Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Themira_20minor_20[genbank_20GCA_5F001014575.1_202015-05-28] 33,166 sequences; 99,885,510 total letters Query= NC_003529.1 Length=155060 Score E Sequences producing significant alignments: (Bits) Value seq15048 122 9e-23 seq3053 105 7e-18 seq31959 84.2 2e-11 >seq15048 Length=4365 Score = 122 bits (134), Expect = 9e-23 Identities = 482/746 (65%), Gaps = 17/746 (2%) Strand=Plus/Plus Query 153070 GGTTGACAACTTGAAATTCGCCCGACAATACACGTCTCAAAAACAAATT--ACTGTGAAA 153127 |||| || ||||||||||||||||||||||| || | | | | ||| || || | | Sbjct 1629 GGTTAACCACTTGAAATTCGCCCGACAATACTCGCCGCGTGTAAATATTTGAC-GT-ATA 1686 Query 153128 CGGTTCAAACGACTCGTTGTTATTGAGTATTTGTGCGGTCGTGGCCGTCGGCATGTACGC 153187 ||||||||| || ||||| || | || || ||||| | || || ||||| || Sbjct 1687 CGGTTCAAAAGATTCGTTATTTCCCAAAATCTGCGCGGTGGATGCTGTTGGCATTGGTGC 1746 Query 153188 CACAAGCAACGAATTACGTAATCCGTGTTTTTGTATGTTCATCTTCAATTGTGACCAGTC 153247 |||||| | || || | || || | ||| | ||| || | || || | ||| || Sbjct 1747 CACAAGTAGAGAGTTCCTTATACCATATTTCTTTATTTTATTTTTTAAATCAATCCAATC 1806 Query 153248 CCATAACGAAGTAGGTATCGCATTCCACAAATCGTATTGCAATATCCCTTGGCTAGCTTT 153307 ||| || ||||| | | ||||| ||| || |||| ||| || | ||| | Sbjct 1807 CCACAAATTTGTAGGAGTTACTCCCCACATATCATACTGCAGTATTCCCTTGCTGACGGG 1866 Query 153308 GCTACCGGCAAACGTGCTATACGGCTCACTGTCAGACGCCAGTTTCAAACTGGCATCGAG 153367 || ||| || | || ||| || || | ||||| | |||| || || | Sbjct 1867 ACTTCCGTCATATGTTTCATATGGTCCAAATTTTTCTGCCAGCTCACAACTTGCCTCCAA 1926 Query 153368 CGCGGCATGATACACAGTTTCGGAAATCTGTTTGTTCAGTAAAACGGCAGCATCGCTCAC 153427 ||| || ||| | ||||| | || || || |||| | || || || || | Sbjct 1927 TGCGCCAAAATAAATTGTTTCAAAGATTTGCTTATTCAAAAGAAACGCGTTCTCACTTTC 1986 Query 153428 GTACGG-TATGCGCAACATGACAAATGCATCGGCCAAACCTTGAATGCCAATGCCTATGG 153486 || || ||| | || | | ||| || ||||||| ||||||| ||||| || || | Sbjct 1987 ATAAGGGTAT-CTCATTAAAATAAAAGCGTCGGCCAGCCCTTGAACACCAATACCAATAG 2045 Query 153487 GACGATGGCGCATATTAGAtttttttGCAGCTTCAACAGGATAGAAATTGCGGTCGATAA 153546 | | ||| |||| ||| ||||||||||| | | ||||| |||| || || | Sbjct 2046 GTCTATGTCGCAAATTCGATTTTTTTGCTTCGGGTAATGGATAATAATTTACATCAATTA 2105 Query 153547 TTTTATTTAAACTAATCACGAC-ATGTTTC--ACCACAGAATGCAACAGTTGAAAATCAA 153603 ||||||||||| | | ||| || ||| ||| | | || || ||| |||| Sbjct 2106 TTTTATTTAAATTCTTGGTGACTATTTTTGTGACCTCT---TTTAATTTTTTAAAGTCAA 2162 Query 153604 