Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Themira_20minor_20[genbank_20GCA_5F001014575.1_202015-05-28] 33,166 sequences; 99,885,510 total letters Query= NC_003444.1 Length=37074 Score E Sequences producing significant alignments: (Bits) Value seq23044 242 9e-60 seq26734 109 1e-19 seq13007 107 5e-19 seq15918 93.3 1e-14 >seq23044 Length=7840 Score = 242 bits (268), Expect = 9e-60 Identities = 362/511 (71%), Gaps = 6/511 (1%) Strand=Plus/Plus Query 170 GTTTTTACGCCCATCAAAGGTGTTGAGCCACCGGAGTGGTTCGCTGAAGAAGATCTCCCT 229 || |||||||| | |||||||| | |||||| || |||||| |||| | || | Sbjct 513 GTATTTACGCCGCTAAAAGGTGTGGCGCCACCTGATTGGTTCACTGAGAACGAGTTAGAG 572 Query 230 CTCGCTACGATCATGTGGCAACTGACAACTAAAGAACTCTGCGGTCAGGGCCTGCTGTGC 289 || || | |||||||| | || || | ||||||||||| || ||||| | | || Sbjct 573 CTTGCCATTGTCATGTGGGAGCTCACGATAAAAGAACTCTGTGGACAGGGTATTTTATGT 632 Query 290 GTGACTGACCTCGCGGTGCTTGAGCGGTGGTGCGTGGCCTACGAGTTCTGGCGGCGTGCC 349 | || |||||||| ||||||||||| ||||| |||||||| | | ||||| ||| Sbjct 633 ATTACCGACCTCGCTGTGCTTGAGCGCTGGTGTGTGGCCTATCATATTTGGCGTAATGCA 692 Query 350 GTGAAAAATAT--TGCCAGACAGGGCAACAC-CATCACCGGTGCAATGGGCGGTATGGTC 406 || | |||| ||| |||| | ||| | | | | ||||||| ||| || | Sbjct 693 GTCATTGATATCATGCGAGACGG---AACTCGCTTAATTGGTGCAACGGGTGGCCCAATA 749 Query 407 AAAAATCCGGAGCTGACCGCCAAAAAAGAACAGGAGTCCGAGATGAGCAGTACGGGGGCA 466 ||||| || || | || | |||||||| || || ||| ||| |||| || ||| Sbjct 750 AAAAACCCTGACTTAACGACAAAAAAAGAGCAAGAAAGCGAAATGGATCGTACTGGCGCA 809 Query 467 ATGCTCGGACTCGACCCCAGCAGCCGCCAGCGTCTGATTGGCCTGGCGGGGAAGAAGAAA 526 ||| | || | || || ||||| |||||||| | |||||| |||| ||| | |||||| Sbjct 810 ATGTTGGGTTTAGATCCGAGCAGTCGCCAGCGGTTAATTGGCATGGCAGGGCAAAAGAAA 869 Query 527 GCCACTAACCCGTTTCTGAAAATCATCGAATCATGAGCCGGAAATCTTACCCCAACGTAA 586 ||| || ||| ||| ||||| ||||||||||| ||||||||||| ||||| | Sbjct 870 CAAGATAATCCATTTATGAGGATCATTTCATCATGAGCCGTAAATCTTACCCAAACGTCA 929 Query 587 ATGCTGCCAATCAGTATGCCCGTGATGTCGTGCGCGGAAAGATTGTGGCCTGCCAGTTTG 646 ||| || ||||| ||||| |||||||| || ||||| ||| |||| || || |||| || Sbjct 930 ATGTGGCAAATCAATATGCGCGTGATGTGGTTCGCGGCAAGGTTGTAGCGTGTCAGTATG 989 Query 647 TGATTCAGGCCTGCCAGCGCCATCTTGATGA 677 | ||| | || ||||| || || ||||||| Sbjct 