || || | ||| | || Sbjct 2642 AAGTAGATTGCAAAAGCTCCAGGCCTTTTTCCGCCTCCTTGGTCAACGTAGCGGGCCACA 2701 Query 66243 TTATTATAAACTCTCAACATTGGAATAATACCATTGGATGTACCATTGGTCCCGGAGATA 66302 || || ||||||| | |||||| | | || || || || ||||| || || || ||| Sbjct 2702 TTGTTGAAAACTCTTAGCATTGGCACCAGGCCGTTAGAAGTTCCATTAGTTCCTGATATA 2761 Query 66303 TAGCTTCCACTTGCACGAATATTACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAG 66362 | | || | || || || | || || || || || || || |||||| Sbjct 2762 GATGTGCCTTTAGCTCGTATGCAATGAACATTTATTCCAATACCTCCAGCTGATTTAGAT 2821 Query 66363 ATTAATGCGCATCGTTTTAACGTATCATAGATGCCCTCTATACTATCATCCATCATGTTA 66422 || | |||||| ||| | | | | | || || || || ||| | | ||| || Sbjct 2822 ATCATAGCGCATTGTTCAACTGATTTAAAAATACCTTCAATTGAATCTGCAACCATTGTA 2881 Query 66423 AGTAGAAAACAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAA 66482 ||||| || || || | ||| | ||| | ||| | ||| ||| | || || || Sbjct 2882 AGTAGGAAGCAAGATGAAAGTTGCGGTCGAATTGTTGCAGCAGCAAAAAGTGTCGGTGAT 2941 Query 66483 GCGTGCGTAAACCATTTTTCAGAAAG-TAGATTGTACGTCTCAATAGCTGAGTCTATATC 66541 || |||||||| || |||| || || ||| ||||| || ||||| || || |||||||| Sbjct 2942 GCATGCGTAAAAAATCTTTCCGACAGATAG-TTGTAGGTTTCAATTGCGGAATCTATATC 3000 Query 66542 CCATTGATGAATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTT 66601 |||||| |||| | || | ||| ||||||||||||||||||||| |||| || Sbjct 3001 ATCACCATGAATACCTATAGACACCCTCATCAACATGTGCTGAGGTCTTTCAGCGATTTT 3060 Query 66602 GTTGTTTATTTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGA 66661 | ||| |||||||| || || || ||| | |||||||| |||||||| ||||| Sbjct 3061 GCCGTTGATTTTCAATAAATAAGACCGTTCAAGTGTTTTAAATCCAAAATAATTGTAGCC 3120 Query 66662 AAAGTCTCGTTCGTAAATAATAACCGAGTTGAG 66694 ||| || || || || || ||| | ||||| || Sbjct 3121 AAAATCACGATCATATATGATAGCTGAGTTCAG 3153 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 657899938011440