A--CGTT--CCATTAATGATATATTTGTTGACGGCAATCGACGCCAAGTTGCAAACGGCA 153659 | | || || | | | | | | || | |||||||| || | |||||||||||| Sbjct 2163 AGACTTTATCCGCTG-TCACAAACATATTTAAAGCAATCGAAGCGAGGTTGCAAACGGCT 2221 Query 153660 GTTTCGTCGGGGGCGCAATATTGTACTATTTCCGCACACAAATTGCTGCATTTTATCAGG 153719 | || || || || |||||| || ||||| | ||| | ||| ||||||||||| Sbjct 2222 ATCTCATCTGGTGCCGAATATTCAACAATTTCAGTACATAGATTACTGCATTTTATAGTA 2281 Query 153720 CCGCAATTACTTTGATTGCTTTTGCGGTTACAAGCGTCCTTGTATAGCATGTATGGTGTG 153779 ||| || ||| |||||||| | || || | || ||||||||||| ||||| || Sbjct 2282 CCGAGGTTTTGTTGGTTGCTTTTTCTATTGCATGAATCTTTGTATAGCATATATGGGGTA 2341 Query 153780 CCGGTTTCGGCTTGAATTTCTATAAT 153805 || ||||| |||| |||||||| Sbjct 2342 CCTGTTTCCACTTGTGCCTCTATAAT 2367 >seq3053 Length=25279 Score = 105 bits (116), Expect = 7e-18 Identities = 146/199 (73%), Gaps = 4/199 (2%) Strand=Plus/Minus Query 139568 GTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGC-TCGAGTCTTCGAGCTGTTTACC 139626 || ||||| |||||||||||||||||| || ||| | || | ||||| | || || || Sbjct 10159 GTTGACTCCTTTTGAATGTTATAATCGGACAATGTACGTCCA-TCTTCTAATTGCTTTCC 10101 Query 139627 AGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTTTG-TT 139685 |||| | || |||||||| ||||| ||||| || || |||||||| ||| | || | || Sbjct 10100 AGCAAAAATTAGACGTTGTTGATCTGGAGGAATTCCCTCTTTGTC-CTGAATCTTGGCTT 10042 Query 139686 TTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGTCAACG 139745 | | | || | |||||| | || || ||||| | ||| | ||||| || || | | Sbjct 10041 TCACATTCTCGATTGTGTCCGAAGGTTCGACCTCTAAGGTGATGGTCTTCCCCGTGAGGG 9982 Query 139746 TTTTTACGAATATTTGCAT 139764 ||||||| || || ||||| Sbjct 9981 TTTTTACAAAGATCTGCAT 9963 >seq31959 Length=2257 Score = 84.2 bits (92), Expect = 2e-11 Identities = 108/149 (72%), Gaps = 0/149 (0%) Strand=Plus/Plus Query 58287 GCCTCAATGTTGCCCAAATCGCCGACGTGTCGCACCGCAGCGTTAGGCGCGCCATGATTG 58346 ||||| |||||||||| ||||||| || ||| || | || | || ||||| || | Sbjct 786 GCCTCGATGTTGCCCAGGTCGCCGAGATGGCGCTCCTCGTCGGTGGGGGCGCCGTGCTCC 845 Query 58347 CTACCCGTAGGATTGAAATGTTCGCCGGCCGAAGTGCATCCGTTACTCATATCGCCAAAT 58406 | ||| || ||||| || |||||| || |||| ||||| | | ||||| || Sbjct 846 TTGCCCAGCGGGTTGAAGTGGGGGCCGGCGGAGATGCAGCCGTTGGTGTTGTCGCCGAAC 905 Query 58407 TCGTGCACGTGAAAGCCGTGCAGTCCTTT 58435 |||||||| || ||||||||||| ||||| Sbjct 906 TCGTGCACATGGAAGCCGTGCAGCCCTTT 934 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 495858344267200