990 TCATTGATGCTTGCCAACGACACATTGATGA 1020 Score = 217 bits (240), Expect = 3e-52 Identities = 305/428 (71%), Gaps = 0/428 (0%) Strand=Plus/Plus Query 1804 ACAGCCGAACGCTTTCAGAAATGGGTGGAAATGGGCGTCCTGACCGTTACCGATGGTGCT 1863 || || ||||| ||| ||||||||||||| ||| ||| | || || ||||| Sbjct 2313 ACCGCAGAACGGTTTAGAAAATGGGTGGAAACAGGCCATTTGAAGCTAACTGACGGTGCC 2372 Query 1864 GAGGTGGATTATCGCTACATCCTCGAGGAGGCCAAAGCGGCGAACAAAATCAGCCCGGTC 1923 || | ||||||||| || | ||||| |||||||| | ||| | | |||| | Sbjct 2373 GAAATTGATTATCGCGTTATTTTAGAGGATGCCAAAGCAGATAACTTGAATAACCCGATT 2432 Query 1924 AGTGAGTCACCCATCGACCCCTTCGGGGCGACCGGGCTGTCACATGACCTTGCTGATGAA 1983 | ||| || || ||||| ||| || || | || || | || |||||||| Sbjct 2433 AATGAAAGCCCGATTGACCCTCACGGCGCAACAAACTTATCTCACCAACTGGCTGATGAG 2492 Query 1984 GATCTGAATCCCGTCACTATCGTCCAGAACTTCGCCAATATGTCCGATCCGATGAAAGAG 2043 | | || || |||| || || || |||| | | |||||||| || |||||||||||| Sbjct 2493 GGATTAAACCCTATCACCATTGTTCAAAACTACACGAATATGTCTGACCCGATGAAAGAG 2552 Query 2044 CTGGAAGCAGCGATTGAATCGGGACGCTTTCATCATGACGGCAATCCCATCATGACCTGG 2103 || ||||| ||||||| || || |||||||||||||| ||||| || |||||||| ||| Sbjct 2553 CTTGAAGCGGCGATTGCTTCAGGGCGCTTTCATCATGATGGCAACCCAATCATGACATGG 2612 Query 2104 TGTATCGGCAATGTGGTCGGCAAAAACATGCCAGGTAACGATGATTTAGTGAAGCCCGTC 2163 ||||| || |||||||| || ||| | | || |||||||||||| | || | ||| | Sbjct 2613 TGTATGGGGAATGTGGTGGGTAAATATTTACCGGGTAACGATGATGTCGTTAGGCCTATA 2672 Query 2164 AAGGAGCAGGCGGAAAACAAAATCGATGGTGCGGTTGCACTGATTATGACGATCGGTCGG 2223 || ||||| ||||| ||||| || ||||| || || | |||||| | ||||| ||| Sbjct 2673 AAAGAGCAAAACGAAAATAAAATTGACGGTGCTGTCGCGTTAATTATGGCTATCGGACGG 2732 Query 2224 GCAATGCT 2231 || ||||| Sbjct 2733 GCGATGCT 2740 Score = 167 bits (184), Expect = 6e-37 Identities = 181/240 (75%), Gaps = 0/240 (0%) Strand=Plus/Plus Query 1224 TACCACAATGCTTACCGGGATGGGGGCGCGACGTCAGCCACTGATGTGGGCCATCACCAC 1283 ||| || ||| | || ||||||||||| |||| ||||| |||||||||| || ||||| Sbjct 1633 TACAACCATGTTAACGGGGATGGGGGCAAGACGGCAGCCGTTGATGTGGGCTATTACCAC 1692 Query 1284 CGCCGGGTACAACATTGAGGGGCCGTGCTACGACAAGCGGCGGGAAGTCATCGAGATGCT 1343 || || || ||||| || ||||| |||||||| ||||| || ||||| || |||||| | Sbjct 1693 