Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Themira_20minor_20[genbank_20GCA_5F001014575.1_202015-05-28] 33,166 sequences; 99,885,510 total letters Query= NC_003663.2 Length=224499 Score E Sequences producing significant alignments: (Bits) Value seq15048 648 0.0 >seq15048 Length=4365 Score = 648 bits (718), Expect = 0.0 Identities = 1281/1880 (68%), Gaps = 24/1880 (1%) Strand=Plus/Plus Query 78709 TTGTCCAATGTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAGATAGTACATTCCC 78768 ||||| | ||||||||||||| | | ||| ||||| || | || || |||||||| Sbjct 1283 TTGTCAACCGTGAATTGAATGGCATTCGCTGCTGGTTTAGTTCTAAGGTAATACATTCCA 1342 Query 78769 GTTTTTAGACCGAGACTCCATCCGTAGAAATGCATACTCGTTAGTTTGGAATAACTCGGA 78828 ||||||||||| |||| | ||||||| || |||| || |||| | || Sbjct 1343 GTTTTTAGACCAGCTTTCCACGCAAAGAAATGAATCGATGTTAACTTCCCATAATTTGGC 1402 Query 78829 TCTGCTATATGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCC 78888 ||| | | ||| ||||| | || || ||||||||||| || ||||| || || |||||| Sbjct 1403 TCTCCAACATGAATATTAAATGACTGGCTTTGATCGATAAATGCTCCTCTATCAGCAGCC 1462 Query 78889 ATTTTTATGATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATAAAC-TCGCTTAATATC 78947 ||| || | | || || |||||||||| |||||| |||| || | || | | Sbjct 1463 ATTAAAATTGTTGATTTAACTGATATTTCCCAAACAGTTTTGTAAAGATCCCGTA-TGTT 1521 Query 78948 TTCTGGAAGGTTTG---TATTCTGAATGGATCCACCATCTGCCATAATCCTATTCTTGAT 79004 || ||| | || |||| |||||||| |||| | || || || || || Sbjct 1522 TTGTGGTATACTTTCGATATTTTGAATGGAACCACGGCTAGATATTATTTCGTTTTTCAT 1581 Query 79005 CTCTTCATTCCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGGATTAACTACTTG 79064 | ||||| ||| || | | ||||||| | |||| || | || | ||||| ||||| Sbjct 1582 TTGTTCATCCCACAAATCTAGTTCGGTTAGATCTCTTAGTAAGTGATGGTTAACCACTTG 1641 Query 79065 AAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATATGGTTCCACCGATTC 79124 |||||| || |||||||||| ||| ||||||||||| ||||| ||||| | ||||| Sbjct 1642 AAATTCGCCCGACAATACTCGCCGCGTGTAAATATTTGACGTATACGGTTCAAAAGATTC 1701 Query 79125 ATTATTTCCCAAAATTTGAGCAGTTGATGCCGTTGGCATAGGTGCCACCAATAAACTATT 79184 |||||||||||||| || || || ||||| |||||||| |||||||| | || | || Sbjct 1702 GTTATTTCCCAAAATCTGCGCGGTGGATGCTGTTGGCATTGGTGCCACAAGTAGAGAGTT 1761 Query 79185 TCTAAGACCGTATGATCTGATTTTATCTTTTAGAGATTCCCAATCCCAAAGATCAGACGG 79244 || | ||| ||| | ||||||| ||||| | ||||||||| | || | || Sbjct 1762 CCTTATACCATATTTCTTTATTTTATTTTTTAAATCAATCCAATCCCACAAATTTGTAGG 1821 Query 79245 GACAACATTCCAAAGATCATATTGTAGAATACCGTTACTAGCGTATGATCCTGTGTATGT 79304 || ||| | |||||| || || || || || || || ||| ||||| Sbjct 1822 AGTTACTCCCCACATATCATACTGCAGTATTCCCTTGCTGACGGGACTTCCGTCATATGT 1881 Query 79305 TTCATAAGGTCCTTCCTTTTCGGCTAATTCACAACTCGCCTCTAATGCTCCGTAATAAAT 79364 |||||| ||||| ||||| || | |||||||| ||||| ||||| || ||||||| Sbjct 1882 TTCATATGGTCCAAATTTTTCTGCCAGCTCACAACTTGCCTCCAATGCGCCAAAATAAAT 1941 Query 79365 GGTTTCGAAAATCTTCTTATTGAGATCTTGTGC-TTCTAGGCTATCAAATGGATAATTTA 79423 ||||| || || | |||||| | | || |||| || ||| | || || | | Sbjct 1942 TGTTTCAAAGATTTGCTTATTCAAAAGAAACGCGTTCT-CACTTTCATAAGGGTATCTCA 2000 Query 79424 AGAGAATAAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGTCTATGTCTCTTAT 79483 | |||||| ||||| || | ||||||||||||||||| ||||||||||||| | || Sbjct 2001 TTAAAATAAAAGCGTCGGCCAGCCCTTGAACACCAATACCAATAGGTCTATGTCGCAAAT 2060 Query 79484 TAGAAATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTGAGATTC- 79542 | || ||| ||||| || | ||||||||||| | ||| || |||||||| | |||| Sbjct 2061 TCGATTTTTTTGCTTCGGGTAATGGATAATAATTTACATCAATTATTTTATTTAAATTCT 2120 Query 79543 --CTGACTATTACTTTGACCACATCCTTTAGTTTGAGAAAATCAAATCGTCCAT---CTA 79597 |||||||| | ||||| || |||| ||| ||| ||||| | || || Sbjct 2121 TGGTGACTATTTTTGTGACC---TCTTTTAATTTTTTAAAGTCAAAGACTTTATCCGCTG 