AGCAGGTTATAACATCGAAGGGCCTTGCTACGATAAGCGTCGCGAAGTGATTGAGATGTT 1752 Query 1344 CAACGGCTCGGTGCCTAACGATGAACTGTTCGGGATCATCTATACCGTTGATGAAGGTGA 1403 || || |||| || || || ||| | ||||| | ||||||||||| ||||| || || Sbjct 1753 GAATGGTACGGTTCCCAATGAGGAATTATTCGGTGTTATCTATACCGTGGATGAGGGCGA 1812 Query 1404 CGACTGGACCGACCCGCAGGTGCTGGAAAAAGCCAATCCAAATATTGGCGTGTCGGTTTA 1463 ||||||||| || || | |||| | ||||| || || || || || || || || || Sbjct 1813 CGACTGGACAGATCCTAACACGCTGAAGAAAGCTAACCCGAACATGGGGGTTTCAGTCTA 1872 Score = 145 bits (160), Expect = 2e-30 Identities = 158/210 (75%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 895 ACCGAAATCCCCCGTAAGAACGGCAAATCGGCAATCTCTGCCGGTGTTGCCCTGTATTGT 954 ||||| ||||||||||| || || |||||||| || ||||| || || || | |||||| Sbjct 1294 ACCGAGATCCCCCGTAAAAATGGGAAATCGGCTATTTCTGCGGGGGTCGCATTATATTGT 1353 Query 955 TTTGCCTGTGATAACGAGTTCGGCGCGGAAGTGTATTCCGGTGCCACGACAGAGAAACAG 1014 ||| | ||||||||||| || || || ||||| || || ||||| || || || || || Sbjct 1354 TTTACGTGTGATAACGAATTTGGTGCTGAAGTTTACTCGGGTGCAACAACCGAAAAGCAA 1413 Query 1015 GCGTGGGAAGTCTTTCGCCCGGCGCGACTGATGTGTAAACGCACACCCATGCTGACGGAA 1074 ||||||||||| || | || || | | ||||| || || ||||| | || || ||| Sbjct 1414 GCGTGGGAAGTGTTCAGGCCTGCAAAATTAATGTGCAAGCGTACACCGTTACTCACAGAA 1473 Query 1075 GCGTTCGGGATTGAGGTTAACGCCTCAAAC 1104 || || || ||||| || |||||| |||| Sbjct 1474 GCATTTGGTATTGAAGTGAACGCCAAAAAC 1503 >seq26734 Length=1040 Score = 109 bits (120), Expect = 1e-19 Identities = 188/268 (70%), Gaps = 4/268 (1%) Strand=Plus/Plus Query 1472 TTTTGTTAAGTCAGCAGCAGCGTGCGAAAAATAACGCCCGTCTGGCAAACGTCTTTAAAA 1531 |||| | |||||||| | || || |||| || | || || ||| | |||| |||| Sbjct 764 TTTTAATTAGTCAGCAAAATCGAGCTAAAAGCAATCCGCGCCTAACAAGCATCTTCAAAA 823 Query 1532 CAAAACACCTCAATATCTGGGTGTCGGCGCGTTCGGCGTATTTCAACCTGGTGAGCTGGC 1591 | || || | ||||||||||| || |||||||| ||||||||||| || |||| |||| Sbjct 824 CTAAGCATTTAAATATCTGGGTTTCAGCGCGTTCAGCGTATTTCAATATGTTGAGTTGGC 883 Query 1592 -AGAGCTGCGAGGATAAATCACTGACCCTTGAGCAGTTCGAGGGGCAGCCGTGCATTCTG 1650 |||| || || |||||| | ||||| || || ||| || ||||| | || ||| Sbjct 884 GAGAG-TGTGAAGATAAAACCCTGACACTAGAAATGTTTGAAGGGCAATCTTGTGTTCAA 942 Query 1651 GCCTTTGACCTGGCGCGTAAGCTGGATATGAACAGCATGGCGCGACTT-TATACCCGCGA 1709 | | ||| |||| | ||| ||||||||||| || || | || | ||| ||||| Sbjct 943 TCTCTCGACTTGGCCAGAAAGTTGGATATGAAC-TCACGGGTTAAATTGTTTACGCGCGA 1001 Query 1710 GATTGACGGTAAAACGCATTACTACAGT 1737 ||||| || | |||||| ||| || Sbjct 1002 AATTGATGGCAGGCGGCATTATTACTGT 1029 Score = 100 bits (110), Expect = 7e-17 Identities = 115/155 (74%), Gaps = 0/155 (0%) Strand=Plus/Plus Query 760 TTGCCACACACCAAGGGGGAGTGGGCATTCAAGAGGATGCCCATCACGCTGGAACCGTGG 819 || || ||||| ||||||||||||||||| || | || || || ||||| ||||||||| Sbjct 5 TTACCCCACACAAAGGGGGAGTGGGCATTTAAACGAATTCCGATTACGCTCGAACCGTGG 64 Query 820 CAGCTCTTTGTGATCTGCTGTGCGTTTGGCTGGGTCAATAAAGGCTCCCGGCTGCGCCGC 879 || || ||| | | || ||||| ||||||||||| | ||||| | || | || Sbjct 65 CAACTTTTTATCGTTTGTTGTGCATTTGGCTGGGTGCAAAAAGGTACGAAACTTAGGCGA 124 Query 880 TTCAGGGAGGTGTATACCGAAATCCCCCGTAAGAA 914 || | || || || ||||| ||||||||||| || Sbjct 125 TTTCGTGAAGTTTACACCGAGATCCCCCGTAAAAA 159 >seq13007 Length=9541 Score = 107 bits (118), Expect = 5e-19 Identities = 113/149 (76%), Gaps = 0/149 (0%) Strand=Plus/Plus Query 20733 TGCGTGTTCGGTAAGGTGATTAGGTGCAAGGTGAGCATATCGACGAACCATTTCGATAGA 20792 ||| ||||| || || ||||| || || | |||||||| | | |||||||| || || Sbjct 9392 TGCATGTTCAGTTAGATGATTCGGCGCTAAATGAGCATACCTTCTCACCATTTCTATTGA 9451 Query 20793 CTCCCAGCCTCCCATTTCCTGTAACACTGACAACGGGACTCCGGCTTGACCCAGCCAACT 20852 ||||| ||||||||||| || | | || || || ||||||| ||| | |||||||| Sbjct 9452 TTCCCATCCTCCCATTTCTTGAAGTGCAGATAATGGAACTCCGGACTGAACAAGCCAACT 9511 Query 20853 TGCCCAGGTGTGTCTCAAGTCGTGAAATC 20881 ||||| || || |||||||| ||||||| Sbjct 9512 CGCCCAAGTATGCCTCAAGTCATGAAATC 9540 >seq15918 Length=4287 Score = 93.3 bits (102), Expect = 1e-14 Identities = 87/108 (81%), Gaps = 2/108 (2%) Strand=Plus/Minus Query 27708 ATGGTGGGCTGGGCGGGGGCATCGAAAGATGCGCCGGTTTCCT-TGATCACCGGTTACGC 27766 |||||||||||| | ||||||||||||||||||||| | ||| || | |||||| |||| Sbjct 4248 ATGGTGGGCTGGACAAGGGCATCGAAAGATGCGCCGGATCCCTCTGTTTACCGGTAACGC 4189 Query 27767 CAACCCCGTTCAGTTCACCACCAGCGAAATTGCCGTTTC-CGGTGGTG 27813 ||| ||||||||||||||| |||||| ||||| ||||||| Sbjct 4188 TAACTTTGTTCAGTTCACCACCCTTGAAATTAGTGTTTCTTGGTGGTG 4141 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 118468523232912