2177 Query 79598 TTACAAACATGTTCAACGCGACAGATGCCAGATTACAAACGGCTACCTCATTAGCATCCG 79657 | |||||||| || || || | || || || || |||||||||| ||||| | ||| Sbjct 2178 TCACAAACATATTTAAAGCAATCGAAGCGAGGTTGCAAACGGCTATCTCATCTGGTGCCG 2237 Query 79658 CATATTGTATTATTTCAGTGCAGAGGTTACTACACTTAATGGTTCCTAAATTTTGTTGAT 79717 ||||| | |||||||| || || ||||| || || || || || | |||||||| | Sbjct 2238 AATATTCAACAATTTCAGTACATAGATTACTGCATTTTATAGTACCGAGGTTTTGTTGGT 2297 Query 79718 TACTCTTTTTGTTACACGCATCCTTATAAAGAATGAACGGAGTACCAGTTTCAATCTGAG 79777 | || ||| | || || | ||| || || || || | || ||||| ||||| | || | Sbjct 2298 TGCTTTTTCTATTGCATGAATCTTTGTATAGCATATATGGGGTACCTGTTTCCACTTGTG 2357 Query 79778 ATTCTATAATCGCTTTCCAGA-CGACTCGAGCCTTTATTATAGACTTGTATCTCTTTTCT 79836 ||||||||||| ||| | |||| | || |||| | | || | | | | || Sbjct 2358 CCTCTATAATCGCAAACCAAAGGGACT-GGGCTTTTACTTT--TCTATTCGCGCGTCCCT 2414 Query 79837 CTT--TCGTATTGTGTATATAATCGTTCGAACTCGTCTCCCCAAACATCGTCTAATCCAG 79894 ||| || |||| | ||| || || || || |||||||| || | || |||| Sbjct 2415 CTTTCTCATATTTTTCATACAAGGTCTCAAATTCCGAACCCCAAACTTCATGCAAGCCAG 2474 Query 79895 GACATTCGTCAGGACACATCAACGACCACTCTCCATCATCCTTTACTCGTTTCATAAAGA 79954 |||| | || ||| ||||| | ||||| ||| | | | | | |||||||||||||| | Sbjct 2475 GACACTTGTGAGGGCACATAAGGGACCAATCTTCGTTAGCTTCAACTCGTTTCATAAACA 2534 Query 79955 GATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGCTCCTCGTTTCCTGTAT 80014 ||| |||||||| | ||| ||||| ||| | | |||||| || || || || || | Sbjct 2535 AATCGGGAATCCACAAAGCATAAAATAAATCACGAGCTCTATGTTCTTCCTTGCCCGTGT 2594 Query 80015 TCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCA 80074 | || || | ||| | ||| | | ||||||||| ||||| || || ||||| || || | Sbjct 2595 TTTTCTTTAAATCCAAAAACTCAAAAATATCAGAGTGCCAAGGCTCTAAGTAGATTGCAA 2654 Query 80075 TAACTCCCGGTCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTC 80134 | |||| || | ||| ||||| || || | ||| | || || || |||||| Sbjct 2655 AAGCTCCAGGCCTTTTTCCGCCTCCTTGGTCAACGTAGCGGGCCACATTGTTGAAAACTC 2714 Query 80135 TCAACATTGGAATAATACCATTGGATGTACCATTGGTCCCGGAGATATAGCTTCCACTGG 80194 | | |||||| | | || || || || ||||| || || || ||| | | || | | Sbjct 2715 TTAGCATTGGCACCAGGCCGTTAGAAGTTCCATTAGTTCCTGATATAGATGTGCCTTTAG 2774 Query 80195 CACGAATATTACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATC 80254 | || || | || || || || || || || |||||| || | |||||| Sbjct 2775 CTCGTATGCAATGAACATTTATTCCAATACCTCCAGCTGATTTAGATATCATAGCGCATT 2834 Query 80255 GTTTTAACGTATCATAGATGCCCTCTATGCTATCATCAATCATGTTAAGTAGAAAACAGC 80314 ||| | | | | | || || || || ||| ||| ||| ||||||| || || Sbjct 2835 GTTCAACTGATTTAAAAATACCTTCAATTGAATCTGCAACCATTGTAAGTAGGAAGCAAG 2894 Query 80315 TAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACC 80374 || | ||| | ||| | ||| | ||| ||| | || || || || |||||||| Sbjct 2895 ATGAAAGTTGCGGTCGAATTGTTGCAGCAGCAAAAAGTGTCGGTGATGCATGCGTAAAAA 2954 Query 80375 ATTTTTCAGACAG-TAGATTGTACGTCTCAATAGCTGATTCTATATCCCATTGATGAATT 80433 || |||| ||||| ||| ||||| || ||||| || || |||||||| |||||| Sbjct 2955 ATCTTTCCGACAGATAG-TTGTAGGTTTCAATTGCGGAATCTATATCATCACCATGAATA 3013 Query 80434 CCTACCGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTATTTATTTTC 80493 |||| | || | ||| ||||||||||||||||||||| |||| ||| || |||||| Sbjct 3014 CCTATAGACACCCTCATCAACATGTGCTGAGGTCTTTCAGCGATTTTGCCGTTGATTTTC 3073 Query 80494 AACAAGTAAGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCG 80553 || || ||||| ||| | |||||||| |||||||| ||||| ||| || || || Sbjct 3074 AATAAATAAGACCGTTCAAGTGTTTTAAATCCAAAATAATTGTAGCCAAAATCACGATCA 3133 Query 80554 TAAATAATAACCGAGTTGAG 80573 || || ||| | ||||| || Sbjct 3134 TATATGATAGCTGAGTTCAG 3153 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 717971023712240